15-44861708-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44861708
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44861708
    reference: chr 15
allele count: 1
allele frequency: 2.379026502355236e-5
allele num: 42034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.307-5C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6478-5C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6139-5C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+1015C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.849-5C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6478-5C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.276-1918C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14769
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2508
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
hgvs: c.6478-5C>T
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

15-44861718-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44861718
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44861718
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 37404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.276-1928C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.849-15C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6478-15C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6478-15C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+1005C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6139-15C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.307-15C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7810
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21123
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20579
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2822
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20507
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

15-44861725-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44861725
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44861725
    reference: chr 15
allele count: 3
allele frequency: 9.09090909090909e-5
allele num: 33000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+998G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6478-22G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.849-22G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.307-22G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6139-22G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6478-22G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.276-1935G>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3496
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16888
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

15-44861726-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44861726
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44861726
    reference: chr 15
allele count: 1
allele frequency: 3.184104948099089e-5
allele num: 31406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6478-23C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.849-23C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.307-23C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+997C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6139-23C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.276-1936C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6478-23C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8806
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14761
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3871
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3063
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-44861728-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44861728
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44861728
    reference: chr 15
allele count: 2
allele frequency: 6.333523339033504e-5
allele num: 31578
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+995T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6139-25T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.276-1938T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.849-25T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.307-25T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6478-25T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6478-25T>C
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19528
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23848
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15593
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24044
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3841
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8807
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

15-44861745-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44861745
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44861745
    reference: chr 15
allele count: 3
allele frequency: 1.157318108170666e-4
allele num: 25922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.276-1955A>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.849-42A>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6139-42A>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+978A>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.307-42A>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6478-42A>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6478-42A>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25832
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18724
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23836
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

15-44861749-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44861749
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44861749
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 25556
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6478-46C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.276-1959C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.849-46C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6478-46C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.307-46C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+974C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6139-46C>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 18806
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5651
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23463
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4722
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8806
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6492
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ

15-44861752-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44861752
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44861752
    reference: chr 15
allele count: 1
allele frequency: 3.90625e-5
allele num: 25600
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+971A>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.849-49A>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.307-49A>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6139-49A>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.276-1962A>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6478-49A>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6478-49A>C
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25949
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6501
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5915
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23517
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5619
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4544
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

15-44861754-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44861754
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44861754
    reference: chr 15
allele count: 2
allele frequency: 7.877737513786041e-5
allele num: 25388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.849-51G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.276-1964G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6478-51G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.307-51G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6139-51G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+969G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6478-51G>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18861
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 25911
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22791
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6505
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

15-44862673-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862673
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862673
    reference: chr 15
allele count: 3
allele frequency: 2.521050773962588e-5
allele num: 118998
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.306+50G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.848+50G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6477+50G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+50G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6138+50G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2208G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6477+50G>C
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17847
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19370
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7016
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3389
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3152
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

15-44862679-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862679
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862679
    reference: chr 15
allele count: 7
allele frequency: 5.871695074486646e-5
allele num: 119216
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6138+44T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2202T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.848+44T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6477+44T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.306+44T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+44T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6477+44T>C
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19743
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6158
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20234
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7120
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2753
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-44862686-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862686
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862686
    reference: chr 15
allele count: 1
allele frequency: 8.388980235562565e-6
allele num: 119204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.306+37G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+37G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6477+37G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2195G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.848+37G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6138+37G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6477+37G>C
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7133
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2254
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

15-44862687-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862687
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862687
    reference: chr 15
allele count: 2
allele frequency: 1.677514594376971e-5
allele num: 119224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6477+36G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6477+36G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.306+36G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.848+36G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+36G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2194G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6138+36G>C
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34846
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

15-44862689-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862689
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862689
    reference: chr 15
allele count: 19
allele frequency: 1.593371574251115e-4
allele num: 119244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.848+34G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6477+34G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6138+34G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6477+34G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+34G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.306+34G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2192G>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6378
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20478
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22811
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2763
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

15-44862690-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862690
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862689
    reference: chr 15
allele count: 1
allele frequency: 8.382510729613734e-6
allele num: 119296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.848+32delC
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.306+32delC
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6477+32delC
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2190delC
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+32delC
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6477+32delC
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6138+32delC
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36006
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: AG
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

15-44862700-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862700
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862698
    reference: chr 15
allele count: 1
allele frequency: 8.366520531441385e-6
allele num: 119524
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.306+21_306+22delCA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2179_275+2180delCA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6477+21_6477+22delCA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+21_276+22delCA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6138+21_6138+22delCA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.848+21_848+22delCA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6477+21_6477+22delCA
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23694
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: CTG
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-44862705-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862705
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862705
    reference: chr 15
allele count: 13
allele frequency: 1.086411499247869e-4
allele num: 119660
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6477+18C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.306+18C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6477+18C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+18C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.848+18C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6138+18C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2176C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23872
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21580
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

15-44862709-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862709
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862708
    reference: chr 15
allele count: 769
allele frequency: 6.42010352312573e-3
allele num: 119780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.848+13delC
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6138+13delC
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6477+13delC
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2171delC
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+13delC
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.306+13delC
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6477+13delC
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 3.75e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 21742
  bin: 2.75e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 1.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6638
  bin: 3.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 24026
  bin: 2.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 38171
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 8
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: AG
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

15-44862711-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862711
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862711
    reference: chr 15
allele count: 1
allele frequency: 8.453799983092399e-6
allele num: 118290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6477+12C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.848+12C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.306+12C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2170C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6138+12C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6477+12C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+12C>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

15-44862714-GCTA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862714
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862711
    reference: chr 15
allele count: 6
allele frequency: 5.006341365729925e-5
allele num: 119848
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.848+6_848+8delTAG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6138+6_6138+8delTAG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.306+6_306+8delTAG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.276+6_276+8delTAG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2164_275+2166delTAG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6477+6_6477+8delTAG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6477+6_6477+8delTAG
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22149
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24151
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2332
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
hgvs: c.6477+6_6477+8delTAG
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: GCTA
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD

15-44862725-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862725
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862725
    reference: chr 15
allele count: 2
allele frequency: 1.667000066680003e-5
allele num: 119976
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6475G>A
  hgvsp: ENSP00000261866.7:p.Val2159Met
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.846G>A
  hgvsp: ENSP00000453246.1:p.Val283Met
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.274G>A
  hgvsp: ENSP00000453314.1:p.Val92Met
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.304G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6136G>A
  hgvsp: ENSP00000445278.2:p.Val2046Met
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2156G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6475G>A
  hgvsp: ENSP00000396110.2:p.Val2159Met
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7447
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val2159Met
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

