11-67176568-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176568
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176568
    reference: chr 11
allele count: 2
allele frequency: 2.56811936618814e-5
allele num: 77878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*343C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.763C>T
  hgvsp: ENSP00000435543.1:p.Pro255Ser
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.957C>T
  hgvsp: ENST00000312390.5:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.957C>T
  hgvsp: ENST00000542590.1:c.957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.231C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7898G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7898G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3762C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro255Ser
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum

11-67176568-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176568
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176568
    reference: chr 11
allele count: 2
allele frequency: 2.56811936618814e-5
allele num: 77878
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.957C>G
  hgvsp: ENST00000312390.5:c.957C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.957C>G
  hgvsp: ENST00000542590.1:c.957C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7898G>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.231C>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.763C>G
  hgvsp: ENSP00000435543.1:p.Pro255Ala
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*343C>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3762C>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7898G>C
  variant of: http://identifiers.org/hgnc/9281
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro255Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

11-67176569-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176569
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176569
    reference: chr 11
allele count: 3
allele frequency: 3.820196103399974e-5
allele num: 78530
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7899G>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7899G>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*344C>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.958C>G
  hgvsp: ENSP00000443654.1:p.Pro320Ala
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.232C>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.764C>G
  hgvsp: ENSP00000435543.1:p.Pro255Arg
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.958C>G
  hgvsp: ENSP00000310193.5:p.Pro320Ala
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3763C>G
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22238
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro320Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

11-67176569-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176569
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176569
    reference: chr 11
allele count: 4
allele frequency: 5.093594804533299e-5
allele num: 78530
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.958C>T
  hgvsp: ENSP00000310193.5:p.Pro320Ser
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7899G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.764C>T
  hgvsp: ENSP00000435543.1:p.Pro255Leu
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*344C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3763C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7899G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.958C>T
  hgvsp: ENSP00000443654.1:p.Pro320Ser
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.232C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22238
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro320Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

11-67176570-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176570
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176570
    reference: chr 11
allele count: 2
allele frequency: 2.533890789306981e-5
allele num: 78930
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.233C>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.959C>G
  hgvsp: ENSP00000443654.1:p.Pro320Arg
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7900G>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7900G>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3764C>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.765C>G
  hgvsp: ENST00000526387.1:c.765C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.959C>G
  hgvsp: ENSP00000310193.5:p.Pro320Arg
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*345C>G
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22414
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18923
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro320Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/11-67176571-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176571
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176571
    reference: chr 11
allele count: 7
allele frequency: 8.831247476786435e-5
allele num: 79264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.960C>A
  hgvsp: ENST00000542590.1:c.960C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7901G>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.960C>A
  hgvsp: ENST00000312390.5:c.960C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*346C>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.766C>A
  hgvsp: ENSP00000435543.1:p.Arg256Ser
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3765C>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.234C>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7901G>T
  variant of: http://identifiers.org/hgnc/9281
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6319
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25302
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Arg256Ser
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

11-67176571-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176571
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176571
    reference: chr 11
allele count: 2
allele frequency: 2.523213564796124e-5
allele num: 79264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3765C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*346C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.960C>T
  hgvsp: ENST00000312390.5:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.234C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7901G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.766C>T
  hgvsp: ENSP00000435543.1:p.Arg256Cys
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7901G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.960C>T
  hgvsp: ENST00000542590.1:c.960C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22609
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg256Cys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

11-67176572-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176572
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176572
    reference: chr 11
allele count: 20
allele frequency: 2.506579771901241e-4
allele num: 79790
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.961G>A
  hgvsp: ENSP00000310193.5:p.Ala321Thr
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.235G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3766G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7902C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.767G>A
  hgvsp: ENSP00000435543.1:p.Arg256His
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.961G>A
  hgvsp: ENSP00000443654.1:p.Ala321Thr
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7902C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*347G>A
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6411
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22946
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Ala321Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP

11-67176573-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176573
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176573
    reference: chr 11
allele count: 1
allele frequency: 1.244771957777335e-5
allele num: 80336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.962C>T
  hgvsp: ENSP00000443654.1:p.Ala321Val
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3767C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.236C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.768C>T
  hgvsp: ENST00000526387.1:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.962C>T
  hgvsp: ENSP00000310193.5:p.Ala321Val
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7903G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7903G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*348C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala321Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

11-67176574-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176574
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176574
    reference: chr 11
allele count: 1
allele frequency: 1.242112585084712e-5
allele num: 80508
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3768G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.237G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.963G>A
  hgvsp: ENST00000312390.5:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7904C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.769G>A
  hgvsp: ENSP00000435543.1:p.Ala257Thr
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*349G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7904C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.963G>A
  hgvsp: ENST00000542590.1:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala257Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff

11-67176584-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176584
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176584
    reference: chr 11
allele count: 56
allele frequency: 6.830767729501598e-4
allele num: 81982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7914C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.779G>A
  hgvsp: ENSP00000435543.1:p.Gly260Glu
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.973G>A
  hgvsp: ENSP00000443654.1:p.Glu325Lys
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.247G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3778G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7914C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.973G>A
  hgvsp: ENSP00000310193.5:p.Glu325Lys
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*359G>A
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 17543
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 22947
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21232
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu325Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

11-67176589-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176589
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176589
    reference: chr 11
allele count: 1
allele frequency: 1.226632648054561e-5
allele num: 81524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7919C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3783G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7919C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.978G>A
  hgvsp: ENST00000542590.1:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.978G>A
  hgvsp: ENST00000312390.5:c.978G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.784G>A
  hgvsp: ENSP00000435543.1:p.Gly262Ser
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.252G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*364G>A
  variant of: http://identifiers.org/hgnc/24702
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21412
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2047
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2302
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly262Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

11-67176608-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176608
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176608
    reference: chr 11
allele count: 1
allele frequency: 1.304359168340594e-5
allele num: 76666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7938C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3798+4G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7938C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.993+4G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.799+4G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*379+4G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.993+4G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.267+4G>A
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13951
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 4.75e1
  variant carriers: 0
hgvs: c.993+4G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

