15-44896397-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44896397
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44896396
    reference: chr 15
allele count: 3874
allele frequency: 4.34402332361516e-1
allele num: 8918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+1825delT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+1825delT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+1825delT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.250-3delT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+1825delT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+1825delT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+1825delT
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 445
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.75e1
  variant carriers: 1113
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.25e1
  variant carriers: 867
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 2.25e1
  variant carriers: 893
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 467
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 6.75e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.25e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 134
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.5e0
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 135
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 9.75e1
  variant carriers: 1914
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 127
hgvs: c.250-3delT
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: TA
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS

15-44896397-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44896397
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44896398
    reference: chr 15
allele count: 231
allele frequency: 2.590266875981162e-2
allele num: 8918
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+1825dupT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+1825dupT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.250-3dupT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+1825dupT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+1825dupT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+1825dupT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+1825dupT
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 2.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 6.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.25e1
  variant carriers: 28
hgvs: c.250-3dupT
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS

15-44896397-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44896397
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44896399
    reference: chr 15
allele count: 3
allele frequency: 3.363982955819691e-4
allele num: 8918
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+1824_247+1825dupTT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+1824_3520+1825dupTT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.250-4_250-3dupTT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+1824_3520+1825dupTT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+1824_3520+1825dupTT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+1824_134+1825dupTT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+1824_3520+1825dupTT
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
hgvs: c.250-4_250-3dupTT
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

15-44896397-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44896397
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44896395
    reference: chr 15
allele count: 308
allele frequency: 3.453689167974882e-2
allele num: 8918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+1824_3520+1825delTT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+1824_3520+1825delTT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.250-4_250-3delTT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+1824_3520+1825delTT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+1824_3520+1825delTT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+1824_134+1825delTT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+1824_247+1825delTT
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 2.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.5e0
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.5e0
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 34
hgvs: c.250-4_250-3delTT
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: TAA
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ

15-44896397-TAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44896397
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44896394
    reference: chr 15
allele count: 20
allele frequency: 2.242655303879794e-3
allele num: 8918
alternate allele: T
canonical: false
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 104
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 15
  allele frequency: 2.402306213965407e-3
  allele num: 6244
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 110
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 5
  allele frequency: 2.258355916892502e-3
  allele num: 2214
  num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
reference allele: TAAA
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-44896398-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44896398
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44896398
    reference: chr 15
allele count: 7
allele frequency: 1.029411764705882e-1
allele num: 68
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+1825T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+1825T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+1825T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+1825T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.250-3T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+1825T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+1825T>A
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
hgvs: c.250-3T>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

15-44896414-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44896414
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44896414
    reference: chr 15
allele count: 1
allele frequency: 9.498480243161094e-5
allele num: 10528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+1809G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.250-19G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+1809G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+1809G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+1809G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+1809G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+1809G>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS

15-44896423-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44896423
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44896423
    reference: chr 15
allele count: 2
allele frequency: 1.893580761219466e-4
allele num: 10562
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+1800G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+1800G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+1800G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+1800G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+1800G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.250-28G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+1800G>C
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

15-44898172-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898172
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898172
    reference: chr 15
allele count: 2
allele frequency: 1.658429798666623e-5
allele num: 120596
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+51A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+51A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+51A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.249+51A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+51A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+51A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+51A>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7894
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30846
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6999
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

15-44898172-TGTAGTTAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898172
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898164
    reference: chr 15
allele count: 5
allele frequency: 4.146074496666556e-5
allele num: 120596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13049
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6999
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8272
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: TGTAGTTAA
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

15-44898183-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898183
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898183
    reference: chr 15
allele count: 1
allele frequency: 8.289262089888757e-6
allele num: 120638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.249+40G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+40G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+40G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+40G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+40G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+40G>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+40G>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36452
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6912
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/15-44898183-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898183
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898183
    reference: chr 15
allele count: 1
allele frequency: 8.289262089888757e-6
allele num: 120638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+40G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+40G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+40G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.249+40G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+40G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+40G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+40G>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

15-44898184-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898184
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898184
    reference: chr 15
allele count: 4
allele frequency: 3.314166404295159e-5
allele num: 120694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+39A>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+39A>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+39A>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.249+39A>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+39A>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+39A>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+39A>C
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8250
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-44898185-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898185
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898184
    reference: chr 15
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.249+37delG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+37delG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+37delG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+37delG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+37delG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+37delG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+37delG
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7915
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6890
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: GC
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-44898186-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898186
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898186
    reference: chr 15
allele count: 1
allele frequency: 8.286926544683108e-6
allele num: 120672
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+37G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+37G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+37G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.249+37G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+37G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+37G>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+37G>C
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6917
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

15-44898188-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898188
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898188
    reference: chr 15
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+35T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+35T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+35T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+35T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+35T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+35T>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.249+35T>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8242
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/15-44898190-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898190
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898190
    reference: chr 15
allele count: 2
allele frequency: 1.656479318855704e-5
allele num: 120738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+33T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+33T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+33T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+33T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+33T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+33T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.249+33T>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD

15-44898194-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898194
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898194
    reference: chr 15
allele count: 1
allele frequency: 8.279653579294243e-6
allele num: 120778
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.249+29A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+29A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+29A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+29A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+29A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+29A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+29A>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7901
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