15-44862739-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862739
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862739
    reference: chr 15
allele count: 1
allele frequency: 8.331250520703158e-6
allele num: 120030
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6461A>G
  hgvsp: ENSP00000261866.7:p.Glu2154Gly
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.260A>G
  hgvsp: ENSP00000453314.1:p.Glu87Gly
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.290A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6122A>G
  hgvsp: ENSP00000445278.2:p.Glu2041Gly
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6461A>G
  hgvsp: ENSP00000396110.2:p.Glu2154Gly
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.832A>G
  hgvsp: ENSP00000453246.1:p.Glu278Gly
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2142A>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39797
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu2154Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

15-44862740-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862740
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862740
    reference: chr 15
allele count: 2
allele frequency: 1.666722224074136e-5
allele num: 119996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2141G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6121G>A
  hgvsp: ENSP00000445278.2:p.Glu2041Lys
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.289G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6460G>A
  hgvsp: ENSP00000396110.2:p.Glu2154Lys
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.831G>A
  hgvsp: ENSP00000453246.1:p.Glu278Lys
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.259G>A
  hgvsp: ENSP00000453314.1:p.Glu87Lys
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6460G>A
  hgvsp: ENSP00000261866.7:p.Glu2154Lys
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu2154Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/15-44862742-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862742
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862742
    reference: chr 15
allele count: 6
allele frequency: 4.999000199960008e-5
allele num: 120024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.257G>T
  hgvsp: ENSP00000453314.1:p.Ser86Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6458G>T
  hgvsp: ENSP00000261866.7:p.Ser2153Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6458G>T
  hgvsp: ENSP00000396110.2:p.Ser2153Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.287G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6119G>T
  hgvsp: ENSP00000445278.2:p.Ser2040Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.829G>T
  hgvsp: ENSP00000453246.1:p.Ser277Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2139G>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6764
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39796
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser2153Ile
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

15-44862748-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862748
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862748
    reference: chr 15
allele count: 1
allele frequency: 8.334027835652971e-6
allele num: 119990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.281C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6113C>T
  hgvsp: ENSP00000445278.2:p.Ala2038Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.823C>T
  hgvsp: ENSP00000453246.1:p.Ala275Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.251C>T
  hgvsp: ENSP00000453314.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2133C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6452C>T
  hgvsp: ENSP00000396110.2:p.Ala2151Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6452C>T
  hgvsp: ENSP00000261866.7:p.Ala2151Val
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39669
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala2151Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

15-44862748-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862748
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862748
    reference: chr 15
allele count: 1
allele frequency: 8.334027835652971e-6
allele num: 119990
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6113C>G
  hgvsp: ENSP00000445278.2:p.Ala2038Gly
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2133C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.281C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.251C>G
  hgvsp: ENSP00000453314.1:p.Ala84Gly
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.823C>G
  hgvsp: ENSP00000453246.1:p.Ala275Gly
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6452C>G
  hgvsp: ENSP00000261866.7:p.Ala2151Gly
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6452C>G
  hgvsp: ENSP00000396110.2:p.Ala2151Gly
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7491
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala2151Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

15-44862749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862749
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862749
    reference: chr 15
allele count: 2
allele frequency: 1.666972278251013e-5
allele num: 119978
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.280G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6112G>A
  hgvsp: ENSP00000445278.2:p.Ala2038Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6451G>A
  hgvsp: ENSP00000396110.2:p.Ala2151Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.250G>A
  hgvsp: ENSP00000453314.1:p.Ala84Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2132G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6451G>A
  hgvsp: ENSP00000261866.7:p.Ala2151Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.822G>A
  hgvsp: ENSP00000453246.1:p.Ala275Thr
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala2151Thr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

15-44862753-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862753
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862753
    reference: chr 15
allele count: 1
allele frequency: 8.33694600993764e-6
allele num: 119948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.818C>A
  hgvsp: ENSP00000453246.1:p.His273Gln
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6447C>A
  hgvsp: ENSP00000261866.7:p.His2149Gln
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.276C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2128C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6447C>A
  hgvsp: ENSP00000396110.2:p.His2149Gln
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6108C>A
  hgvsp: ENSP00000445278.2:p.His2036Gln
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.246C>A
  hgvsp: ENSP00000453314.1:p.His82Gln
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.516C>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7467
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His2149Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

15-44862763-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862763
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862763
    reference: chr 15
allele count: 1
allele frequency: 8.340283569641367e-6
allele num: 119900
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6437C>T
  hgvsp: ENSP00000261866.7:p.Thr2146Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.808C>T
  hgvsp: ENSP00000453246.1:p.Thr270Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6437C>T
  hgvsp: ENSP00000396110.2:p.Thr2146Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.236C>T
  hgvsp: ENSP00000453314.1:p.Thr79Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.506C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6098C>T
  hgvsp: ENSP00000445278.2:p.Thr2033Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.266C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2118C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr2146Ile
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

15-44862765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862765
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862765
    reference: chr 15
allele count: 2
allele frequency: 1.668529858341815e-5
allele num: 119866
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.504C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6435C>T
  hgvsp: ENST00000261866.7:c.6435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6435C>T
  hgvsp: ENST00000427534.2:c.6435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.806C>T
  hgvsp: ENST00000559511.1:c.806C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6096C>T
  hgvsp: ENST00000535302.2:c.6096C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.264C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.234C>T
  hgvsp: ENST00000558138.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2116C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23335
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu2145Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD

15-44862768-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862768
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862768
    reference: chr 15
allele count: 1
allele frequency: 8.348360382020972e-6
allele num: 119784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6093G>A
  hgvsp: ENSP00000445278.2:p.Met2031Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6432G>A
  hgvsp: ENSP00000396110.2:p.Met2144Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.501G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.803G>A
  hgvsp: ENSP00000453246.1:p.Met268Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.231G>A
  hgvsp: ENSP00000453314.1:p.Met77Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6432G>A
  hgvsp: ENSP00000261866.7:p.Met2144Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.261G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2113G>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met2144Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