11-67176611-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176611
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176611
    reference: chr 11
allele count: 1
allele frequency: 1.346221157211707e-5
allele num: 74282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.267+7A>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.799+7A>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*379+7A>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7941T>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3798+7A>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.993+7A>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.993+7A>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7941T>C
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17452
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18986
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
hgvs: c.993+7A>G
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

11-67176633-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176633
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176633
    reference: chr 11
allele count: 3
allele frequency: 4.238126183143559e-5
allele num: 70786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.267+29G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7963C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7963C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.993+29G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.993+29G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*379+29G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.799+29G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3798+29G>A
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19728
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5171
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28981
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5333
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5960
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

11-67176639-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176639
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176639
    reference: chr 11
allele count: 1
allele frequency: 1.475230873631723e-5
allele num: 67786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.799+35C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7969G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.993+35C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.993+35C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3798+35C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7969G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*379+35C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.267+35C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6064
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5575
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

11-67176640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176640
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176640
    reference: chr 11
allele count: 4
allele frequency: 6.050887967809276e-5
allele num: 66106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7970G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.993+36C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.267+36C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*379+36C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7970G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3798+36C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.799+36C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.993+36C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21955
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25413
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

11-67176643-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176643
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176643
    reference: chr 11
allele count: 1
allele frequency: 1.548706829797119e-5
allele num: 64570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7973A>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*379+39T>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3798+39T>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.993+39T>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.267+39T>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.993+39T>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7973A>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.799+39T>G
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3684
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6537
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-67176650-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176650
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176650
    reference: chr 11
allele count: 24
allele frequency: 4.07705636530425e-4
allele num: 58866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.267+46C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.799+46C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*379+46C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7980G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3798+46C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7980G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.993+46C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.993+46C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6106
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23940
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19270
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4161
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20952
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6473
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5456
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-67176651-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176651
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176651
    reference: chr 11
allele count: 1
allele frequency: 1.742706772158517e-5
allele num: 57382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3798+47G>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.799+47G>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7981C>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.993+47G>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.267+47G>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7981C>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*379+47G>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.993+47G>C
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5447
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7357
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

11-67176653-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176653
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176653
    reference: chr 11
allele count: 2
allele frequency: 3.513826908886468e-5
allele num: 56918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-7983C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.267+49G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.799+49G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-7983C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.993+49G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.993+49G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3798+49G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*379+49G>A
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24806
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8239
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18660
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6681
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6573
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3613
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

11-67176830-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176830
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176830
    reference: chr 11
allele count: 1
allele frequency: 9.223390518354546e-5
allele num: 10842
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3799-48G>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8160C>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8160C>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*380-48G>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.994-48G>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.268-48G>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.994-48G>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.800-48G>C
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16870
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9894
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6854
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

11-67176849-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176849
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176849
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 11244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3799-29G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8179C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*380-29G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.800-29G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.994-29G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.268-29G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.994-29G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8179C>T
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16385
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4829
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

11-67176850-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176850
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176850
    reference: chr 11
allele count: 1
allele frequency: 8.877840909090909e-5
allele num: 11264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.994-28C>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.800-28C>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8180G>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.268-28C>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*380-28C>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8180G>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.994-28C>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3799-28C>G
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4553
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2270
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

11-67176898-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176898
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176898
    reference: chr 11
allele count: 1710
allele frequency: 1.255875440658049e-1
allele num: 13616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8228T>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.820A>G
  hgvsp: ENSP00000435543.1:p.Arg274Gly
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1014A>G
  hgvsp: ENST00000312390.5:c.1014A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3819A>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1014A>G
  hgvsp: ENST00000542590.1:c.1014A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*400A>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8228T>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.288A>G
  variant of: http://identifiers.org/hgnc/24702
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 2.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 20902
  bin: 2.5e0
  variant carriers: 957
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 7.5e0
  variant carriers: 840
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 2.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 3.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 1.75e1
  variant carriers: 267
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 9.75e1
  variant carriers: 1171
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 6.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.75e1
  variant carriers: 140
hgvs: p.Arg274Gly
num of homozygotes: 331
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

11-67176903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176903
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176903
    reference: chr 11
allele count: 1
allele frequency: 7.4827895839569e-5
allele num: 13364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*405G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1019G>A
  hgvsp: ENSP00000310193.5:p.Arg340Gln
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.825G>A
  hgvsp: ENST00000526387.1:c.825G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8233C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3824G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.293G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1019G>A
  hgvsp: ENSP00000443654.1:p.Arg340Gln
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8233C>T
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg340Gln
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

11-67176915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176915
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176915
    reference: chr 11
allele count: 3
allele frequency: 2.262443438914027e-4
allele num: 13260
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1031G>A
  hgvsp: ENSP00000310193.5:p.Arg344Gln
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.305G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*417G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3836G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1031G>A
  hgvsp: ENSP00000443654.1:p.Arg344Gln
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8245C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.837G>A
  hgvsp: ENST00000526387.1:c.837G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8245C>T
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24032
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg344Gln
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-67176924-AGGCCCAGCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176924
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176915
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 13196
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsp: ENSP00000310193.5:p.Ala351_Leu353del
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsp: ENSP00000443654.1:p.Ala351_Leu353del
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.857_865delGCCCAGCTG
  hgvsp: ENSP00000435543.1:p.Gly286_Ala288del
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  variant of: http://identifiers.org/hgnc/24702
canonical: false
consequence: splice donor
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24125
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.75e1
  variant carriers: 1
hgvs: n.315+10_315+18delGCCCAGCTG
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: AGGCCCAGCT
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

11-67176926-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176926
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176926
    reference: chr 11
allele count: 2
allele frequency: 1.561767921286897e-4
allele num: 12806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+1G>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1042G>T
  hgvsp: ENSP00000443654.1:p.Ala348Ser
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1042G>T
  hgvsp: ENSP00000310193.5:p.Ala348Ser
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8256C>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3847G>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8256C>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*428G>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.848G>T
  hgvsp: ENSP00000435543.1:p.Gly283Val
  variant of: http://identifiers.org/hgnc/24702
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4768
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3540
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
hgvs: n.315+1G>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

