16-22385536-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385536
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385536
    reference: chr 16
allele count: 1
allele frequency: 8.749518776467294e-6
allele num: 114292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9201C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24366C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.79+16C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9201C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.79+16C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+692C>T
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2864
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

16-22385554-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385554
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385554
    reference: chr 16
allele count: 1
allele frequency: 8.452513777597457e-6
allele num: 118308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9219A>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+674A>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.77A>C
  hgvsp: ENSP00000268383.2:p.Gln26Pro
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24384A>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.77A>C
  hgvsp: ENSP00000455915.1:p.Gln26Pro
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9219A>C
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24191
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3401
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln26Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

16-22385555-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385555
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385555
    reference: chr 16
allele count: 2
allele frequency: 1.689617301681169e-5
allele num: 118370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24385C>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+673C>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.76C>G
  hgvsp: ENSP00000455915.1:p.Gln26Glu
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9220C>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.76C>G
  hgvsp: ENSP00000268383.2:p.Gln26Glu
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9220C>G
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2511
  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln26Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

16-22385564-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385564
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385564
    reference: chr 16
allele count: 1
allele frequency: 8.409863087428936e-6
allele num: 118908
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.67G>C
  hgvsp: ENSP00000455915.1:p.Asp23His
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24394G>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.67G>C
  hgvsp: ENSP00000268383.2:p.Asp23His
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9229G>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9229G>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+664G>C
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24693
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp23His
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

16-22385566-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385566
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385566
    reference: chr 16
allele count: 8
allele frequency: 6.724610392885363e-5
allele num: 118966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24396A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.65A>G
  hgvsp: ENSP00000455915.1:p.Gln22Arg
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9231A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9231A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.65A>G
  hgvsp: ENSP00000268383.2:p.Gln22Arg
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+662A>G
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6544
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24731
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14736
  bin: 9.75e1
  variant carriers: 8
hgvs: p.Gln22Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

16-22385568-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385568
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385568
    reference: chr 16
allele count: 1
allele frequency: 8.40152571707022e-6
allele num: 119026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24398C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.63C>T
  hgvsp: ENST00000561630.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.63C>T
  hgvsp: ENST00000268383.2:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9233C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+660C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9233C>T
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3410
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14733
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6549
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His21His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/16-22385573-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385573
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385573
    reference: chr 16
allele count: 1
allele frequency: 8.396869646995599e-6
allele num: 119092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.58G>T
  hgvsp: ENSP00000455915.1:p.Asp20Tyr
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.58G>T
  hgvsp: ENSP00000268383.2:p.Asp20Tyr
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24403G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9238G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9238G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+655G>T
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3409
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp20Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

16-22385573-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385573
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385573
    reference: chr 16
allele count: 2
allele frequency: 1.67937392939912e-5
allele num: 119092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.58G>A
  hgvsp: ENSP00000455915.1:p.Asp20Asn
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9238G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24403G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+655G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.58G>A
  hgvsp: ENSP00000268383.2:p.Asp20Asn
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9238G>A
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14736
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3006
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp20Asn
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

16-22385575-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385575
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385575
    reference: chr 16
allele count: 1
allele frequency: 8.39348665435622e-6
allele num: 119140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24405A>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9240A>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.56A>C
  hgvsp: ENSP00000455915.1:p.Tyr19Ser
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+653A>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.56A>C
  hgvsp: ENSP00000268383.2:p.Tyr19Ser
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9240A>C
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14735
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24672
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr19Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum

16-22385581-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385581
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385581
    reference: chr 16
allele count: 1
allele frequency: 8.389261744966442e-6
allele num: 119200
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.50C>T
  hgvsp: ENSP00000268383.2:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9246C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24411C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+647C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9246C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.50C>T
  hgvsp: ENSP00000455915.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6496
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro17Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

16-22385582-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385582
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385582
    reference: chr 16
allele count: 2
allele frequency: 1.677373903416811e-5
allele num: 119234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+646C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.49C>T
  hgvsp: ENSP00000455915.1:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24412C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9247C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9247C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.49C>T
  hgvsp: ENSP00000268383.2:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2995
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro17Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/16-22385583-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385583
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385583
    reference: chr 16
allele count: 4
allele frequency: 3.354297693920335e-5
allele num: 119250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24413G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.48G>T
  hgvsp: ENSP00000455915.1:p.Glu16Asp
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9248G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9248G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.48G>T
  hgvsp: ENSP00000268383.2:p.Glu16Asp
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+645G>T
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3403
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu16Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

16-22385585-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385585
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385585
    reference: chr 16
allele count: 1
allele frequency: 8.383635144198524e-6
allele num: 119280
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.46G>C
  hgvsp: ENSP00000268383.2:p.Glu16Gln
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24415G>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9250G>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+643G>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.46G>C
  hgvsp: ENSP00000455915.1:p.Glu16Gln
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9250G>C
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6511
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu16Gln
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

16-22385585-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385585
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385585
    reference: chr 16
allele count: 6
allele frequency: 5.030181086519115e-5
allele num: 119280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.46G>A
  hgvsp: ENSP00000455915.1:p.Glu16Lys
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9250G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+643G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.46G>A
  hgvsp: ENSP00000268383.2:p.Glu16Lys
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24415G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9250G>A
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6511
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu16Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

16-22385586-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385586
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385586
    reference: chr 16
allele count: 1
allele frequency: 8.394473078924836e-6
allele num: 119126
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.45C>G
  hgvsp: ENSP00000455915.1:p.Asp15Glu
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9251C>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.45C>G
  hgvsp: ENSP00000268383.2:p.Asp15Glu
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24416C>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+642C>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9251C>G
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10674
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2500
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6469
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp15Glu
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

16-22385589-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385589
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385589
    reference: chr 16
allele count: 7
allele frequency: 5.867364044793133e-5
allele num: 119304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24419G>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+639G>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9254G>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9254G>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.42G>C
  hgvsp: ENSP00000268383.2:p.Glu14Asp
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.42G>C
  hgvsp: ENSP00000455915.1:p.Glu14Asp
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10734
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2995
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6544
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14742
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24812
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu14Asp
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

16-22385594-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385594
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385594
    reference: chr 16
allele count: 18
allele frequency: 1.508219797898547e-4
allele num: 119346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9259A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.37A>G
  hgvsp: ENSP00000455915.1:p.Lys13Glu
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9259A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24424A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+634A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.37A>G
  hgvsp: ENSP00000268383.2:p.Lys13Glu
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14755
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 24883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2995
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys13Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

16-22385597-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385597
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385597
    reference: chr 16
allele count: 1
allele frequency: 8.379139294811638e-6
allele num: 119344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+631A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.34A>G
  hgvsp: ENSP00000268383.2:p.Met12Val
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24427A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.34A>G
  hgvsp: ENSP00000455915.1:p.Met12Val
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9262A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9262A>G
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14750
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6545
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met12Val
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