15-44862770-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862770
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862770
    reference: chr 15
allele count: 1
allele frequency: 8.346966712296751e-6
allele num: 119804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.499A>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6430A>T
  hgvsp: ENSP00000396110.2:p.Met2144Leu
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6430A>T
  hgvsp: ENSP00000261866.7:p.Met2144Leu
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6091A>T
  hgvsp: ENSP00000445278.2:p.Met2031Leu
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.801A>T
  hgvsp: ENSP00000453246.1:p.Met268Leu
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.229A>T
  hgvsp: ENSP00000453314.1:p.Met77Leu
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.259A>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2111A>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met2144Leu
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

15-44862776-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862776
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862776
    reference: chr 15
allele count: 11
allele frequency: 9.197016822179861e-5
allele num: 119604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.795G>A
  hgvsp: ENSP00000453246.1:p.Ala266Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6424G>A
  hgvsp: ENSP00000396110.2:p.Ala2142Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2105G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6424G>A
  hgvsp: ENSP00000261866.7:p.Ala2142Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6085G>A
  hgvsp: ENSP00000445278.2:p.Ala2029Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.223G>A
  hgvsp: ENSP00000453314.1:p.Ala75Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.253G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.493G>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23284
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala2142Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

15-44862790-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862790
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862790
    reference: chr 15
allele count: 3
allele frequency: 2.5166096235152e-5
allele num: 119208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.239G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.209G>C
  hgvsp: ENSP00000453314.1:p.Arg70Pro
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6410G>C
  hgvsp: ENSP00000396110.2:p.Arg2137Pro
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.781G>C
  hgvsp: ENSP00000453246.1:p.Arg261Pro
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2091G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6071G>C
  hgvsp: ENSP00000445278.2:p.Arg2024Pro
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6410G>C
  hgvsp: ENSP00000261866.7:p.Arg2137Pro
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.479G>C
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22170
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg2137Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

15-44862790-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862790
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862790
    reference: chr 15
allele count: 8
allele frequency: 6.710958996040534e-5
allele num: 119208
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6410G>A
  hgvsp: ENSP00000261866.7:p.Arg2137Gln
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6071G>A
  hgvsp: ENSP00000445278.2:p.Arg2024Gln
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.209G>A
  hgvsp: ENSP00000453314.1:p.Arg70Gln
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2091G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6410G>A
  hgvsp: ENSP00000396110.2:p.Arg2137Gln
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.781G>A
  hgvsp: ENSP00000453246.1:p.Arg261Gln
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.239G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.479G>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg2137Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

15-44862791-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862791
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862791
    reference: chr 15
allele count: 2
allele frequency: 1.67768345468577e-5
allele num: 119212
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6409C>T
  hgvsp: ENSP00000261866.7:p.Arg2137Ter
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2090C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.238C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6070C>T
  hgvsp: ENSP00000445278.2:p.Arg2024Ter
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.780C>T
  hgvsp: ENSP00000453246.1:p.Arg261Ter
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6409C>T
  hgvsp: ENSP00000396110.2:p.Arg2137Ter
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.208C>T
  hgvsp: ENSP00000453314.1:p.Arg70Ter
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.478C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22242
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6975
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg2137Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

15-44862794-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862794
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862794
    reference: chr 15
allele count: 3
allele frequency: 2.517116391461941e-5
allele num: 119184
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6406A>G
  hgvsp: ENSP00000261866.7:p.Ile2136Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2087A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6067A>G
  hgvsp: ENSP00000445278.2:p.Ile2023Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.205A>G
  hgvsp: ENSP00000453314.1:p.Ile69Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.235A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.777A>G
  hgvsp: ENSP00000453246.1:p.Ile260Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.475A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6406A>G
  hgvsp: ENSP00000396110.2:p.Ile2136Val
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23184
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile2136Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

15-44862798-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862798
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862798
    reference: chr 15
allele count: 5
allele frequency: 4.202033784351626e-5
allele num: 118990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2083C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.201C>T
  hgvsp: ENST00000558138.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.471C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6402C>T
  hgvsp: ENST00000427534.2:c.6402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6402C>T
  hgvsp: ENST00000261866.7:c.6402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.773C>T
  hgvsp: ENST00000559511.1:c.773C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6063C>T
  hgvsp: ENST00000535302.2:c.6063C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.231C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly2134Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

15-44862805-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862805
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862805
    reference: chr 15
allele count: 6
allele frequency: 5.054419247228493e-5
allele num: 118708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.464T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.224T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6395T>C
  hgvsp: ENSP00000396110.2:p.Met2132Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6056T>C
  hgvsp: ENSP00000445278.2:p.Met2019Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2076T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6395T>C
  hgvsp: ENSP00000261866.7:p.Met2132Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.194T>C
  hgvsp: ENSP00000453314.1:p.Met65Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.766T>C
  hgvsp: ENSP00000453246.1:p.Met256Thr
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23018
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met2132Thr
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

15-44862809-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862809
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862809
    reference: chr 15
allele count: 3
allele frequency: 2.533227500717748e-5
allele num: 118426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6391C>T
  hgvsp: ENSP00000396110.2:p.His2131Tyr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6052C>T
  hgvsp: ENSP00000445278.2:p.His2018Tyr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.762C>T
  hgvsp: ENSP00000453246.1:p.His255Tyr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.220C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.190C>T
  hgvsp: ENSP00000453314.1:p.His64Tyr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6391C>T
  hgvsp: ENSP00000261866.7:p.His2131Tyr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.460C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2072C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22812
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His2131Tyr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

15-44862813-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862813
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862813
    reference: chr 15
allele count: 4
allele frequency: 3.38123415046492e-5
allele num: 118300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6387G>A
  hgvsp: ENST00000427534.2:c.6387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.758G>A
  hgvsp: ENST00000559511.1:c.758G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6048G>A
  hgvsp: ENST00000535302.2:c.6048G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6387G>A
  hgvsp: ENST00000261866.7:c.6387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2068G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.216G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.186G>A
  hgvsp: ENST00000558138.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.456G>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22267
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6630
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr2129Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

15-44862813-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862813
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862813
    reference: chr 15
allele count: 1
allele frequency: 8.4530853761623e-6
allele num: 118300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.186G>C
  hgvsp: ENST00000558138.1:c.186G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.456G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6387G>C
  hgvsp: ENST00000261866.7:c.6387G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2068G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.216G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6387G>C
  hgvsp: ENST00000427534.2:c.6387G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6048G>C
  hgvsp: ENST00000535302.2:c.6048G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.758G>C
  hgvsp: ENST00000559511.1:c.758G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2784
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6630
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr2129Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