11-67176944-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176944
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176944
    reference: chr 11
allele count: 1
allele frequency: 8.045052292839903e-5
allele num: 12430
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1060C>G
  hgvsp: ENSP00000310193.5:p.Pro354Ala
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8274G>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3865C>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1060C>G
  hgvsp: ENSP00000443654.1:p.Pro354Ala
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8274G>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.866C>G
  hgvsp: ENSP00000435543.1:p.Ala289Gly
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+19C>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*446C>G
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro354Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

11-67176946-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176946
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176946
    reference: chr 11
allele count: 1
allele frequency: 8.087997411840829e-5
allele num: 12364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.868C>T
  hgvsp: ENSP00000435543.1:p.Arg290Ter
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1062C>T
  hgvsp: ENST00000312390.5:c.1062C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8276G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3867C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1062C>T
  hgvsp: ENST00000542590.1:c.1062C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*448C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8276G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+21C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21741
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg290Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

11-67176947-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176947
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176947
    reference: chr 11
allele count: 4
allele frequency: 3.237817710862878e-4
allele num: 12354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3868G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1063G>A
  hgvsp: ENSP00000443654.1:p.Asp355Asn
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1063G>A
  hgvsp: ENSP00000310193.5:p.Asp355Asn
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.869G>A
  hgvsp: ENSP00000435543.1:p.Arg290Gln
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8277C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8277C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+22G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*449G>A
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4767
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp355Asn
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/11-67176948-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176948
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176948
    reference: chr 11
allele count: 1
allele frequency: 8.081461128171973e-5
allele num: 12374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*450A>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1064A>C
  hgvsp: ENSP00000310193.5:p.Asp355Ala
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3869A>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+23A>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8278T>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1064A>C
  hgvsp: ENSP00000443654.1:p.Asp355Ala
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8278T>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.870A>C
  hgvsp: ENST00000526387.1:c.870A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 21809
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4758
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp355Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

11-67176952-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176952
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176952
    reference: chr 11
allele count: 1
allele frequency: 8.191349934469201e-5
allele num: 12208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8282G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8282G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+27C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3873C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.874C>T
  hgvsp: ENSP00000435543.1:p.Arg292Cys
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1068C>T
  hgvsp: ENST00000542590.1:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*454C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1068C>T
  hgvsp: ENST00000312390.5:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg292Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

11-67176953-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176953
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176953
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 12198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1069G>A
  hgvsp: ENSP00000443654.1:p.Ala357Thr
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+28G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1069G>A
  hgvsp: ENSP00000310193.5:p.Ala357Thr
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.875G>A
  hgvsp: ENSP00000435543.1:p.Arg292His
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*455G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3874G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8283C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8283C>T
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3189
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala357Thr
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

11-67176955-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176955
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176955
    reference: chr 11
allele count: 1
allele frequency: 8.231807704972011e-5
allele num: 12148
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1071G>A
  hgvsp: ENST00000312390.5:c.1071G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8285C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1071G>A
  hgvsp: ENST00000542590.1:c.1071G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8285C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.877G>A
  hgvsp: ENSP00000435543.1:p.Ala293Thr
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*457G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3876G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+30G>A
  variant of: http://identifiers.org/hgnc/24702
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21335
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18292
  bin: 7.5e0
  variant carriers: 1
hgvs: p.Ala293Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

11-67176957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176957
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176957
    reference: chr 11
allele count: 6
allele frequency: 5.00417014178482e-4
allele num: 11990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8287G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1073C>T
  hgvsp: ENSP00000443654.1:p.Pro358Leu
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.879C>T
  hgvsp: ENST00000526387.1:c.879C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+32C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3878C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*459C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8287G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1073C>T
  hgvsp: ENSP00000310193.5:p.Pro358Leu
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20901
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4703
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro358Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-67176961-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176961
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176961
    reference: chr 11
allele count: 1
allele frequency: 8.320852055250458e-5
allele num: 12018
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.883A>C
  hgvsp: ENSP00000435543.1:p.Thr295Pro
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1077A>C
  hgvsp: ENST00000312390.5:c.1077A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1077A>C
  hgvsp: ENST00000542590.1:c.1077A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8291T>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8291T>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*463A>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+36A>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3882A>C
  variant of: http://identifiers.org/hgnc/24702
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16707
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr295Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

11-67176966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176966
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176966
    reference: chr 11
allele count: 1
allele frequency: 8.329168748958855e-5
allele num: 12006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+41C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3887C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1082C>T
  hgvsp: ENSP00000310193.5:p.Pro361Leu
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8296G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*468C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1082C>T
  hgvsp: ENSP00000443654.1:p.Pro361Leu
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8296G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.888C>T
  hgvsp: ENST00000526387.1:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17867
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro361Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

11-67176971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176971
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176971
    reference: chr 11
allele count: 1
allele frequency: 8.3236224404861e-5
allele num: 12014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8301G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3892C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*473C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.893C>T
  hgvsp: ENSP00000435543.1:p.Pro298Leu
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1087C>T
  hgvsp: ENSP00000310193.5:p.Arg363Trp
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+46C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8301G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1087C>T
  hgvsp: ENSP00000443654.1:p.Arg363Trp
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21501
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3267
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg363Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

11-67176972-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176972
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176972
    reference: chr 11
allele count: 124
allele frequency: 1.031442355681251e-2
allele num: 12022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8302C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*474G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1088G>A
  hgvsp: ENSP00000310193.5:p.Arg363Gln
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3893G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1088G>A
  hgvsp: ENSP00000443654.1:p.Arg363Gln
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.894G>A
  hgvsp: ENST00000526387.1:c.894G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+47G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8302C>T
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 7.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21661
  bin: 2.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4723
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Arg363Gln
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