16-22385604-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385604
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385604
    reference: chr 16
allele count: 13
allele frequency: 1.089689857502096e-4
allele num: 119300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9269G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9269G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.27G>A
  hgvsp: ENST00000268383.2:c.27G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+624G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24434G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.27G>A
  hgvsp: ENST00000561630.1:c.27G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10782
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2991
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24771
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14760
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu9Glu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

16-22385613-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385613
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385613
    reference: chr 16
allele count: 7
allele frequency: 5.869430329861985e-5
allele num: 119262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.18G>A
  hgvsp: ENST00000561630.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9278G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24443G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+615G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9278G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.18G>A
  hgvsp: ENST00000268383.2:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24731
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6490
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2985
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu6Leu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

16-22385616-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385616
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385616
    reference: chr 16
allele count: 3
allele frequency: 2.516525182028655e-5
allele num: 119212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9281C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+612C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.15C>T
  hgvsp: ENST00000561630.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9281C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.15C>T
  hgvsp: ENST00000268383.2:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24446C>T
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6471
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn5Asn
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

16-22385629-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385629
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385629
    reference: chr 16
allele count: 1
allele frequency: 8.410428931875526e-6
allele num: 118900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9294T>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9294T>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.2T>C
  hgvsp: ENSP00000455915.1:p.Met1?
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.2T>C
  hgvsp: ENSP00000268383.2:p.Met1?
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+599T>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24459T>C
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23679
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6395
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

16-22385632-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385632
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385632
    reference: chr 16
allele count: 16
allele frequency: 1.347708894878706e-4
allele num: 118720
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9297A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.-2A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.-2A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+596A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24462A>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9297A>G
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19362
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10391
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8728
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6341
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/16-22385633-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385633
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385633
    reference: chr 16
allele count: 1
allele frequency: 8.424174009738345e-6
allele num: 118706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9298G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9298G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.-3G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.-3G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24463G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+595G>T
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23077
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3358
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

16-22385638-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385638
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385638
    reference: chr 16
allele count: 3
allele frequency: 2.537770484037424e-5
allele num: 118214
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.-8C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9303C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24468C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9303C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+590C>T
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6183
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

16-22385639-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385639
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385639
    reference: chr 16
allele count: 1
allele frequency: 8.461668641056017e-6
allele num: 118180
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.-9C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24469C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9304C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9304C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+589C>T
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9867
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6181
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3352
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

16-22385645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385645
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385645
    reference: chr 16
allele count: 1
allele frequency: 8.529075618784437e-6
allele num: 117246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9310G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.-15G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.-15G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24475G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9310G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+583G>A
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2353
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

16-22385646-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385646
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385646
    reference: chr 16
allele count: 1
allele frequency: 8.533005665915763e-6
allele num: 117192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.-16A>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24476A>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+582A>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9311A>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.-16A>C
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9311A>C
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2353
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3646
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5887
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

16-22385648-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385648
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385648
    reference: chr 16
allele count: 3
allele frequency: 2.568625100604483e-5
allele num: 116794
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9313C>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+580C>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9313C>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.-18C>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.-18C>G
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24478C>G
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14757
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19877
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3801
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3321
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

16-22385650-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385650
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385650
    reference: chr 16
allele count: 2
allele frequency: 1.71909919202338e-5
allele num: 116340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24480C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.-20C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9315C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9315C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.-20C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+578C>T
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3857
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5807
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14756
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-22385653-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385653
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385653
    reference: chr 16
allele count: 1
allele frequency: 8.838138334541212e-6
allele num: 113146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9318T>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.-23T>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24483T>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+575T>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9318T>A
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3203
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17769
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-22385661-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385661
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385661
    reference: chr 16
allele count: 1
allele frequency: 8.766393155200224e-6
allele num: 114072
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.-31G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9326G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9326G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24491G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.-31G>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+567G>T
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3376
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3022
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

16-22385662-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385662
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385662
    reference: chr 16
allele count: 2
allele frequency: 1.75337085546964e-5
allele num: 114066
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.-32G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24492G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9327G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+566G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9327G>A
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16375
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5612
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3925
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3376
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17585
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-22385663-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385663
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385663
    reference: chr 16
allele count: 1
allele frequency: 8.80266192496611e-6
allele num: 113602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9328C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.-33C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24493C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+565C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.-33C>T
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9328C>T
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3802
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14945
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

16-22385670-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385670
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385669
    reference: chr 16
allele count: 2
allele frequency: 1.770287494689137e-5
allele num: 112976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+557delG
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24501delG
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.-41delG
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9336delG
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.-41delG
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9336delG
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5383
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16341
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1715
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3347
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14945
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: TC
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

16-22385681-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22385681
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22385681
    reference: chr 16
allele count: 128
allele frequency: 1.12288581654853e-3
allele num: 113992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457432
  ensembl transcript: ENST00000564542
  gene symbol: CDR2
  hgvsc: ENST00000564542.1:c.-74-9346G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000454706
  ensembl transcript: ENST00000563573
  gene symbol: CDR2
  hgvsc: ENST00000563573.1:c.-33-24511G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl transcript: ENST00000569045
  gene symbol: CDR2
  hgvsc: ENST00000569045.1:n.740-9346G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000457289
  ensembl transcript: ENST00000567406
  gene symbol: CDR2
  hgvsc: ENST00000567406.1:c.-34+547G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000455915
  ensembl transcript: ENST00000561630
  gene symbol: CDR2
  hgvsc: ENST00000561630.1:c.-51G>A
  variant of: http://identifiers.org/hgnc/1799
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140743
  ensembl protein: ENSP00000268383
  ensembl transcript: ENST00000268383
  gene symbol: CDR2
  hgvsc: ENST00000268383.2:c.-51G>A
  variant of: http://identifiers.org/hgnc/1799
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15990
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5531
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8328
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3534
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

16-22472068-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22472068
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22472068
    reference: chr 16
allele count: 3
allele frequency: 9.339975093399751e-4
allele num: 3212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237296
  ensembl transcript: ENST00000337787
  gene symbol: SMG1P1
  hgvsc: ENST00000337787.3:n.394-40T>C
  variant of: http://identifiers.org/hgnc/44186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237296
  ensembl transcript: ENST00000446662
  gene symbol: SMG1P1
  hgvsc: ENST00000446662.1:n.826-40T>C
  variant of: http://identifiers.org/hgnc/44186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237296
  ensembl transcript: ENST00000308347
  gene symbol: SMG1P1
  hgvsc: ENST00000308347.6:n.494-40T>C
  variant of: http://identifiers.org/hgnc/44186
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237296
  ensembl transcript: ENST00000309865
  gene symbol: SMG1P1
  hgvsc: ENST00000309865.7:n.550-40T>C
  variant of: http://identifiers.org/hgnc/44186
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-22472111-CTAGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22472111
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22472107
    reference: chr 16
allele count: 2
allele frequency: 6.293266205160479e-4
allele num: 3178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237296
  ensembl transcript: ENST00000337787
  gene symbol: SMG1P1
  hgvsc: ENST00000337787.3:n.400_403delGTTA
  variant of: http://identifiers.org/hgnc/44186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237296
  ensembl transcript: ENST00000308347
  gene symbol: SMG1P1
  hgvsc: ENST00000308347.6:n.500_503delGTTA
  variant of: http://identifiers.org/hgnc/44186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237296
  ensembl transcript: ENST00000446662
  gene symbol: SMG1P1
  hgvsc: ENST00000446662.1:n.832_835delGTTA
  variant of: http://identifiers.org/hgnc/44186
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237296
  ensembl transcript: ENST00000309865
  gene symbol: SMG1P1
  hgvsc: ENST00000309865.7:n.556_559delGTTA
  variant of: http://identifiers.org/hgnc/44186
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: CTAGT
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