15-44862814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862814
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862814
    reference: chr 15
allele count: 3
allele frequency: 2.536611763114283e-5
allele num: 118268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6047C>T
  hgvsp: ENSP00000445278.2:p.Thr2016Met
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6386C>T
  hgvsp: ENSP00000261866.7:p.Thr2129Met
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6386C>T
  hgvsp: ENSP00000396110.2:p.Thr2129Met
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2067C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.757C>T
  hgvsp: ENSP00000453246.1:p.Thr253Met
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.185C>T
  hgvsp: ENSP00000453314.1:p.Thr62Met
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.215C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.455C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22335
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr2129Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-44862816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862816
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862816
    reference: chr 15
allele count: 1
allele frequency: 8.469121582709441e-6
allele num: 118076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.755G>A
  hgvsp: ENST00000559511.1:c.755G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2065G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.183G>A
  hgvsp: ENST00000558138.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.453G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6384G>A
  hgvsp: ENST00000427534.2:c.6384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6384G>A
  hgvsp: ENST00000261866.7:c.6384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6045G>A
  hgvsp: ENST00000535302.2:c.6045G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.213G>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6551
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu2128Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

15-44862819-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862819
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862819
    reference: chr 15
allele count: 1
allele frequency: 8.475007203756124e-6
allele num: 117994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.450C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.180C>T
  hgvsp: ENST00000558138.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2062C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6381C>T
  hgvsp: ENST00000261866.7:c.6381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.752C>T
  hgvsp: ENST00000559511.1:c.752C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6381C>T
  hgvsp: ENST00000427534.2:c.6381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.210C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6042C>T
  hgvsp: ENST00000535302.2:c.6042C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr2127Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

15-44862820-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862820
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862820
    reference: chr 15
allele count: 1
allele frequency: 8.481620328747603e-6
allele num: 117902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.751C>A
  hgvsp: ENSP00000453246.1:p.Thr251Asn
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6041C>A
  hgvsp: ENSP00000445278.2:p.Thr2014Asn
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6380C>A
  hgvsp: ENSP00000396110.2:p.Thr2127Asn
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6380C>A
  hgvsp: ENSP00000261866.7:p.Thr2127Asn
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.449C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.179C>A
  hgvsp: ENSP00000453314.1:p.Thr60Asn
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.209C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2061C>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38070
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr2127Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

15-44862838-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862838
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862837
    reference: chr 15
allele count: 1
allele frequency: 8.597713008339781e-6
allele num: 116310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.160delC
  hgvsp: ENSP00000453314.1:p.Leu54TrpfsTer8
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6361delC
  hgvsp: ENSP00000396110.2:p.Leu2121TrpfsTer8
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.190delC
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6022delC
  hgvsp: ENSP00000445278.2:p.Leu2008TrpfsTer8
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6361delC
  hgvsp: ENSP00000261866.7:p.Leu2121TrpfsTer8
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.430delC
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.732delC
  hgvsp: ENSP00000453246.1:p.Leu245TrpfsTer8
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2042delC
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21648
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4651
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu2121TrpfsTer8
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: AG
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

15-44862840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862840
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862840
    reference: chr 15
allele count: 15
allele frequency: 1.29141125421861e-4
allele num: 116152
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6360C>T
  hgvsp: ENST00000261866.7:c.6360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.189C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.159C>T
  hgvsp: ENST00000558138.1:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.731C>T
  hgvsp: ENST00000559511.1:c.731C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6360C>T
  hgvsp: ENST00000427534.2:c.6360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6021C>T
  hgvsp: ENST00000535302.2:c.6021C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.429C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2041C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21530
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile2120Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

15-44862848-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862848
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862848
    reference: chr 15
allele count: 1
allele frequency: 8.720524626761546e-6
allele num: 114672
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6352C>G
  hgvsp: ENSP00000261866.7:p.Leu2118Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6013C>G
  hgvsp: ENSP00000445278.2:p.Leu2005Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.181C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.151C>G
  hgvsp: ENSP00000453314.1:p.Leu51Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.421C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6352C>G
  hgvsp: ENSP00000396110.2:p.Leu2118Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.723C>G
  hgvsp: ENSP00000453246.1:p.Leu242Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2033C>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5708
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu2118Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

15-44862853-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862853
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862853
    reference: chr 15
allele count: 3
allele frequency: 2.650083035935126e-5
allele num: 113204
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6347C>G
  hgvsp: ENSP00000261866.7:p.Thr2116Arg
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6008C>G
  hgvsp: ENSP00000445278.2:p.Thr2003Arg
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2028C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.146C>G
  hgvsp: ENSP00000453314.1:p.Thr49Arg
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.416C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.718C>G
  hgvsp: ENSP00000453246.1:p.Thr240Arg
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.176C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6347C>G
  hgvsp: ENSP00000396110.2:p.Thr2116Arg
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18281
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8191
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5494
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr2116Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ

15-44862862-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862862
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862862
    reference: chr 15
allele count: 16
allele frequency: 1.467432177119064e-4
allele num: 109034
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6344-6T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.173-6T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6005-6T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.413-6T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.143-6T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6344-6T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-6T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2019T>C
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17672
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15796
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10000
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11400
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.5e0
  variant carriers: 6
hgvs: c.6344-6T>C
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff

15-44862864-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862864
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862864
    reference: chr 15
allele count: 1
allele frequency: 9.225262458716951e-6
allele num: 108398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6344-8C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6005-8C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6344-8C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.143-8C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-8C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.173-8C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2017C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.413-8C>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2970
  bin: 3.25e1
  variant carriers: 0
hgvs: c.6344-8C>A
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum

15-44862865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862865
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862865
    reference: chr 15
allele count: 1
allele frequency: 9.224581665221482e-6
allele num: 108406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2016C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6005-9C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6344-9C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.143-9C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6344-9C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.173-9C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-9C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.413-9C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15585
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3047
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2979
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14023
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

15-44862869-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862869
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862869
    reference: chr 15
allele count: 3
allele frequency: 2.81780098810888e-5
allele num: 106466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.143-13C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.173-13C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-13C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.413-13C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6005-13C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2012C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6344-13C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6344-13C>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3294
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-44862871-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862871
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862871
    reference: chr 15
allele count: 3
allele frequency: 2.828800965564063e-5
allele num: 106052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-15T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2010T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6344-15T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.413-15T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6005-15T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6344-15T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.173-15T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.143-15T>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15412
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12894
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16434
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