11-67176988-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176988
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176988
    reference: chr 11
allele count: 1
allele frequency: 8.254911672445105e-5
allele num: 12114
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1104C>T
  hgvsp: ENST00000312390.5:c.1104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*490C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.910C>T
  hgvsp: ENSP00000435543.1:p.Arg304Cys
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8318G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1104C>T
  hgvsp: ENST00000542590.1:c.1104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3909C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8318G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+63C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22783
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg304Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

11-67176991-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67176991
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67176991
    reference: chr 11
allele count: 1
allele frequency: 8.233163181294254e-5
allele num: 12146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*493C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8321G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1107C>T
  hgvsp: ENST00000542590.1:c.1107C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.913C>T
  hgvsp: ENSP00000435543.1:p.Arg305Trp
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3912C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8321G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1107C>T
  hgvsp: ENST00000312390.5:c.1107C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+66C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20419
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg305Trp
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

11-67177024-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177024
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177024
    reference: chr 11
allele count: 1
allele frequency: 7.712478790683326e-5
allele num: 12966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3945G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1140G>A
  hgvsp: ENST00000312390.5:c.1140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*526G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8354C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1140G>A
  hgvsp: ENST00000542590.1:c.1140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8354C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*13G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+99G>A
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu380Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

11-67177054-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177054
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177054
    reference: chr 11
allele count: 1
allele frequency: 7.23589001447178e-5
allele num: 13820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*556G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*43G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+129G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3975G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1170G>A
  hgvsp: ENST00000542590.1:c.1170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1170G>A
  hgvsp: ENST00000312390.5:c.1170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8384C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8384C>T
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32743
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu390Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

11-67177061-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177061
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177061
    reference: chr 11
allele count: 2
allele frequency: 1.42186833499218e-4
allele num: 14066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8391G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3982C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*563C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*50C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1177C>T
  hgvsp: ENSP00000310193.5:p.Arg393Trp
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1177C>T
  hgvsp: ENSP00000443654.1:p.Arg393Trp
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8391G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+136C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36026
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6477
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33503
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg393Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD

11-67177065-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177065
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177065
    reference: chr 11
allele count: 1
allele frequency: 7.027406886858749e-5
allele num: 14230
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1181T>C
  hgvsp: ENSP00000310193.5:p.Ile394Thr
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8395A>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+140T>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1181T>C
  hgvsp: ENSP00000443654.1:p.Ile394Thr
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*54T>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*567T>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8395A>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3986T>C
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35834
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5586
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7965
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile394Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

11-67177066-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177066
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177066
    reference: chr 11
allele count: 1
allele frequency: 7.019514249613927e-5
allele num: 14246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*55T>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8396A>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1182T>C
  hgvsp: ENST00000542590.1:c.1182T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*568T>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8396A>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1182T>C
  hgvsp: ENST00000312390.5:c.1182T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.3987T>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+141T>C
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33702
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8284
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile394Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

11-67177079-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177079
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177079
    reference: chr 11
allele count: 1
allele frequency: 6.531678641410843e-5
allele num: 15310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8409G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1195C>T
  hgvsp: ENSP00000310193.5:p.Pro399Ser
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1195C>T
  hgvsp: ENSP00000443654.1:p.Pro399Ser
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8409G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*581C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*68C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4000C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+154C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17048
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro399Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

11-67177080-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177080
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177080
    reference: chr 11
allele count: 2
allele frequency: 1.295169019557052e-4
allele num: 15442
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8410G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1196C>T
  hgvsp: ENSP00000443654.1:p.Pro399Leu
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*582C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+155C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*69C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8410G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1196C>T
  hgvsp: ENSP00000310193.5:p.Pro399Leu
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4001C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17987
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro399Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

11-67177081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177081
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177081
    reference: chr 11
allele count: 2
allele frequency: 1.271294177472667e-4
allele num: 15732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*583G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4002G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1197G>A
  hgvsp: ENST00000312390.5:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*70G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8411C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1197G>A
  hgvsp: ENST00000542590.1:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8411C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+156G>A
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19451
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29432
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17471
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Pro399Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

11-67177084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177084
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177084
    reference: chr 11
allele count: 1
allele frequency: 6.102770657878677e-5
allele num: 16386
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1200G>A
  hgvsp: ENST00000312390.5:c.1200G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8414C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*73G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+159G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4005G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1200G>A
  hgvsp: ENST00000542590.1:c.1200G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*586G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8414C>T
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27486
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21594
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5716
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu400Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

11-67177087-GCCCAGACCACCGCGGCGGAAAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177087
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177065
    reference: chr 11
allele count: 2
allele frequency: 1.172058134083451e-4
allele num: 17064
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsp: ENSP00000443654.1:p.Pro405AlafsTer9
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsp: ENSP00000310193.5:p.Pro405AlafsTer9
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5750
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21600
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24390
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro405AlafsTer9
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: GCCCAGACCACCGCGGCGGAAAC
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

11-67177092-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177092
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177092
    reference: chr 11
allele count: 21
allele frequency: 1.105495893872394e-3
allele num: 18996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8422C>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8422C>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4013G>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*81G>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1208G>T
  hgvsp: ENSP00000443654.1:p.Arg403Ile
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1208G>T
  hgvsp: ENSP00000310193.5:p.Arg403Ile
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*594G>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+167G>T
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20669
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28164
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19918
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg403Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

11-67177094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177094
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177094
    reference: chr 11
allele count: 2
allele frequency: 1.011736139214893e-4
allele num: 19768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8424G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1210C>T
  hgvsp: ENSP00000443654.1:p.Pro404Ser
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*596C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+169C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1210C>T
  hgvsp: ENSP00000310193.5:p.Pro404Ser
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*83C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4015C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8424G>A
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro404Ser
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