16-22472114-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22472114
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22472114
    reference: chr 16
allele count: 4
allele frequency: 1.261034047919294e-3
allele num: 3172
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237296
  ensembl transcript: ENST00000446662
  gene symbol: SMG1P1
  hgvsc: ENST00000446662.1:n.832G>C
  variant of: http://identifiers.org/hgnc/44186
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237296
  ensembl transcript: ENST00000309865
  gene symbol: SMG1P1
  hgvsc: ENST00000309865.7:n.556G>C
  variant of: http://identifiers.org/hgnc/44186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237296
  ensembl transcript: ENST00000337787
  gene symbol: SMG1P1
  hgvsc: ENST00000337787.3:n.400G>C
  variant of: http://identifiers.org/hgnc/44186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237296
  ensembl transcript: ENST00000308347
  gene symbol: SMG1P1
  hgvsc: ENST00000308347.6:n.500G>C
  variant of: http://identifiers.org/hgnc/44186
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

16-22539162-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22539162
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22539162
    reference: chr 16
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.2591G>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*395G>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.413G>T
  hgvsp: ENSP00000440703.1:p.Gly138Val
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.413G>T
  hgvsp: ENSP00000445388.1:p.Gly138Val
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000428548
  ensembl transcript: ENST00000517347
  gene symbol: NPIPB5
  hgvsc: ENST00000517347.1:c.*540G>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.413G>T
  hgvsp: ENSP00000430633.1:p.Gly138Val
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000538590
  gene symbol: NPIPB5
  hgvsc: ENST00000538590.1:n.270G>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000543997
  gene symbol: NPIPB5
  hgvsc: ENST00000543997.1:n.411G>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.413G>T
  hgvsp: ENSP00000431553.1:p.Gly138Val
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000441759
  ensembl transcript: ENST00000541664
  gene symbol: NPIPB5
  hgvsc: ENST00000541664.1:c.*376G>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000539929
  gene symbol: NPIPB5
  hgvsc: ENST00000539929.1:n.590G>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000449628
  ensembl transcript: ENST00000539604
  gene symbol: NPIPB5
  hgvsc: ENST00000539604.1:c.*58G>T
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly138Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

16-22539282-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22539282
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22539282
    reference: chr 16
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.533C>G
  hgvsp: ENSP00000431553.1:p.Thr178Ser
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*515C>G
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.533C>G
  hgvsp: ENSP00000430633.1:p.Thr178Ser
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.533C>G
  hgvsp: ENSP00000440703.1:p.Thr178Ser
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.2711C>G
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000538590
  gene symbol: NPIPB5
  hgvsc: ENST00000538590.1:n.390C>G
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000449628
  ensembl transcript: ENST00000539604
  gene symbol: NPIPB5
  hgvsc: ENST00000539604.1:c.*178C>G
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.533C>G
  hgvsp: ENSP00000445388.1:p.Thr178Ser
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000441759
  ensembl transcript: ENST00000541664
  gene symbol: NPIPB5
  hgvsc: ENST00000541664.1:c.*496C>G
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000543997
  gene symbol: NPIPB5
  hgvsc: ENST00000543997.1:n.531C>G
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Thr178Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

16-22545307-GCGGATGATAATCTCAAGACAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545307
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545286
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 1344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsp: ENSP00000430633.1:p.Asp336_Pro342del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsp: ENSP00000431553.1:p.Asp336_Pro342del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsp: ENSP00000440703.1:p.Asp336_Pro342del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsp: ENSP00000445388.1:p.Asp336_Pro342del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4403
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp336_Pro342del
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: GCGGATGATAATCTCAAGACAC
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

16-22545309-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545309
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545309
    reference: chr 16
allele count: 2
allele frequency: 1.449275362318841e-3
allele num: 1380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*987G>A
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1005G>A
  hgvsp: ENST00000528249.1:c.1005G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1005G>A
  hgvsp: ENST00000415833.2:c.1005G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1005G>A
  hgvsp: ENST00000517539.1:c.1005G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3183G>A
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1005G>A
  hgvsp: ENST00000424340.1:c.1005G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6620
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6499
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Ala335Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

16-22545332-CCGAGTGTCTGCTCACTCCCCTTCCACCCTCAGCTCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545332
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545296
    reference: chr 16
allele count: 2
allele frequency: 1.197604790419162e-3
allele num: 1670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsp: ENSP00000445388.1:p.Glu344_Leu355del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsp: ENSP00000440703.1:p.Glu344_Leu355del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsp: ENSP00000431553.1:p.Glu344_Leu355del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsp: ENSP00000430633.1:p.Glu344_Leu355del
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu344_Leu355del
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: CCGAGTGTCTGCTCACTCCCCTTCCACCCTCAGCTCT
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

16-22545339-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545339
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545339
    reference: chr 16
allele count: 288
allele frequency: 1.533546325878594e-1
allele num: 1878
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1035T>C
  hgvsp: ENST00000517539.1:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1035T>C
  hgvsp: ENST00000424340.1:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3213T>C
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1017T>C
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1035T>C
  hgvsp: ENST00000528249.1:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1035T>C
  hgvsp: ENST00000415833.2:c.1035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 7.5e0
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 17790
  bin: 2.5e0
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 17523
  bin: 7.5e0
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 1.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 6.75e1
  variant carriers: 10
hgvs: p.Cys345Cys
num of homozygotes: 41
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

16-22545342-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545342
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545342
    reference: chr 16
allele count: 118
allele frequency: 6.599552572706935e-2
allele num: 1788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1038G>A
  hgvsp: ENST00000528249.1:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3216G>A
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1020G>A
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1038G>A
  hgvsp: ENST00000424340.1:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1038G>A
  hgvsp: ENST00000517539.1:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1038G>A
  hgvsp: ENST00000415833.2:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17574
  bin: 2.5e0
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 7.5e0
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 9.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 6.25e1
  variant carriers: 7
hgvs: p.Leu346Leu
num of homozygotes: 7
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

16-22545342-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545342
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545342
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 1788
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1038G>C
  hgvsp: ENST00000528249.1:c.1038G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1038G>C
  hgvsp: ENST00000424340.1:c.1038G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3216G>C
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1020G>C
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1038G>C
  hgvsp: ENST00000415833.2:c.1038G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1038G>C
  hgvsp: ENST00000517539.1:c.1038G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17574
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu346Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