15-44862873-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862873
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862873
    reference: chr 15
allele count: 2
allele frequency: 1.89771325552709e-5
allele num: 105390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.413-17A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6344-17A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.173-17A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-17A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6344-17A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2008A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6005-17A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.143-17A>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16414
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22221
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-44862875-GTAAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862875
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862870
    reference: chr 15
allele count: 1
allele frequency: 9.548180116869725e-6
allele num: 104732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-24_715-20delTCTTA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6344-24_6344-20delTCTTA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.143-24_143-20delTCTTA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.413-24_413-20delTCTTA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6005-24_6005-20delTCTTA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6344-24_6344-20delTCTTA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2001_275+2005delTCTTA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.173-24_173-20delTCTTA
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17788
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20866
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4010
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4066
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: GTAAGA
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD

15-44862880-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862880
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862880
    reference: chr 15
allele count: 2
allele frequency: 1.93794693901281e-5
allele num: 103202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.143-24T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-24T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.413-24T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6344-24T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6005-24T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+2001T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6344-24T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.173-24T>C
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9116
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4900
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-44862883-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862883
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862883
    reference: chr 15
allele count: 1
allele frequency: 9.776891339629651e-6
allele num: 102282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.173-27T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6344-27T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-27T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.413-27T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6344-27T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.143-27T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6005-27T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+1998T>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5384
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6076
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

15-44862884-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862884
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862884
    reference: chr 15
allele count: 212
allele frequency: 2.080144432670042e-3
allele num: 101916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.143-28C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6344-28C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6005-28C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.413-28C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6344-28C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-28C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.173-28C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+1997C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 8859
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 1.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 2.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22336
  bin: 1.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 9.75e1
  variant carriers: 200
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 19707
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 4
num of homozygotes: 3
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

15-44862893-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862893
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862893
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 95522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.143-37G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.413-37G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6344-37G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.173-37G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6005-37G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6344-37G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-37G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+1988G>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10497
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5776
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8039
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

15-44862894-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862894
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862894
    reference: chr 15
allele count: 1
allele frequency: 1.045653219566263e-5
allele num: 95634
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6344-38G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6005-38G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+1987G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.143-38G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.413-38G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.173-38G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6344-38G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-38G>C
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22412
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10768
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10610
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6197
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

15-44862899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862899
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862899
    reference: chr 15
allele count: 2
allele frequency: 2.149797918995614e-5
allele num: 93032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+1982G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-43G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.413-43G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6005-43G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6344-43G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.173-43G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.143-43G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6344-43G>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11014
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21599
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6191
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8048
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/15-44862906-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44862906
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44862906
    reference: chr 15
allele count: 1
allele frequency: 1.151118887558707e-5
allele num: 86872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.173-50G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6005-50G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.413-50G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-50G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.143-50G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+1975G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6344-50G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6344-50G>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12712
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8018
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6635
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

15-44864831-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44864831
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44864831
    reference: chr 15
allele count: 1
allele frequency: 8.259002312520648e-6
allele num: 121080
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.142+50A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-1975A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.8A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6343+50A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+50A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.412+50A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6004+50A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6343+50A>G
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9685
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4378
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4377
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

15-44864836-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44864836
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44864836
    reference: chr 15
allele count: 1
allele frequency: 8.257911078813503e-6
allele num: 121096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-1980T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+45T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.3T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6343+45T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6004+45T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.142+45T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6343+45T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.412+45T>A
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27276
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4490
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

15-44864838-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44864838
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44864838
    reference: chr 15
allele count: 2
allele frequency: 1.651718613217052e-5
allele num: 121086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.142+43G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6343+43G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6004+43G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-1982G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+43G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6343+43G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559347
  gene symbol: SPG11
  hgvsc: ENST00000559347.1:n.1G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.412+43G>C
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8695
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7517
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4509
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27285
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-44864840-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44864840
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44864840
    reference: chr 15
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-1984C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+41C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.142+41C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6343+41C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6004+41C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6343+41C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.412+41C>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4034
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

15-44864843-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44864843
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44864843
    reference: chr 15
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6343+38A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6343+38A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.412+38A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+38A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.142+38A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-1987A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6004+38A>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4420
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8586
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

15-44864846-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44864846
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44864846
    reference: chr 15
allele count: 2
allele frequency: 1.651009592365732e-5
allele num: 121138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.412+35C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-1990C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.142+35C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6343+35C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6004+35C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6343+35C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+35C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8140
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8772
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4466
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-44864853-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44864853
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44864853
    reference: chr 15
allele count: 5
allele frequency: 4.125140254768662e-5
allele num: 121208
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.6343+28T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453314
  ensembl transcript: ENST00000558138
  gene symbol: SPG11
  hgvsc: ENST00000558138.1:c.142+28T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000561268
  gene symbol: SPG11
  hgvsc: ENST00000561268.1:n.275+28T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000559933
  gene symbol: SPG11
  hgvsc: ENST00000559933.1:n.412+28T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453246
  ensembl transcript: ENST00000559511
  gene symbol: SPG11
  hgvsc: ENST00000559511.1:c.715-1997T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.6343+28T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.6004+28T>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8303
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4118
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27373
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
reference allele: A

GenotypeQuality
all individuals: 26209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15425
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8805
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1440
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.1001100110011e-4
allele num: 9090
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.029e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.387e0

FS
type: SiteQuality
SIO_000300: 1.803e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 1.137461e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.72e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.839e0

VQSLOD
type: SiteQuality
SIO_000300: -9.835e-1

QD
type: SiteQuality
SIO_000300: 1.006e1

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8806
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8790
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.092085e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

VQSLOD
type: SiteQuality
SIO_000300: -1.301e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.56e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.67e0

GenotypeQuality
all individuals: 1446
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8808
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 1
allele frequency: 5.040322580645161e-4
allele num: 1984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.248439450686642e-4
allele num: 16020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4264
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

FS
type: SiteQuality
SIO_000300: 1.261e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.17e-2

DP
type: SiteQuality
SIO_000300: 1.061909e6

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1809
bin: 2.5e0
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GenotypeQuality
all individuals: 225
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23715
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GenotypeQuality
all individuals: 205
bin: 9.25e1
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GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.186521120075937e-4
allele num: 8428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15054
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.836e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.58e0

DP
type: SiteQuality
SIO_000300: 1.050613e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.37e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.026e0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 2.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2484
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 207
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variant carriers: 1