11-67177097-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177097
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177097
    reference: chr 11
allele count: 1
allele frequency: 4.708541293907147e-5
allele num: 21238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*86C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1213C>T
  hgvsp: ENSP00000310193.5:p.Pro405Ser
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+172C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8427G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1213C>T
  hgvsp: ENSP00000443654.1:p.Pro405Ser
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4018C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8427G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*599C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16765
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6379
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro405Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/11-67177098-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177098
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177098
    reference: chr 11
allele count: 1
allele frequency: 4.561211457763182e-5
allele num: 21924
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1214C>A
  hgvsp: ENSP00000310193.5:p.Pro405Gln
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8428G>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*87C>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1214C>A
  hgvsp: ENSP00000443654.1:p.Pro405Gln
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4019C>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*600C>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8428G>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+173C>A
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15727
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30470
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15288
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro405Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

11-67177098-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177098
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177098
    reference: chr 11
allele count: 4
allele frequency: 1.824484583105273e-4
allele num: 21924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*87C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8428G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8428G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*600C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1214C>T
  hgvsp: ENSP00000443654.1:p.Pro405Leu
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4019C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1214C>T
  hgvsp: ENSP00000310193.5:p.Pro405Leu
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+173C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15727
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30470
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro405Leu
num of homozygotes: 1
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-67177100-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177100
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177100
    reference: chr 11
allele count: 34
allele frequency: 1.440555885094483e-3
allele num: 23602
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1216C>T
  hgvsp: ENSP00000310193.5:p.Arg406Trp
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+175C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8430G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8430G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4021C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*89C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1216C>T
  hgvsp: ENSP00000443654.1:p.Arg406Trp
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*602C>T
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13968
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32998
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6914
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13580
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg406Trp
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

11-67177101-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177101
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177101
    reference: chr 11
allele count: 5
allele frequency: 1.99092139842319e-4
allele num: 25114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1217G>C
  hgvsp: ENSP00000443654.1:p.Arg406Pro
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8431C>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+176G>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1217G>C
  hgvsp: ENSP00000310193.5:p.Arg406Pro
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*90G>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*603G>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8431C>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4022G>C
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6080
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12800
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33573
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12480
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32297
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg406Pro
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

11-67177103-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177103
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177103
    reference: chr 11
allele count: 1
allele frequency: 3.652567755131858e-5
allele num: 27378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1219C>T
  hgvsp: ENSP00000443654.1:p.Arg407Trp
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1219C>T
  hgvsp: ENSP00000310193.5:p.Arg407Trp
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*605C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4024C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+178C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*92C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8433G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8433G>A
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33894
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg407Trp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

11-67177104-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177104
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177104
    reference: chr 11
allele count: 1
allele frequency: 3.373136342170951e-5
allele num: 29646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1220G>A
  hgvsp: ENSP00000443654.1:p.Arg407Gln
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+179G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*93G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4025G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*606G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8434C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1220G>A
  hgvsp: ENSP00000310193.5:p.Arg407Gln
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8434C>T
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33840
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10015
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg407Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

11-67177118-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177118
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177118
    reference: chr 11
allele count: 3
allele frequency: 5.711457183109317e-5
allele num: 52526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+193C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*620C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1234C>T
  hgvsp: ENSP00000310193.5:p.Arg412Cys
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8448G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1234C>T
  hgvsp: ENSP00000443654.1:p.Arg412Cys
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*107C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4039C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8448G>A
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28089
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5093
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27901
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg412Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

11-67177119-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177119
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177119
    reference: chr 11
allele count: 2
allele frequency: 3.684326873480215e-5
allele num: 54284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8449C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4040G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*108G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1235G>A
  hgvsp: ENSP00000310193.5:p.Arg412His
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+194G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*621G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1235G>A
  hgvsp: ENSP00000443654.1:p.Arg412His
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8449C>T
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27425
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4956
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg412His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

11-67177120-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177120
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177120
    reference: chr 11
allele count: 13
allele frequency: 2.307910808123846e-4
allele num: 56328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1236C>T
  hgvsp: ENST00000542590.1:c.1236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+195C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1236C>T
  hgvsp: ENST00000312390.5:c.1236C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4041C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8450G>A
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*109C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*622C>T
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8450G>A
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26470
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19417
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4786
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg412Arg
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

11-67177122-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177122
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177122
    reference: chr 11
allele count: 3
allele frequency: 5.001333688983729e-5
allele num: 59984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*624G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8452C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1238G>A
  hgvsp: ENSP00000443654.1:p.Gly413Asp
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4043G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1238G>A
  hgvsp: ENSP00000310193.5:p.Gly413Asp
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8452C>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+197G>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*111G>A
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 24882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20713
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21559
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4533
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly413Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

11-67177131-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177131
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177131
    reference: chr 11
allele count: 2
allele frequency: 2.834226114559419e-5
allele num: 70566
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1247T>A
  hgvsp: ENSP00000310193.5:p.Phe416Tyr
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*120T>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+206T>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8461A>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*633T>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4052T>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1247T>A
  hgvsp: ENSP00000443654.1:p.Phe416Tyr
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8461A>T
  variant of: http://identifiers.org/hgnc/9281
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3799
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe416Tyr
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

11-67177131-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177131
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177131
    reference: chr 11
allele count: 4
allele frequency: 5.668452229118839e-5
allele num: 70566
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*633T>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1247T>G
  hgvsp: ENSP00000443654.1:p.Phe416Cys
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1247T>G
  hgvsp: ENSP00000310193.5:p.Phe416Cys
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*120T>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8461A>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8461A>C
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4052T>G
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.315+206T>G
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3799
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe416Cys
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/11-67177142-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177142
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177142
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 77792
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.316-201C>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4063C>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1258C>A
  hgvsp: ENSP00000310193.5:p.Leu420Met
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*131C>A
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8472G>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1258C>A
  hgvsp: ENSP00000443654.1:p.Leu420Met
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8472G>T
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*644C>A
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16516
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu420Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

11-67177143-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177143
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177143
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 78802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*132T>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*645T>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1259T>C
  hgvsp: ENSP00000443654.1:p.Leu420Pro
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8473A>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8473A>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4064T>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.316-200T>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1259T>C
  hgvsp: ENSP00000310193.5:p.Leu420Pro
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu420Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