16-22545343-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545343
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545343
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 2102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1039C>T
  hgvsp: ENSP00000430633.1:p.Leu347Phe
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1021C>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1039C>T
  hgvsp: ENSP00000431553.1:p.Leu347Phe
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1039C>T
  hgvsp: ENSP00000440703.1:p.Leu347Phe
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1039C>T
  hgvsp: ENSP00000445388.1:p.Leu347Phe
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3217C>T
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18061
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu347Phe
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

16-22545353-TTCCACCCTCAGCTCTACCCTCAGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545353
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545329
    reference: chr 16
allele count: 1
allele frequency: 4.699248120300752e-4
allele num: 2128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsp: ENSP00000430633.1:p.Leu355_Ala362del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsp: ENSP00000440703.1:p.Leu355_Ala362del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsp: ENSP00000431553.1:p.Leu355_Ala362del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsp: ENSP00000445388.1:p.Leu355_Ala362del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu355_Ala362del
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: TTCCACCCTCAGCTCTACCCTCAGC
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

16-22545359-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545359
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545359
    reference: chr 16
allele count: 1
allele frequency: 4.721435316336166e-4
allele num: 2118
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1037C>G
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3233C>G
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1055C>G
  hgvsp: ENSP00000440703.1:p.Pro352Arg
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1055C>G
  hgvsp: ENSP00000430633.1:p.Pro352Arg
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1055C>G
  hgvsp: ENSP00000431553.1:p.Pro352Arg
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1055C>G
  hgvsp: ENSP00000445388.1:p.Pro352Arg
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18333
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro352Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

16-22545360-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545360
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545360
    reference: chr 16
allele count: 4
allele frequency: 2.010050251256282e-3
allele num: 1990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1056C>T
  hgvsp: ENST00000415833.2:c.1056C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1056C>T
  hgvsp: ENST00000424340.1:c.1056C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1056C>T
  hgvsp: ENST00000517539.1:c.1056C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3234C>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1038C>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1056C>T
  hgvsp: ENST00000528249.1:c.1056C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18364
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro352Pro
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

16-22545368-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545368
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545368
    reference: chr 16
allele count: 10
allele frequency: 1.020408163265306e-2
allele num: 980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1064T>C
  hgvsp: ENSP00000445388.1:p.Leu355Pro
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1046T>C
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3242T>C
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1064T>C
  hgvsp: ENSP00000431553.1:p.Leu355Pro
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1064T>C
  hgvsp: ENSP00000430633.1:p.Leu355Pro
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1064T>C
  hgvsp: ENSP00000440703.1:p.Leu355Pro
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17579
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17554
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Leu355Pro
num of homozygotes: 1
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

16-22545368-TACCCTCAGCTCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545368
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545356
    reference: chr 16
allele count: 2
allele frequency: 2.040816326530612e-3
allele num: 980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsp: ENSP00000430633.1:p.Pro359_Ala362del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsp: ENSP00000431553.1:p.Pro359_Ala362del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsp: ENSP00000440703.1:p.Pro359_Ala362del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsp: ENSP00000445388.1:p.Pro359_Ala362del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17554
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro359_Ala362del
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: TACCCTCAGCTCC
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

16-22545372-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545372
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545372
    reference: chr 16
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3246C>G
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1050C>G
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1068C>G
  hgvsp: ENST00000517539.1:c.1068C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1068C>G
  hgvsp: ENST00000424340.1:c.1068C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1068C>G
  hgvsp: ENST00000415833.2:c.1068C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1068C>G
  hgvsp: ENST00000528249.1:c.1068C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13792
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13948
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro356Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

16-22545390-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545390
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545390
    reference: chr 16
allele count: 3
allele frequency: 7.614213197969543e-3
allele num: 394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1086G>A
  hgvsp: ENST00000415833.2:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1068G>A
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1086G>A
  hgvsp: ENST00000528249.1:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1086G>A
  hgvsp: ENST00000517539.1:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1086G>A
  hgvsp: ENST00000424340.1:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3264G>A
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4845
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala362Ala
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-22545410-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545410
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545410
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1106G>C
  hgvsp: ENSP00000431553.1:p.Arg369Pro
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1106G>C
  hgvsp: ENSP00000440703.1:p.Arg369Pro
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1106G>C
  hgvsp: ENSP00000430633.1:p.Arg369Pro
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3284G>C
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1106G>C
  hgvsp: ENSP00000445388.1:p.Arg369Pro
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1088G>C
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg369Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

16-22545414-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545414
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545414
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3288C>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1110C>T
  hgvsp: ENST00000415833.2:c.1110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1092C>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1110C>T
  hgvsp: ENST00000424340.1:c.1110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1110C>T
  hgvsp: ENST00000528249.1:c.1110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1110C>T
  hgvsp: ENST00000517539.1:c.1110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6787
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala370Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

16-22545434-TTCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545434
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545365
    reference: chr 16
allele count: 1
allele frequency: 2.28310502283105e-3
allele num: 438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsp: ENSP00000431553.1:p.Leu385_Asn407del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsp: ENSP00000440703.1:p.Leu385_Asn407del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsp: ENSP00000430633.1:p.Leu385_Asn407del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsp: ENSP00000445388.1:p.Leu385_Asn407del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8402
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8287
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu385_Asn407del
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TTCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGC
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

16-22545446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545446
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545446
    reference: chr 16
allele count: 6
allele frequency: 1.395348837209302e-2
allele num: 430
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1142C>T
  hgvsp: ENSP00000440703.1:p.Ala381Val
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1124C>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1142C>T
  hgvsp: ENSP00000431553.1:p.Ala381Val
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1142C>T
  hgvsp: ENSP00000430633.1:p.Ala381Val
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1142C>T
  hgvsp: ENSP00000445388.1:p.Ala381Val
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3320C>T
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7306
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala381Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-22545447-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545447
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545447
    reference: chr 16
allele count: 15
allele frequency: 3.75e-2
allele num: 400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1143G>A
  hgvsp: ENST00000415833.2:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1143G>A
  hgvsp: ENST00000424340.1:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1143G>A
  hgvsp: ENST00000517539.1:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1143G>A
  hgvsp: ENST00000528249.1:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1125G>A
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3321G>A
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 4
hgvs: p.Ala381Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/16-22545460-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545460
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545460
    reference: chr 16
allele count: 1
allele frequency: 2.577319587628866e-3
allele num: 388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1156A>C
  hgvsp: ENSP00000445388.1:p.Lys386Gln
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1156A>C
  hgvsp: ENSP00000440703.1:p.Lys386Gln
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1138A>C
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1156A>C
  hgvsp: ENSP00000431553.1:p.Lys386Gln
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3334A>C
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1156A>C
  hgvsp: ENSP00000430633.1:p.Lys386Gln
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5581
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys386Gln
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