GenotypeQuality
all individuals: 147
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.317696666227434e-4
allele num: 15178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.23e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 1.04e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 1.049075e6

VQSLOD
type: SiteQuality
SIO_000300: 1.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 190
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8806
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.69606512890095e-4
allele num: 11792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3426
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.310344827586207e-3
allele num: 232
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.21e-2

QD
type: SiteQuality
SIO_000300: 1.382e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 2.093e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.001498e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-1

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5790
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 7.25e1
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GenotypeQuality
all individuals: 206
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variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
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GenotypeQuality
all individuals: 333
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GenotypeQuality
all individuals: 123
bin: 8.75e1
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GenotypeQuality
all individuals: 175
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GenotypeQuality
all individuals: 168
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.699999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.24e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
SIO_000300: 1.00019e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 2.802e0

QD
type: SiteQuality
SIO_000300: 1.368e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 590
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8804
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 7.25e1
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GenotypeQuality
all individuals: 123
bin: 8.75e1
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GenotypeQuality
all individuals: 169
bin: 3.75e1
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GenotypeQuality
all individuals: 447
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GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.224589762429586e-4
allele num: 8166
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.19e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.000298e6

MQRankSum
type: SiteQuality
SIO_000300: -3.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

FS
type: SiteQuality
SIO_000300: 4.259e0

QD
type: SiteQuality
SIO_000300: 1.292e1

VQSLOD
type: SiteQuality
SIO_000300: -9.181e-1

GenotypeQuality
all individuals: 6245
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8807
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 206
bin: 9.25e1
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GenotypeQuality
all individuals: 76
bin: 4.25e1
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GenotypeQuality
all individuals: 129
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5274
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5258
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 7.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.738828029907842e-4
allele num: 11502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.066e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.33e-2

FS
type: SiteQuality
SIO_000300: 4.718e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

QD
type: SiteQuality
SIO_000300: 1.508e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.000613e6

GenotypeQuality
all individuals: 1171
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2395
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1599
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.555808656036447e-5
allele num: 65850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6030
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.502538e6

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.313e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
all individuals: 31775
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 2392
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2273
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variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.994637444625787e-4
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.124448799608035e-5
allele num: 16328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.99e-1

FS
type: SiteQuality
SIO_000300: 1.1187e1

MQ
type: SiteQuality
SIO_000300: 5.932e1

QD
type: SiteQuality
SIO_000300: 1.282e1

VQSLOD
type: SiteQuality
SIO_000300: -1.352e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.517437e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-1

GenotypeQuality
all individuals: 1317
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 569
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GenotypeQuality
all individuals: 1479
bin: 3.25e1
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GenotypeQuality
all individuals: 352
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GenotypeQuality
all individuals: 1361
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.128201985537444e-5
allele num: 16318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.899e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.054e0

VQSLOD
type: SiteQuality
SIO_000300: 3.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.342e1

DP
type: SiteQuality
SIO_000300: 1.536066e6

GenotypeQuality
all individuals: 1586
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7151
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.032692424334324e-5
allele num: 65948
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.878e1

QD
type: SiteQuality
SIO_000300: 1.127e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: -5.803e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.93e-1

DP
type: SiteQuality
SIO_000300: 1.538944e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-2

GenotypeQuality
all individuals: 7177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35477
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variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 1.784298176050753e-3
allele num: 10088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65968
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.782715615668365e-5
allele num: 11386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

FS
type: SiteQuality
SIO_000300: 1.471e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.775e0

QD
type: SiteQuality
SIO_000300: 1.221e1

DP
type: SiteQuality
SIO_000300: 1.544697e6

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.19e0

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2277
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7201
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515381118351265e-5
allele num: 65990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

FS
type: SiteQuality
SIO_000300: 3.12e0

DP
type: SiteQuality
SIO_000300: 1.548139e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

QD
type: SiteQuality
SIO_000300: 1.538e1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

MQ
type: SiteQuality
SIO_000300: 6.033e1

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2758
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 775
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7306
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37320
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.83477576711251e-5
allele num: 10168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.68e1

DP
type: SiteQuality
SIO_000300: 1.567195e6

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.508e0

FS
type: SiteQuality
SIO_000300: 8.098000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.262e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeQuality
all individuals: 659
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37904
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7325
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 7.952043063371667e-4
allele num: 16348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.575373e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.057e1

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.228e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 738
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 9.75e1
variant carriers: 746

GenotypeQuality
all individuals: 1272
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7291
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2231
bin: 7.75e1
variant carriers: 2

South Asian
type: Population
allele count: 67
allele frequency: 4.094353458812027e-3
allele num: 16364
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 604
allele frequency: 9.124418393860656e-3
allele num: 66196
num of homozygotes: 5

Latino
type: Population
allele count: 34
allele frequency: 2.976190476190476e-3
allele num: 11424
num of homozygotes: 1

African
type: Population
allele count: 16
allele frequency: 1.566170712607674e-3
allele num: 10216
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 9.153318077803204e-3
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 40
allele frequency: 6.559527714004591e-3
allele num: 6098
num of homozygotes: 1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

QD
type: SiteQuality
SIO_000300: 1.116e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

FS
type: SiteQuality
SIO_000300: 1.978e0

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

DP
type: SiteQuality
SIO_000300: 1.587715e6

GenotypeQuality
all individuals: 2235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7302
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38296
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2728
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537988311288834e-5
allele num: 65020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.254e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

DP
type: SiteQuality
SIO_000300: 1.591209e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

QD
type: SiteQuality
SIO_000300: 6.26e0

GenotypeQuality
all individuals: 548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2277
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2808
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.257623554153522e-4
allele num: 11412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6090
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.328e1

MQ
type: SiteQuality
SIO_000300: 5.913e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 5.132e0

DP
type: SiteQuality
SIO_000300: 1.58587e6

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
all individuals: 1380
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39251
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2345
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.221597849987784e-4
allele num: 16372
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 7.392e0

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.362e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

DP
type: SiteQuality
SIO_000300: 1.594106e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7488
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1377
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507068149621726e-5
allele num: 66354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.018e0

FS
type: SiteQuality
SIO_000300: 2.342e0

MQ
type: SiteQuality
SIO_000300: 5.898e1

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

QD
type: SiteQuality
SIO_000300: 1.028e1

DP
type: SiteQuality
SIO_000300: 1.599392e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.595e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.03e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.74089226573154e-5
allele num: 10266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507204437209863e-5
allele num: 66348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