11-67177147-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 67177147
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 67177147
    reference: chr 11
allele count: 1
allele frequency: 1.230799527372981e-5
allele num: 81248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435829
  ensembl transcript: ENST00000529635
  gene symbol: TBC1D10C
  hgvsc: ENST00000529635.1:c.*649T>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000526474
  gene symbol: TBC1D10C
  hgvsc: ENST00000526474.1:n.4068T>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000443654
  ensembl transcript: ENST00000542590
  gene symbol: TBC1D10C
  hgvsc: ENST00000542590.1:c.1263T>C
  hgvsp: ENST00000542590.1:c.1263T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000439568
  ensembl transcript: ENST00000546202
  gene symbol: PPP1CA
  hgvsc: ENST00000546202.1:c.311-8477A>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172531
  ensembl protein: ENSP00000438409
  ensembl transcript: ENST00000542876
  gene symbol: PPP1CA
  hgvsc: ENST00000542876.1:c.347-8477A>G
  variant of: http://identifiers.org/hgnc/9281
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000310193
  ensembl transcript: ENST00000312390
  gene symbol: TBC1D10C
  hgvsc: ENST00000312390.5:c.1263T>C
  hgvsp: ENST00000312390.5:c.1263T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175463
  ensembl transcript: ENST00000524662
  gene symbol: TBC1D10C
  hgvsc: ENST00000524662.1:n.316-196T>C
  variant of: http://identifiers.org/hgnc/24702
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175463
  ensembl protein: ENSP00000435543
  ensembl transcript: ENST00000526387
  gene symbol: TBC1D10C
  hgvsc: ENST00000526387.1:c.*136T>C
  variant of: http://identifiers.org/hgnc/24702
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6058
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr421Thr
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 1561
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21365
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24110
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 2
allele frequency: 3.386386725364037e-4
allele num: 5906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43316
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.044472e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-1

QD
type: SiteQuality
SIO_000300: 1.006e1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.448e0

GenotypeQuality
all individuals: 1455
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 443
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24110
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2916
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.308615753993905e-5
allele num: 43316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.448e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

DP
type: SiteQuality
SIO_000300: 1.044472e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

QD
type: SiteQuality
SIO_000300: 1.006e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-1

GenotypeQuality
all individuals: 1895
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21211
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6166
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.67897918065816e-4
allele num: 5956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2958
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.303780964797914e-4
allele num: 7670
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

QD
type: SiteQuality
SIO_000300: 1.267e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

DP
type: SiteQuality
SIO_000300: 1.05081e6

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

GenotypeQuality
all individuals: 823
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21211
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 338
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.71591672263264e-4
allele num: 5956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6166
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

QD
type: SiteQuality
SIO_000300: 1.267e1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

FS
type: SiteQuality
SIO_000300: 7.85e0

DP
type: SiteQuality
SIO_000300: 1.05081e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

GenotypeQuality
all individuals: 1512
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25379
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1871
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 166
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 295
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 5.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.327787021630616e-4
allele num: 6010
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

QD
type: SiteQuality
SIO_000300: 1.11e1

DP
type: SiteQuality
SIO_000300: 1.052462e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.227e0

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

FS
type: SiteQuality
SIO_000300: 2.601e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

GenotypeQuality
all individuals: 367
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1871
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3000
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.824702476680605e-4
allele num: 6218
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.529395778603134e-5
allele num: 44156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.286008230452675e-4
allele num: 7776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.623e1

MQRankSum
type: SiteQuality
SIO_000300: 4.81e-1

DP
type: SiteQuality
SIO_000300: 1.055779e6

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

GenotypeQuality
all individuals: 1454
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 325
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20844
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25302
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.286008230452675e-4
allele num: 7776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44156
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 1.055779e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
SIO_000300: 1.623e1

FS
type: SiteQuality
SIO_000300: 5.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1464
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 476
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20643
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 435
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 7.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3038
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.818737270875764e-4
allele num: 7856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.250427581240436e-5
allele num: 44436
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 2.086677367576244e-3
allele num: 6230
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.851851851851852e-3
allele num: 540
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.731301939058172e-4
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.22e-1

QD
type: SiteQuality
SIO_000300: 1.225e1

MQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

FS
type: SiteQuality
SIO_000300: 5.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 1.061376e6

GenotypeQuality
all individuals: 149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.232740912744485e-5
allele num: 44788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3070
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.570000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.15e1

DP
type: SiteQuality
SIO_000300: 1.062271e6

GenotypeQuality
all individuals: 20633
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 26055
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GenotypeQuality
all individuals: 909
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.184e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

VQSLOD
type: SiteQuality
SIO_000300: 8.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.105e0

DP
type: SiteQuality
SIO_000300: 1.06327e6

QD
type: SiteQuality
SIO_000300: 8.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1494
bin: 9.75e1
variant carriers: 53

GenotypeQuality
all individuals: 544
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 51
allele frequency: 1.111062698793081e-3
allele num: 45902
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.862630683199611e-4
allele num: 8226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.798561151079137e-3
allele num: 556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.058151e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

QD
type: SiteQuality
SIO_000300: 1.075e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

FS
type: SiteQuality
SIO_000300: 1.103e0

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.086e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 296
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.186557047273363e-5
allele num: 45734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

DP
type: SiteQuality
SIO_000300: 1.036174e6

FS
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.689e0

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

QD
type: SiteQuality
SIO_000300: 1.824e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 162
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.312566486286481e-5
allele num: 43242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

FS
type: SiteQuality
SIO_000300: 1.63e0

VQSLOD
type: SiteQuality
SIO_000300: -3.272e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 3.311e1

DP
type: SiteQuality
SIO_000300: 9.01625e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.062e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 124
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.73190162798753e-4
allele num: 5774
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.479e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.81158e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.124e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.458975634012929e-5
allele num: 40220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.033e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

QD
type: SiteQuality
SIO_000300: 1.077e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

DP
type: SiteQuality
SIO_000300: 7.78798e5

VQSLOD
type: SiteQuality
SIO_000300: 3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.58e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 69
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.584380007236264e-5
allele num: 38694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