16-22545467-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545467
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545467
    reference: chr 16
allele count: 57
allele frequency: 1.696428571428572e-1
allele num: 336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1163C>T
  hgvsp: ENSP00000430633.1:p.Pro388Leu
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1163C>T
  hgvsp: ENSP00000440703.1:p.Pro388Leu
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1163C>T
  hgvsp: ENSP00000445388.1:p.Pro388Leu
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1145C>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1163C>T
  hgvsp: ENSP00000431553.1:p.Pro388Leu
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3341C>T
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 2.5e0
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.5e0
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3732
  bin: 7.5e0
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 10
hgvs: p.Pro388Leu
num of homozygotes: 9
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-22545472-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545472
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545472
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1168G>A
  hgvsp: ENSP00000430633.1:p.Glu390Lys
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3346G>A
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1150G>A
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1168G>A
  hgvsp: ENSP00000445388.1:p.Glu390Lys
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1168G>A
  hgvsp: ENSP00000431553.1:p.Glu390Lys
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1168G>A
  hgvsp: ENSP00000440703.1:p.Glu390Lys
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu390Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

16-22545475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545475
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545475
    reference: chr 16
allele count: 2
allele frequency: 6.896551724137931e-3
allele num: 290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1171C>T
  hgvsp: ENSP00000445388.1:p.Arg391Cys
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3349C>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1171C>T
  hgvsp: ENSP00000440703.1:p.Arg391Cys
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1171C>T
  hgvsp: ENSP00000431553.1:p.Arg391Cys
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1153C>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1171C>T
  hgvsp: ENSP00000430633.1:p.Arg391Cys
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg391Cys
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

16-22545476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545476
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545476
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1154G>A
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1172G>A
  hgvsp: ENSP00000431553.1:p.Arg391His
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1172G>A
  hgvsp: ENSP00000430633.1:p.Arg391His
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3350G>A
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1172G>A
  hgvsp: ENSP00000440703.1:p.Arg391His
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1172G>A
  hgvsp: ENSP00000445388.1:p.Arg391His
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg391His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

16-22545476-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545476
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545476
    reference: chr 16
allele count: 1
allele frequency: 3.333333333333334e-3
allele num: 300
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1172G>T
  hgvsp: ENSP00000440703.1:p.Arg391Leu
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1172G>T
  hgvsp: ENSP00000445388.1:p.Arg391Leu
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1172G>T
  hgvsp: ENSP00000430633.1:p.Arg391Leu
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1172G>T
  hgvsp: ENSP00000431553.1:p.Arg391Leu
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1154G>T
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3350G>T
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg391Leu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

16-22545487-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545487
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545487
    reference: chr 16
allele count: 2
allele frequency: 2.127659574468085e-2
allele num: 94
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3361C>G
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1165C>G
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1183C>G
  hgvsp: ENSP00000445388.1:p.Pro395Ala
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1183C>G
  hgvsp: ENSP00000431553.1:p.Pro395Ala
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1183C>G
  hgvsp: ENSP00000430633.1:p.Pro395Ala
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1183C>G
  hgvsp: ENSP00000440703.1:p.Pro395Ala
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro395Ala
num of homozygotes: 1
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

16-22545491-TTCCACCCTCAGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545491
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545479
    reference: chr 16
allele count: 2
allele frequency: 2.777777777777778e-2
allele num: 72
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsp: ENSP00000431553.1:p.Pro401_Ala404del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsp: ENSP00000440703.1:p.Pro401_Ala404del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsp: ENSP00000430633.1:p.Pro401_Ala404del
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsp: ENSP00000445388.1:p.Pro401_Ala404del
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro401_Ala404del
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: TTCCACCCTCAGC
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

16-22545539-CCGAGCGTCTGCGGGGGCCG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545539
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545520
    reference: chr 16
allele count: 6
allele frequency: 6.622516556291391e-3
allele num: 906
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsp: ENSP00000430633.1:p.Glu413PhefsTer164
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsp: ENSP00000445388.1:p.Glu413PhefsTer164
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsp: ENSP00000440703.1:p.Glu413PhefsTer164
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsp: ENSP00000431553.1:p.Glu413PhefsTer164
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13861
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu413PhefsTer164
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: CCGAGCGTCTGCGGGGGCCG
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

16-22545540-C-CGAGCGTCTGCGGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545540
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545553
    reference: chr 16
allele count: 92
allele frequency: 4.107142857142857e-2
allele num: 2240
alternate allele: CGAGCGTCTGCGGG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsp: ENSP00000440703.1:p.Pro418AlafsTer12
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsp: ENSP00000445388.1:p.Pro418AlafsTer12
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsp: ENSP00000431553.1:p.Pro418AlafsTer12
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsp: ENSP00000430633.1:p.Pro418AlafsTer12
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22357
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.75e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20753
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro418AlafsTer12
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

16-22545545-G-GTCTGCGGGGAGCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545545
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545558
    reference: chr 16
allele count: 81
allele frequency: 2.454545454545454e-2
allele num: 3300
alternate allele: GTCTGCGGGGAGCT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsp: ENSP00000431553.1:p.Pro418AlafsTer12
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsp: ENSP00000445388.1:p.Pro418AlafsTer12
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsp: ENSP00000430633.1:p.Pro418AlafsTer12
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsp: ENSP00000440703.1:p.Pro418AlafsTer12
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23268
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2450
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro418AlafsTer12
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

16-22545554-GGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545554
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545552
    reference: chr 16
allele count: 2
allele frequency: 5.659309564233164e-4
allele num: 3534
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3429_3430delGC
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1251_1252delGC
  hgvsp: ENSP00000440703.1:p.Pro418AlafsTer7
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1251_1252delGC
  hgvsp: ENSP00000445388.1:p.Pro418AlafsTer7
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1251_1252delGC
  hgvsp: ENSP00000430633.1:p.Pro418AlafsTer7
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1251_1252delGC
  hgvsp: ENSP00000431553.1:p.Pro418AlafsTer7
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1233_*1234delGC
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23218
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20918
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4259
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro418AlafsTer7
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: GGC
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

16-22545555-G-GTCCAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22545555
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 22545560
    reference: chr 16
allele count: 1
allele frequency: 3.130870381966186e-4
allele num: 3194
alternate allele: GTCCAT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000445388
  ensembl transcript: ENST00000415833
  gene symbol: NPIPB5
  hgvsc: ENST00000415833.2:c.1251_1252insTCCAT
  hgvsp: ENSP00000445388.1:p.Pro418SerfsTer167
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000243716
  ensembl transcript: ENST00000415654
  gene symbol: NPIPB5
  hgvsc: ENST00000415654.1:n.3429_3430insTCCAT
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000429898
  ensembl transcript: ENST00000521555
  gene symbol: NPIPB5
  hgvsc: ENST00000521555.2:c.*1233_*1234insTCCAT
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000430633
  ensembl transcript: ENST00000517539
  gene symbol: NPIPB5
  hgvsc: ENST00000517539.1:c.1251_1252insTCCAT
  hgvsp: ENSP00000430633.1:p.Pro418SerfsTer167
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000431553
  ensembl transcript: ENST00000528249
  gene symbol: NPIPB5
  hgvsc: ENST00000528249.1:c.1251_1252insTCCAT
  hgvsp: ENSP00000431553.1:p.Pro418SerfsTer167
  variant of: http://identifiers.org/hgnc/37233
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000243716
  ensembl protein: ENSP00000440703
  ensembl transcript: ENST00000424340
  gene symbol: NPIPB5
  hgvsc: ENST00000424340.1:c.1251_1252insTCCAT
  hgvsp: ENSP00000440703.1:p.Pro418SerfsTer167
  variant of: http://identifiers.org/hgnc/37233
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20641
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro418SerfsTer167
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2954
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6166
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21906
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14705
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.21036068748487e-4
allele num: 8262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