FS
type: SiteQuality
SIO_000300: 6.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 9.109999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.417e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.44e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

DP
type: SiteQuality
SIO_000300: 1.599557e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 315
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.965405154399814e-4
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.356e0

DP
type: SiteQuality
SIO_000300: 1.600117e6

MQRankSum
type: SiteQuality
SIO_000300: -5.51e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.95e-1

FS
type: SiteQuality
SIO_000300: 1.201e0

VQSLOD
type: SiteQuality
SIO_000300: 7.57e-1

QD
type: SiteQuality
SIO_000300: 1.087e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.79e-1

GenotypeQuality
all individuals: 7491
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507613447911955e-5
allele num: 66330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 1.211e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.404e1

DP
type: SiteQuality
SIO_000300: 1.600307e6

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66330
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.74089226573154e-5
allele num: 10266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

QD
type: SiteQuality
SIO_000300: 1.404e1

FS
type: SiteQuality
SIO_000300: 1.211e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: 8.8e-1

DP
type: SiteQuality
SIO_000300: 1.600307e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.015772490123345e-5
allele num: 66318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.188e0

QD
type: SiteQuality
SIO_000300: 1.259e1

DP
type: SiteQuality
SIO_000300: 1.600339e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.742790335151988e-5
allele num: 10264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.616e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.51e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.102e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

DP
type: SiteQuality
SIO_000300: 1.598345e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508659706716553e-5
allele num: 66284
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.46e-1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.106e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.597967e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.018047926601074e-5
allele num: 66268
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11422
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Other
type: Population
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6090
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.57e-1

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.119e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

DP
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InbreedingCoeff
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SIO_000300: -3.0e-4

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.128201985537444e-5
allele num: 16318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 4.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

FS
type: SiteQuality
SIO_000300: 6.896e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.189e1

DP
type: SiteQuality
SIO_000300: 1.596469e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.957e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 2287
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509844184080203e-5
allele num: 66232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

FS
type: SiteQuality
SIO_000300: 2.444e0

DP
type: SiteQuality
SIO_000300: 1.595533e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.66e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.322340919647004e-4
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6056
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.930259816370385e-4
allele num: 10238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.787346221441125e-5
allele num: 11380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.558578987150416e-5
allele num: 66150
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.89e-1

QD
type: SiteQuality
SIO_000300: 1.376e1

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

FS
type: SiteQuality
SIO_000300: 2.474e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.594507e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

GenotypeQuality
all individuals: 2795
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.848428835489834e-4
allele num: 16230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.587431e6

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.089e1

FS
type: SiteQuality
SIO_000300: 1.107e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

GenotypeQuality
all individuals: 37540
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1298
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2795
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2061
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GenotypeQuality
all individuals: 2145
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.061217064370395e-4
allele num: 65962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.161429451632779e-5
allele num: 16230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

DP
type: SiteQuality
SIO_000300: 1.587431e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

QD
type: SiteQuality
SIO_000300: 1.089e1

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

FS
type: SiteQuality
SIO_000300: 1.107e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 578
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 673
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GenotypeQuality
all individuals: 579
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 588
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variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.803921568627451e-5
allele num: 10200
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.812125484666901e-5
allele num: 11348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.159e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.61e-1

FS
type: SiteQuality
SIO_000300: 2.326e0

DP
type: SiteQuality
SIO_000300: 1.587371e6

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.827683615819209e-5
allele num: 11328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.032324580023046e-5
allele num: 65956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.917e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.58457e6

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: -3.94e-1

QD
type: SiteQuality
SIO_000300: 1.435e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.87e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51828009231143e-5
allele num: 65864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.851851851851852e-4
allele num: 16200
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.15473441108545e-3
allele num: 866
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.204e1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 4.687e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.01e-1

DP
type: SiteQuality
SIO_000300: 1.582224e6

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.263e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6802
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.001166861143524e-4
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5938
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 5.26e-1

DP
type: SiteQuality
SIO_000300: 1.577421e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

QD
type: SiteQuality
SIO_000300: 1.094e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 741
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GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 824
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GenotypeQuality
all individuals: 1080
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GenotypeQuality
all individuals: 2782
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variant carriers: 3

GenotypeQuality
all individuals: 658
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.670464660850988e-4
allele num: 11234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5914
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

FS
type: SiteQuality
SIO_000300: 8.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

DP
type: SiteQuality
SIO_000300: 1.572326e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.705e0

QD
type: SiteQuality
SIO_000300: 1.219e1

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37837
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1974
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.784121320249777e-4
allele num: 11210
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.979414093428345e-4
allele num: 10104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

QD
type: SiteQuality
SIO_000300: 1.059e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.570817e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
all individuals: 1969
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2734
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.897070467141726e-5
allele num: 10104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65564
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

QD
type: SiteQuality
SIO_000300: 1.059e1

MQRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

DP
type: SiteQuality
SIO_000300: 1.570817e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

GenotypeQuality
all individuals: 641
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1970
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
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variant carriers: 0

GenotypeQuality
all individuals: 38099
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variant carriers: 0

GenotypeQuality
all individuals: 6619
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.5773573390296e-5
allele num: 65540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16118
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

FS
type: SiteQuality
SIO_000300: 2.972e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.344e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

DP
type: SiteQuality
SIO_000300: 1.57017e6

QD
type: SiteQuality
SIO_000300: 9.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

GenotypeQuality
all individuals: 547
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 608
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 668
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variant carriers: 0

GenotypeQuality
all individuals: 722
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variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2778
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.217358865953743e-5
allele num: 16084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.67e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

DP
type: SiteQuality
SIO_000300: 1.566095e6

QD
type: SiteQuality
SIO_000300: 8.69e0

FS
type: SiteQuality
SIO_000300: 1.357e0

VQSLOD
type: SiteQuality
SIO_000300: -1.523e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.94e-1

GenotypeQuality
all individuals: 295
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1931
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variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38424
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6494
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2776
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 642
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529285823520416e-5
allele num: 65390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.842e0

FS
type: SiteQuality
SIO_000300: 4.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 3.364e1

DP
type: SiteQuality
SIO_000300: 1.564959e6

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1928
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variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 281
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2775
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65344
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.942334460131238e-5
allele num: 10058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.562762e6

QD
type: SiteQuality
SIO_000300: 1.372e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: -5.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 2.359e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.997e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