VQSLOD
type: SiteQuality
SIO_000300: -2.026e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 4.99e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1449
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 1
allele frequency: 1.237930180737806e-4
allele num: 8078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5042
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.93566818326103e-5
allele num: 37804
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.26026e5

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -3.731e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5582
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GenotypeQuality
all individuals: 1446
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.70811894058387e-5
allele num: 36926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2714
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.002e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -1.771e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.035e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.67e-1

DP
type: SiteQuality
SIO_000300: 7.15472e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.967e0

GenotypeQuality
all individuals: 6815
bin: 7.5e0
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 21

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 57
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GenotypeQuality
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bin: 6.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 2.368265245707519e-4
allele num: 33780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2504
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 2.199661590524535e-3
allele num: 5910
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4374
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 6.234413965087282e-4
allele num: 4812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7092
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.411e1

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

DP
type: SiteQuality
SIO_000300: 6.93036e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.044325377496347e-5
allele num: 32848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4204
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.43e0

DP
type: SiteQuality
SIO_000300: 6.89767e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

FS
type: SiteQuality
SIO_000300: 2.576e0

QD
type: SiteQuality
SIO_000300: 6.22e0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.12294881214793e-5
allele num: 32664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.88002e5

FS
type: SiteQuality
SIO_000300: 1.802e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 2.74e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

GenotypeQuality
all individuals: 929
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 85
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variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.440922190201729e-3
allele num: 694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.805e1

DP
type: SiteQuality
SIO_000300: 1.47183e5

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.48e0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2259
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 95
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GenotypeQuality
all individuals: 2683
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 1.65225e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.309999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -2.135e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
all individuals: 91
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 55
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.208333333333333e-3
allele num: 192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.389e1

VQSLOD
type: SiteQuality
SIO_000300: -2.252e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.921e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.165e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e-1

DP
type: SiteQuality
SIO_000300: 1.67158e5

GenotypeQuality
all individuals: 97
bin: 7.75e1
variant carriers: 30

GenotypeQuality
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bin: 2.25e1
variant carriers: 161

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 564

GenotypeQuality
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variant carriers: 76

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 73
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variant carriers: 68

GenotypeQuality
all individuals: 71
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variant carriers: 41

GenotypeQuality
all individuals: 185
bin: 3.25e1
variant carriers: 108

European (Finnish)
type: Population
allele count: 8
allele frequency: 3.076923076923077e-1
allele num: 26
num of homozygotes: 2

Other
type: Population
allele count: 16
allele frequency: 1.111111111111111e-1
allele num: 144
num of homozygotes: 1

East Asian
type: Population
allele count: 117
allele frequency: 2.867647058823529e-1
allele num: 408
num of homozygotes: 17

Latino
type: Population
allele count: 54
allele frequency: 2.368421052631579e-1
allele num: 228
num of homozygotes: 10

African
type: Population
allele count: 694
allele frequency: 7.367303609341825e-1
allele num: 942
num of homozygotes: 261

South Asian
type: Population
allele count: 482
allele frequency: 6.377348504895475e-2
allele num: 7558
num of homozygotes: 21

European (Non-Finnish)
type: Population
allele count: 339
allele frequency: 7.865429234338747e-2
allele num: 4310
num of homozygotes: 19

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.941e-1

QD
type: SiteQuality
SIO_000300: 1.704e1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

DP
type: SiteQuality
SIO_000300: 2.52489e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.67e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 136
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 577
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.346316283435007e-4
allele num: 4262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

VQSLOD
type: SiteQuality
SIO_000300: -1.649e0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.184e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.98e-2

FS
type: SiteQuality
SIO_000300: 6.74e-1

DP
type: SiteQuality
SIO_000300: 2.23007e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

GenotypeQuality
all individuals: 22178
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 134
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GenotypeQuality
all individuals: 138
bin: 2.75e1
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GenotypeQuality
all individuals: 56
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GenotypeQuality
all individuals: 1931
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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DP
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MQ
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MQRankSum
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FS
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ClippingRankSum
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QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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Latino
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African
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European (Non-Finnish)
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Other
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QD
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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Latino
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African
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South Asian
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European (Non-Finnish)
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East Asian
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FS
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DP
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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African
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Latino
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South Asian
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DP
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ClippingRankSum
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MQRankSum
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Other
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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QD
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ReadPosRankSum
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MQ
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BaseQRankSum
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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South Asian
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQ
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FS
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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Other
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MQRankSum
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QD
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VQSLOD
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FS
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ClippingRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Other
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East Asian
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African
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Latino
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BaseQRankSum
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FS
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QD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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ReadPosRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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East Asian
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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African
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Other
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European (Finnish)
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FS
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ClippingRankSum
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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Latino
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MQ
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ClippingRankSum
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QD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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African
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MQRankSum
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BaseQRankSum
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MQ
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DP
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QD
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InbreedingCoeff
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FS
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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Other
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South Asian
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European (Finnish)
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QD
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BaseQRankSum
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MQ
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Finnish)
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African
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Latino
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East Asian
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MQRankSum
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FS
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MQ
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 123

Latino
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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East Asian
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Other
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ReadPosRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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QD
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MQRankSum
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FS
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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DP
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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ReadPosRankSum
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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South Asian
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Other
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Latino
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European (Finnish)
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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DP
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4442
num of homozygotes: 0

South Asian
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allele frequency: 1.299714062906161e-4
allele num: 7694
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.165e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.09e-2

QD
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.985e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4570
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.964636542239686e-3
allele num: 1018
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7712
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
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VQSLOD
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InbreedingCoeff
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SIO_000300: -7.74e-2

ReadPosRankSum
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SIO_000300: 7.27e-1

MQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 4.579e0

QD
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SIO_000300: 1.187e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.294330830960394e-4
allele num: 7726
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4656
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 214
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1048
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
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SIO_000300: 3.10257e5

BaseQRankSum
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MQRankSum
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SIO_000300: 5.22e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.46e-2