DP
type: SiteQuality
SIO_000300: 1.856532e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
type: SiteQuality
SIO_000300: 1.085e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

FS
type: SiteQuality
SIO_000300: 1.832e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.676e0

GenotypeQuality
all individuals: 14728
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3001
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2361
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2511
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6496
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547125440930751e-5
allele num: 64636
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.87e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.43e1

MQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.41e-1

FS
type: SiteQuality
SIO_000300: 3.335e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

DP
type: SiteQuality
SIO_000300: 1.901074e6

GenotypeQuality
all individuals: 265
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14730
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546168594223514e-5
allele num: 64676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087168249330411e-5
allele num: 16428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-2

DP
type: SiteQuality
SIO_000300: 1.902252e6

FS
type: SiteQuality
SIO_000300: 7.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.18e-1

QD
type: SiteQuality
SIO_000300: 1.249e1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3411
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14728
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6544
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538745614574998e-5
allele num: 64988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.455e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.90832e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

QD
type: SiteQuality
SIO_000300: 1.259e1

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3409
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 8
allele frequency: 6.969855375500958e-4
allele num: 11478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 6.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 1.289e1

DP
type: SiteQuality
SIO_000300: 1.909785e6

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24787
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1647
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65064
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.709284096847239e-5
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.834e0

FS
type: SiteQuality
SIO_000300: 4.803e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.503e1

MQRankSum
type: SiteQuality
SIO_000300: -7.45e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

DP
type: SiteQuality
SIO_000300: 1.910173e6

VQSLOD
type: SiteQuality
SIO_000300: 4.81e-1

GenotypeQuality
all individuals: 2520
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24656
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6555
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14736
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2362
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1647
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535815210713847e-5
allele num: 65112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

MQ
type: SiteQuality
SIO_000300: 5.912e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 1.910843e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24656
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3409
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1647
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.946290033817386e-5
allele num: 10054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535815210713847e-5
allele num: 65112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 1.910843e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2522
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3411
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535202186127913e-5
allele num: 65138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.68e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.296e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.027e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.91097e6

FS
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2510
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24525
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2996
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3403
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.177e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 9.320000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 1.791e1

MQ
type: SiteQuality
SIO_000300: 5.93e1

DP
type: SiteQuality
SIO_000300: 1.912853e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6506
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14737
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.741250217656277e-4
allele num: 11486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

FS
type: SiteQuality
SIO_000300: 2.722e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
SIO_000300: 1.085e1

DP
type: SiteQuality
SIO_000300: 1.91309e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14737
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2360
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2995
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6514
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.701457451810061e-4
allele num: 8508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.157e0

FS
type: SiteQuality
SIO_000300: 4.108e0

DP
type: SiteQuality
SIO_000300: 1.913367e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e0

VQSLOD
type: SiteQuality
SIO_000300: -9.242e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.576e0

QD
type: SiteQuality
SIO_000300: 1.018e1

GenotypeQuality
all individuals: 2503
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24648
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14741
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533319022355791e-5
allele num: 65218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.148e1

MQ
type: SiteQuality
SIO_000300: 5.916e1

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

DP
type: SiteQuality
SIO_000300: 1.913159e6

FS
type: SiteQuality
SIO_000300: 1.824e0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2503
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24648
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14741
bin: 9.75e1
variant carriers: 6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.199914134134748e-5
allele num: 65218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

FS
type: SiteQuality
SIO_000300: 1.824e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

MQ
type: SiteQuality
SIO_000300: 5.916e1

DP
type: SiteQuality
SIO_000300: 1.913159e6

QD
type: SiteQuality
SIO_000300: 1.148e1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
all individuals: 1640
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2995
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24471
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14737
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.706251088281386e-5
allele num: 11486
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0574e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.18e-1

DP
type: SiteQuality
SIO_000300: 1.912918e6

MQRankSum
type: SiteQuality
SIO_000300: 6.4e-2

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

MQ
type: SiteQuality
SIO_000300: 5.827e1

VQSLOD
type: SiteQuality
SIO_000300: -1.942e0

GenotypeQuality
all individuals: 101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65226
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.703220191470844e-5
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.923000987166831e-4
allele num: 10130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.205e0

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

QD
type: SiteQuality
SIO_000300: 1.144e1

DP
type: SiteQuality
SIO_000300: 1.913303e6

GenotypeQuality
all individuals: 207
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3399
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.130644024154737e-5
allele num: 65246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.218450826805918e-3
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.18e-1

QD
type: SiteQuality
SIO_000300: 1.304e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 5.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.054e0

DP
type: SiteQuality
SIO_000300: 1.915126e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3399
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.914265e6

VQSLOD
type: SiteQuality
SIO_000300: 7.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

FS
type: SiteQuality
SIO_000300: 1.383e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

QD
type: SiteQuality
SIO_000300: 1.36e1

GenotypeQuality
all individuals: 235
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2356
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3397
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.407337723424271e-4
allele num: 8504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.038405444822557e-4
allele num: 16456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.302e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.0e1

DP
type: SiteQuality
SIO_000300: 1.914338e6

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14762
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.080505898090721e-5
allele num: 16446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.669417431051937e-5
allele num: 65194
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

FS
type: SiteQuality
SIO_000300: 5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.899e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

DP
type: SiteQuality
SIO_000300: 1.913208e6

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

GenotypeQuality
all individuals: 14762
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3380
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
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variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24624
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.604899613188433e-5
allele num: 65148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e-1

MQ
type: SiteQuality
SIO_000300: 5.797e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.744e0

DP
type: SiteQuality
SIO_000300: 1.912112e6

QD
type: SiteQuality
SIO_000300: 2.095e1

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

FS
type: SiteQuality
SIO_000300: 1.527e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.734e-1

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2356
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14757
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539266693347289e-5
allele num: 64966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.17e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: 8.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.38e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

DP
type: SiteQuality
SIO_000300: 1.899958e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

QD
type: SiteQuality
SIO_000300: 8.73e0

GenotypeQuality
all individuals: 2355
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14770
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 2464
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23042
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2979
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.960159362549801e-5
allele num: 10040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.313101406365655e-4
allele num: 64848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.894743e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.254e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 5.591e0