VQSLOD
type: SiteQuality
SIO_000300: 6.56e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6094
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2772
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 485
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64550
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.182033096926714e-3
allele num: 846
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.831e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.803e0

MQRankSum
type: SiteQuality
SIO_000300: -1.636e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.82e-1

QD
type: SiteQuality
SIO_000300: 9.26e0

DP
type: SiteQuality
SIO_000300: 1.532013e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 546
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GenotypeQuality
all individuals: 518
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10980
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 1.514845485760452e-3
allele num: 9902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64476
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.125e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 1.530381e6

FS
type: SiteQuality
SIO_000300: 5.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

QD
type: SiteQuality
SIO_000300: 1.067e1

GenotypeQuality
all individuals: 6530
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
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GenotypeQuality
all individuals: 1146
bin: 3.25e1
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GenotypeQuality
all individuals: 720
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variant carriers: 0

GenotypeQuality
all individuals: 577
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GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34926
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2772
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.569563033651432e-5
allele num: 63712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15656
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.031e1

DP
type: SiteQuality
SIO_000300: 1.49669e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.932e1

FS
type: SiteQuality
SIO_000300: 1.377e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e0

GenotypeQuality
all individuals: 581
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2774
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 719
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5468
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.932242689681824e-4
allele num: 15526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.463336e6

VQSLOD
type: SiteQuality
SIO_000300: 6.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.465e1

MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.085e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15250
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.169668040789759e-4
allele num: 9218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.241305422778968e-5
allele num: 60670
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.832841691248771e-5
allele num: 10170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.401682018422107e-3
allele num: 4994
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.258178158027177e-4
allele num: 7948
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.163e2

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.107e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.074e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.08e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 3.65215e2

QD
type: SiteQuality
SIO_000300: 1.4e-1

DP
type: SiteQuality
SIO_000300: 1.388143e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1321
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9976
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.657605092162843e-5
allele num: 60328
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.22e-1

DP
type: SiteQuality
SIO_000300: 1.322525e6

VQSLOD
type: SiteQuality
SIO_000300: 6.870000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.008e1

FS
type: SiteQuality
SIO_000300: 2.304e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 518
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2636
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GenotypeQuality
all individuals: 4067
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.083658430862592e-4
allele num: 9228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60328
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.943e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.725e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

FS
type: SiteQuality
SIO_000300: 1.958e0

QD
type: SiteQuality
SIO_000300: 3.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

DP
type: SiteQuality
SIO_000300: 1.320661e6

GenotypeQuality
all individuals: 403
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3363
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4962
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.012072434607646e-4
allele num: 14910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.970000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.035e0

VQSLOD
type: SiteQuality
SIO_000300: -8.67e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 1.274164e6

FS
type: SiteQuality
SIO_000300: 7.94e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 2614
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59180
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.016129032258065e-4
allele num: 14880
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.212e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.262493e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 1.938e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14810
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.081165452653486e-4
allele num: 9610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58826
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.261e0

QD
type: SiteQuality
SIO_000300: 1.384e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.571999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.54e-1

DP
type: SiteQuality
SIO_000300: 1.242153e6

VQSLOD
type: SiteQuality
SIO_000300: 2.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 212
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14748
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.120322652924042e-4
allele num: 8926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9528
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.219595e6

MQRankSum
type: SiteQuality
SIO_000300: -3.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

MQ
type: SiteQuality
SIO_000300: 5.937e1

FS
type: SiteQuality
SIO_000300: 1.184e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

QD
type: SiteQuality
SIO_000300: 7.34e0

GenotypeQuality
all individuals: 2552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 886
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9378
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4702
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.466564980760565e-5
allele num: 57694
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.004e0

DP
type: SiteQuality
SIO_000300: 1.156253e6

VQSLOD
type: SiteQuality
SIO_000300: -7.91e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.115e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.146263182026593e-4
allele num: 8724
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14424
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4632
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57230
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.88e-1

DP
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

VQSLOD
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BaseQRankSum
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MQRankSum
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SIO_000300: 1.6e0

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 13
allele frequency: 9.02652409387585e-4
allele num: 14402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 163
allele frequency: 1.770584401477297e-2
allele num: 9206
num of homozygotes: 3

European (Non-Finnish)
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allele count: 35
allele frequency: 6.138412431162089e-4
allele num: 57018
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.150218541522889e-4
allele num: 8694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.648e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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QD
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

DP
type: SiteQuality
SIO_000300: 1.109578e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4216
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8154
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53668
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Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.203e0

DP
type: SiteQuality
SIO_000300: 1.011782e6

QD
type: SiteQuality
SIO_000300: 1.296e1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.012e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.226391954868776e-4
allele num: 8154
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4206
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MQRankSum
type: SiteQuality
SIO_000300: 8.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.98e-1

QD
type: SiteQuality
SIO_000300: 2.386e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.98e-1

DP
type: SiteQuality
SIO_000300: 1.010211e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.822191644689064e-5
allele num: 52326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4108
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.93e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.93e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 9.91411e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12908
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.045073418135711e-5
allele num: 48898
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5928
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
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MQ
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
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South Asian
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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QD
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FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501636784094663e-5
allele num: 66594
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European (Finnish)
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allele count: 0
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East Asian
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allele frequency: 0.0e0
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African
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South Asian
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Other
type: Population
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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QD
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SIO_000300: 8.51e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4010
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501997656883655e-5
allele num: 66578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.447422e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.994e0

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 5.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.269e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4513
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8122
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4364
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4438
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27301
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501501501501501e-5
allele num: 66600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 2.621e0

MQRankSum
type: SiteQuality
SIO_000300: -8.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.450944e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-1

QD
type: SiteQuality
SIO_000300: 1.409e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

GenotypeQuality
all individuals: 188
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4578
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4489
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27309
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4052
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

DP
type: SiteQuality
SIO_000300: 2.454985e6

MQRankSum
type: SiteQuality
SIO_000300: 3.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.095e0

MQ
type: SiteQuality
SIO_000300: 5.395e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.627e0

QD
type: SiteQuality
SIO_000300: 1.323e1

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27325
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4523
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4065
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.05e-1

FS
type: SiteQuality
SIO_000300: 2.411e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

QD
type: SiteQuality
SIO_000300: 1.099e1

DP
type: SiteQuality
SIO_000300: 2.459445e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.368e0

GenotypeQuality
all individuals: 4604
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4546
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2634
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4687
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.854307188282906e-4
allele num: 10378
num of homozygotes: 0