FS
type: SiteQuality
SIO_000300: 1.742e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.125e0

VQSLOD
type: SiteQuality
SIO_000300: 3.16e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.141327623126338e-4
allele num: 4670
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 394
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7726
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 210
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MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -1.183e0

DP
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SIO_000300: 3.12697e5

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.657e0

MQ
type: SiteQuality
SIO_000300: 5.777e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 1
allele frequency: 1.277791975466394e-4
allele num: 7826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1150
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.739e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.64095e5

QD
type: SiteQuality
SIO_000300: 3.402e1

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.21e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.826e-1

ClippingRankSum
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SIO_000300: -7.42e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 8.532423208191126e-4
allele num: 1172
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5284
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East Asian
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South Asian
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allele frequency: 1.276161306789178e-4
allele num: 7836
num of homozygotes: 0

FS
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 312
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.673769287288758e-4
allele num: 5444
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.81841e5

VQSLOD
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ReadPosRankSum
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ClippingRankSum
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QD
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: 7.2e-1

MQ
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 1244
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European (Finnish)
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Other
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East Asian
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Latino
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European (Non-Finnish)
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allele num: 5790
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South Asian
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MQRankSum
type: SiteQuality
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DP
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ClippingRankSum
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QD
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FS
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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South Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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allele frequency: 3.2605151613955e-4
allele num: 6134
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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MQRankSum
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MQ
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DP
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 935
bin: 2.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7198
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 1.401869158878505e-2
allele num: 1498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.23e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.93e-1

FS
type: SiteQuality
SIO_000300: 1.108e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

DP
type: SiteQuality
SIO_000300: 4.52365e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.635e0

MQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

QD
type: SiteQuality
SIO_000300: 2.413e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7626
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.718213058419244e-3
allele num: 1164
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.05e0

MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -2.001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.93e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

DP
type: SiteQuality
SIO_000300: 4.65177e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1720
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.213592233009709e-3
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.55e-2

DP
type: SiteQuality
SIO_000300: 4.87281e5

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 75
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.592841163310962e-4
allele num: 1788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8786
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

DP
type: SiteQuality
SIO_000300: 4.98298e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.83e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.831e1

MQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.543e0

FS
type: SiteQuality
SIO_000300: 1.582e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.36630383341221e-4
allele num: 8452
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.276348736626451e-4
allele num: 8786
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.83e-2

DP
type: SiteQuality
SIO_000300: 4.98298e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.543e0

FS
type: SiteQuality
SIO_000300: 1.582e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

QD
type: SiteQuality
SIO_000300: 2.831e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 2.08768267223382e-3
allele num: 1916
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.9296875e-3
allele num: 1024
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.991377301328362e-4
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 2.152521525215252e-3
allele num: 9756
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.493e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.07e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 5.18071e5

QD
type: SiteQuality
SIO_000300: 1.65e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2048
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European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 4.721435316336166e-4
allele num: 10590
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.84e-2

QD
type: SiteQuality
SIO_000300: 1.496e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e-1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

FS
type: SiteQuality
SIO_000300: 6.413e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2274
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 8.445945945945946e-5
allele num: 11840
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2034
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.796e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.66e-2

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 822
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African
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allele count: 1
allele frequency: 4.118616144975288e-4
allele num: 2428
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 13140
num of homozygotes: 0

East Asian
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.47e-2

ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 5.78239e5

MQRankSum
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SIO_000300: -4.21e-1

FS
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18637
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4380
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.726776949645519e-4
allele num: 11002
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.68133e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.065e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

QD
type: SiteQuality
SIO_000300: 1.019e1

FS
type: SiteQuality
SIO_000300: 1.606e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

GenotypeQuality
all individuals: 309
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.68052999631947e-5
allele num: 27170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.516356316054353e-4
allele num: 3974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4502
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 1.802e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

DP
type: SiteQuality
SIO_000300: 7.81007e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1602
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 32
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1356
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.871467286101432e-4
allele num: 5166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.258943781942078e-4
allele num: 2348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4070
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.887308922858158e-5
allele num: 11252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 3.163667041619798e-4
allele num: 28448
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 9.074e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.362e0

VQSLOD
type: SiteQuality
SIO_000300: 8.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

QD
type: SiteQuality
SIO_000300: 1.448e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.99026e5

GenotypeQuality
all individuals: 308
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 357
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GenotypeQuality
all individuals: 20
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1728
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.540650140623977e-5
allele num: 30578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4244
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.5e-3
allele num: 400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.27e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.558e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.92e-1

FS
type: SiteQuality
SIO_000300: 1.8553e1

VQSLOD
type: SiteQuality
SIO_000300: -2.817e0

DP
type: SiteQuality
SIO_000300: 8.28497e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.32e0

GenotypeQuality
all individuals: 180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
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GenotypeQuality
all individuals: 355
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variant carriers: 0

GenotypeQuality
all individuals: 425
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GenotypeQuality
all individuals: 294
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variant carriers: 0

GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 501
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GenotypeQuality
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GenotypeQuality
all individuals: 1250
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GenotypeQuality
all individuals: 789
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variant carriers: 0

GenotypeQuality
all individuals: 20668
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3192
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.633453119895459e-4
allele num: 12244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7046
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 2.96e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1

DP
type: SiteQuality
SIO_000300: 9.06818e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.132e1

GenotypeQuality
all individuals: 1250
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 444
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variant carriers: 0

GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 180
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variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.078457805338366e-4
allele num: 37090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3192
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

DP
type: SiteQuality
SIO_000300: 9.06818e5

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

QD
type: SiteQuality
SIO_000300: 1.132e1

GenotypeQuality
all individuals: 3458
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 202
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3706
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 2.17e1

DP
type: SiteQuality
SIO_000300: 9.675e5

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3430
bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 1170
bin: 5.25e1
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GenotypeQuality
all individuals: 429
bin: 7.75e1
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GenotypeQuality
all individuals: 2298
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16336
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12798
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 9.76323e5

FS
type: SiteQuality
SIO_000300: 3.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 1.209e1