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
all individuals: 2225
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2462
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6339
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14761
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2354
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2980
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542115165160534e-5
allele num: 64846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.46e-1

QD
type: SiteQuality
SIO_000300: 1.201e1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e-1

DP
type: SiteQuality
SIO_000300: 1.894208e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.916e1

FS
type: SiteQuality
SIO_000300: 4.718e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-2

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21800
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2990
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3349
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2356
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14764
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 398
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.742787200559538e-5
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.100198412698413e-5
allele num: 64512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.686e0

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 1.878122e6

QD
type: SiteQuality
SIO_000300: 1.187e1

GenotypeQuality
all individuals: 1634
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14762
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 510
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2356
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2973
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183151916706105e-4
allele num: 8452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.599e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.877744e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 1.476e1

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14755
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2396
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564896247378799e-5
allele num: 63902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.169e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.18e-1

FS
type: SiteQuality
SIO_000300: 2.112e1

DP
type: SiteQuality
SIO_000300: 1.861756e6

MQRankSum
type: SiteQuality
SIO_000300: -5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeQuality
all individuals: 720
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2962
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14755
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1629
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565435190983093e-5
allele num: 63880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.234e0

FS
type: SiteQuality
SIO_000300: 9.394e0

DP
type: SiteQuality
SIO_000300: 1.86141e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

GenotypeQuality
all individuals: 1209
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2968
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5838
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.715943031408181e-5
allele num: 63614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-1

FS
type: SiteQuality
SIO_000300: 2.162e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.066e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.856362e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.044e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19293
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3322
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2967
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.09643605870021e-4
allele num: 9540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.051e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

DP
type: SiteQuality
SIO_000300: 1.850255e6

MQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

GenotypeQuality
all individuals: 1048
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2898
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5423
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3330
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14739
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2328
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.131207847946045e-5
allele num: 16310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61408
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-1

QD
type: SiteQuality
SIO_000300: 6.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

FS
type: SiteQuality
SIO_000300: 1.735e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.315e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.84e-1

DP
type: SiteQuality
SIO_000300: 1.829061e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

GenotypeQuality
all individuals: 1016
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5624
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14947
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1839
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17535
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9058
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.153088850603002e-5
allele num: 16252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.77e0

DP
type: SiteQuality
SIO_000300: 1.819233e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.552e0

MQRankSum
type: SiteQuality
SIO_000300: -8.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.516e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.228e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3020
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 578
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14948
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.229452607782981e-5
allele num: 61930
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.732e1

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

QD
type: SiteQuality
SIO_000300: 4.63e0

DP
type: SiteQuality
SIO_000300: 1.818743e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.704e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-2

GenotypeQuality
all individuals: 17510
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2374
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8340
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African
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allele count: 1
allele frequency: 1.111605157847932e-4
allele num: 8996
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61708
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

DP
type: SiteQuality
SIO_000300: 1.816272e6

MQRankSum
type: SiteQuality
SIO_000300: -1.073e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

QD
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.146e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.254283137962128e-4
allele num: 8872
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61410
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 7.17e-1

ReadPosRankSum
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SIO_000300: 1.35e-1

VQSLOD
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MQ
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SIO_000300: 6.033e1

MQRankSum
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DP
type: SiteQuality
SIO_000300: 1.806086e6

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 128

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6534
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South Asian
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allele count: 6
allele frequency: 3.743916136278548e-4
allele num: 16026
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.612487100103199e-5
allele num: 62016
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9088
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
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East Asian
type: Population
allele count: 121
allele frequency: 1.478494623655914e-2
allele num: 8184
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.416e1

MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1

BaseQRankSum
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MQ
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SIO_000300: 5.966e1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.65e-1

InbreedingCoeff
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SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.841025e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 1.614639397201292e-3
allele num: 1858
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10
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African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 166
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Latino
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allele frequency: 0.0e0
allele num: 114
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MQ
type: SiteQuality
SIO_000300: 2.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.748e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 114
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
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African
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allele count: 2
allele frequency: 2.604166666666667e-3
allele num: 768
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1840
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MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.398e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.03e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.47e-2

QD
type: SiteQuality
SIO_000300: 7.99e0

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

DP
type: SiteQuality
SIO_000300: 3.8877e4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1844
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 4
allele frequency: 5.333333333333333e-3
allele num: 750
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Other
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

FS
type: SiteQuality
SIO_000300: 8.63e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
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DP
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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East Asian
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allele frequency: NaN
allele num: 0
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Other
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allele frequency: NaN
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South Asian
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allele frequency: NaN
allele num: 0
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.433e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
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ClippingRankSum
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DP
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FS
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MQRankSum
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QD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele frequency: NaN
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African
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allele frequency: NaN
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Other
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Latino
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allele frequency: NaN
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European (Finnish)
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allele frequency: NaN
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East Asian
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MQ
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SIO_000300: 2.648e1

DP
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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Other
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African
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East Asian
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Latino
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 606
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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FS
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DP
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QD
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ReadPosRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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African
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Latino
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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allele num: 250
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.97e-2

FS
type: SiteQuality
SIO_000300: 6.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.231e0

VQSLOD
type: SiteQuality
SIO_000300: -1.104e0

QD
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 2.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.88e-1

DP
type: SiteQuality
SIO_000300: 6.7683e4

GenotypeQuality
all individuals: 1496
bin: 2.25e1
variant carriers: 11

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 24

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 16

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 10

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 16

GenotypeQuality
all individuals: 37
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 132
bin: 9.75e1
variant carriers: 130

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

African
type: Population
allele count: 265
allele frequency: 4.944029850746269e-1
allele num: 536
num of homozygotes: 39

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.451612903225806e-2
allele num: 124
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.0e-2
allele num: 20
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 1.666666666666667e-2
allele num: 840
num of homozygotes: 2

VQSLOD
type: SiteQuality
SIO_000300: -4.015e0

DP
type: SiteQuality
SIO_000300: 7.2523e4

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.093e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-2

MQ
type: SiteQuality
SIO_000300: 2.772e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 145
bin: 1.25e1
variant carriers: 15

GenotypeQuality
all individuals: 1442
bin: 2.25e1
variant carriers: 11

GenotypeQuality
all individuals: 16584
bin: 7.5e0
variant carriers: 31

GenotypeQuality
all individuals: 34
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 32
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 11
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 111
bin: 6.75e1
variant carriers: 10

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 8

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 3.629032258064516e-2
allele num: 248
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 91
allele frequency: 1.151898734177215e-1
allele num: 790
num of homozygotes: 5

Latino
type: Population
allele count: 4
allele frequency: 3.225806451612903e-2
allele num: 124
num of homozygotes: 1

African
type: Population
allele count: 11
allele frequency: 2.083333333333333e-2
allele num: 528
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.166666666666666e-2
allele num: 72
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.880000000000001e0

FS
type: SiteQuality
SIO_000300: 1.23736e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.028e-1

DP
type: SiteQuality
SIO_000300: 7.6346e4

VQSLOD
type: SiteQuality
SIO_000300: -7.584999999999999e1

MQRankSum
type: SiteQuality
SIO_000300: 2.37e0

MQ
type: SiteQuality
SIO_000300: 2.9e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

GenotypeQuality
all individuals: 16584
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

MQRankSum
type: SiteQuality
SIO_000300: 2.37e0

MQ
type: SiteQuality
SIO_000300: 2.9e1

FS
type: SiteQuality
SIO_000300: 1.23736e2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.028e-1

QD
type: SiteQuality
SIO_000300: 8.880000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.584999999999999e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

DP
type: SiteQuality
SIO_000300: 7.6346e4

GenotypeQuality
all individuals: 205
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

DP
type: SiteQuality
SIO_000300: 7.512e4

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

QD
type: SiteQuality
SIO_000300: 1.913e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.46e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.799999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.292e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.47e-1

GenotypeQuality
all individuals: 18206
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.111111111111111e-2
allele num: 90
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.47e-1

FS
type: SiteQuality
SIO_000300: 3.233e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-2

DP
type: SiteQuality
SIO_000300: 7.6094e4

QD
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

MQ
type: SiteQuality
SIO_000300: 2.906e1

VQSLOD
type: SiteQuality
SIO_000300: -4.962e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.024590163934426e-3
allele num: 976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.604e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.97e-2

FS
type: SiteQuality
SIO_000300: 5.347e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.816e0

MQ
type: SiteQuality
SIO_000300: 2.299e1

QD
type: SiteQuality
SIO_000300: 3.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e-1

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1781
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18397
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 7.575757575757576e-3
allele num: 132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.188183807439825e-3
allele num: 914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.496503496503497e-3
allele num: 286
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.1043e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.97e-2

DP
type: SiteQuality
SIO_000300: 7.4842e4

VQSLOD
type: SiteQuality
SIO_000300: -5.527e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

MQ
type: SiteQuality
SIO_000300: 2.721e1

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 51
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 2.688172043010753e-2
allele num: 186
num of homozygotes: 1

East Asian
type: Population
allele count: 2
allele frequency: 5.263157894736842e-2
allele num: 38
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.666666666666667e-2
allele num: 60
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.504504504504504e-3
allele num: 444
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.08e-2

FS
type: SiteQuality
SIO_000300: 8.9779e1

VQSLOD
type: SiteQuality
SIO_000300: -6.307e0

MQRankSum
type: SiteQuality
SIO_000300: -1.067e0

DP
type: SiteQuality
SIO_000300: 5.8804e4

QD
type: SiteQuality
SIO_000300: 7.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 2.9e1

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.504504504504504e-3
allele num: 444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.067e0

QD
type: SiteQuality
SIO_000300: 7.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 5.8804e4

MQ
type: SiteQuality
SIO_000300: 2.9e1

VQSLOD
type: SiteQuality
SIO_000300: -6.307e0

FS
type: SiteQuality
SIO_000300: 8.9779e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.854368932038835e-3
allele num: 206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.48e-2

DP
type: SiteQuality
SIO_000300: 4.9482e4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.096e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.19e-1

MQ
type: SiteQuality
SIO_000300: 2.491e1

VQSLOD
type: SiteQuality
SIO_000300: -4.262e0

QD
type: SiteQuality
SIO_000300: 2.23e0

GenotypeQuality
all individuals: 34
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.260869565217391e-2
allele num: 92
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.434e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 3.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.007e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 2.1759e4

MQ
type: SiteQuality
SIO_000300: 2.984e1

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.328e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

GenotypeQuality
all individuals: 499
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6102
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
SIO_000300: 2.1004e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.98e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: -4.356e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 2.848e1

QD
type: SiteQuality
SIO_000300: 5.69e0

DP
type: SiteQuality
SIO_000300: 2.2562e4

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.543e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 2.4077e4

QD
type: SiteQuality
SIO_000300: 1.297e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.61e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 2.9e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.142857142857143e-3
allele num: 140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

MQ
type: SiteQuality
SIO_000300: 2.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.8713e4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 6.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.370000000000001e-2

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7022
bin: 7.5e0
variant carriers: 9

South Asian
type: Population
allele count: 1
allele frequency: 7.692307692307693e-3
allele num: 130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.70940170940171e-2
allele num: 234
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.0e-1
allele num: 10
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.6026e4

QD
type: SiteQuality
SIO_000300: 9.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.047e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.809999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.451e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.13e-1

GenotypeQuality
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 634
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6628
bin: 7.5e0
variant carriers: 10

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.620689655172414e-3
allele num: 116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 6.363636363636363e-2
allele num: 220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.920000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

QD
type: SiteQuality
SIO_000300: 1.3e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.255e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 2.6061e4

MQ
type: SiteQuality
SIO_000300: 2.987e1

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.901960784313725e-3
allele num: 204
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.739e0

MQ
type: SiteQuality
SIO_000300: 2.996e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.332e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

DP
type: SiteQuality
SIO_000300: 2.1425e4

QD
type: SiteQuality
SIO_000300: 2.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-2

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 130
bin: 1.25e1
variant carriers: 74

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 14

GenotypeQuality
all individuals: 29
bin: 9.75e1
variant carriers: 29

GenotypeQuality
all individuals: 3
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 10

GenotypeQuality
all individuals: 4
bin: 7.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 39
allele frequency: 2.191011235955056e-1
allele num: 178
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 9
allele frequency: 9.0e-1
allele num: 10
num of homozygotes: 4

Latino
type: Population
allele count: 1
allele frequency: 2.5e-1
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 6.60377358490566e-2
allele num: 106
num of homozygotes: 2

African
type: Population
allele count: 1
allele frequency: 3.333333333333333e-2
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.64e-1

DP
type: SiteQuality
SIO_000300: 1.9551e4

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-1

MQ
type: SiteQuality
SIO_000300: 3.053e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

QD
type: SiteQuality
SIO_000300: 1.797e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.26e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.777e0

QD
type: SiteQuality
SIO_000300: 2.281e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.9e1

DP
type: SiteQuality
SIO_000300: 1.6719e4

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.492537313432836e-2
allele num: 134
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.47e-2

MQ
type: SiteQuality
SIO_000300: 2.9e1

VQSLOD
type: SiteQuality
SIO_000300: -3.144e0

QD
type: SiteQuality
SIO_000300: 3.277e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.4453e4

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
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African
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Latino
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East Asian
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European (Finnish)
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South Asian
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Other
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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DP
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QD
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MQRankSum
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FS
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MQ
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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African
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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FS
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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East Asian
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
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QD
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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VQSLOD
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FS
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ReadPosRankSum
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MQ
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BaseQRankSum
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Other
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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MQ
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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ClippingRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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Other
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Latino
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South Asian
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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South Asian
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Latino
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East Asian
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European (Finnish)
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QD
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ReadPosRankSum
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FS
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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MQ
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