15-44898202-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898202
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898202
    reference: chr 15
allele count: 1
allele frequency: 8.275679433281473e-6
allele num: 120836
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+21C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+21C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+21C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+21C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+21C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.249+21C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+21C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17591
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6991
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/15-44898203-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898203
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898203
    reference: chr 15
allele count: 4
allele frequency: 3.309614429918914e-5
allele num: 120860
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+20T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+20T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.249+20T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+20T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+20T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+20T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+20T>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8241
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 7003
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39662
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

15-44898215-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898215
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898215
    reference: chr 15
allele count: 1
allele frequency: 8.266512358435975e-6
allele num: 120970
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.249+8A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3520+8A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.134+8A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3520+8A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3520+8A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.247+8A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3520+8A>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7036
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
hgvs: c.3520+8A>G
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

15-44898227-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898227
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898227
    reference: chr 15
allele count: 1
allele frequency: 8.26255081468751e-6
allele num: 121028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.243A>G
  hgvsp: ENSP00000453921.1:p.Ile81Met
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3516A>G
  hgvsp: ENSP00000261866.7:p.Ile1172Met
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3516A>G
  hgvsp: ENSP00000396110.2:p.Ile1172Met
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.245A>G
  hgvsp: ENSP00000453490.1:p.Ile82Met
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.130A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3516A>G
  hgvsp: ENSP00000453599.1:p.Ile1172Met
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3516A>G
  hgvsp: ENSP00000445278.2:p.Ile1172Met
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7066
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile1172Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

15-44898229-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898229
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898229
    reference: chr 15
allele count: 3
allele frequency: 2.47843759294141e-5
allele num: 121044
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3514A>G
  hgvsp: ENSP00000261866.7:p.Ile1172Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3514A>G
  hgvsp: ENSP00000453599.1:p.Ile1172Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3514A>G
  hgvsp: ENSP00000396110.2:p.Ile1172Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.243A>G
  hgvsp: ENSP00000453490.1:p.Ile82Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3514A>G
  hgvsp: ENSP00000445278.2:p.Ile1172Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.241A>G
  hgvsp: ENSP00000453921.1:p.Ile81Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.128A>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40484
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile1172Val
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

15-44898235-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898235
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898235
    reference: chr 15
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.237C>T
  hgvsp: ENST00000559754.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3508C>T
  hgvsp: ENST00000261866.7:c.3508C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3508C>T
  hgvsp: ENST00000535302.2:c.3508C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.122C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.235C>T
  hgvsp: ENST00000558988.1:c.235C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3508C>T
  hgvsp: ENST00000427534.2:c.3508C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3508C>T
  hgvsp: ENST00000558319.1:c.3508C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8018
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7068
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu1170Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum

15-44898235-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898235
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898235
    reference: chr 15
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3508C>G
  hgvsp: ENSP00000453599.1:p.Leu1170Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3508C>G
  hgvsp: ENSP00000261866.7:p.Leu1170Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.235C>G
  hgvsp: ENSP00000453921.1:p.Leu79Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3508C>G
  hgvsp: ENSP00000396110.2:p.Leu1170Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.237C>G
  hgvsp: ENSP00000453490.1:p.Leu80Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3508C>G
  hgvsp: ENSP00000445278.2:p.Leu1170Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.122C>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu1170Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

15-44898238-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898238
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898238
    reference: chr 15
allele count: 2
allele frequency: 1.651909607506277e-5
allele num: 121072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.234A>G
  hgvsp: ENSP00000453490.1:p.Thr79Ala
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3505A>G
  hgvsp: ENSP00000396110.2:p.Thr1169Ala
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.232A>G
  hgvsp: ENSP00000453921.1:p.Thr78Ala
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.119A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3505A>G
  hgvsp: ENSP00000261866.7:p.Thr1169Ala
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3505A>G
  hgvsp: ENSP00000445278.2:p.Thr1169Ala
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3505A>G
  hgvsp: ENSP00000453599.1:p.Thr1169Ala
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr1169Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

15-44898241-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898241
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898241
    reference: chr 15
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3502A>G
  hgvsp: ENSP00000453599.1:p.Asn1168Asp
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.231A>G
  hgvsp: ENSP00000453490.1:p.Asn78Asp
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3502A>G
  hgvsp: ENSP00000396110.2:p.Asn1168Asp
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3502A>G
  hgvsp: ENSP00000261866.7:p.Asn1168Asp
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3502A>G
  hgvsp: ENSP00000445278.2:p.Asn1168Asp
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.229A>G
  hgvsp: ENSP00000453921.1:p.Asn77Asp
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.116A>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17752
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40555
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7079
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn1168Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

15-44898241-TAGCAGACTGCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898241
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898230
    reference: chr 15
allele count: 1
allele frequency: 8.259411599517651e-6
allele num: 121074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsp: ENSP00000396110.2:p.Trp1164Ter
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsp: ENSP00000453599.1:p.Trp1164Ter
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsp: ENSP00000445278.2:p.Trp1164Ter
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsp: ENSP00000453921.1:p.Trp73Ter
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsp: ENSP00000453490.1:p.Trp74Ter
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsp: ENSP00000261866.7:p.Trp1164Ter
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8235
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Trp1164Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: TAGCAGACTGCC
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-44898245-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898245
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898245
    reference: chr 15
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3498T>G
  hgvsp: ENST00000535302.2:c.3498T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.227T>G
  hgvsp: ENST00000559754.1:c.227T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.112T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3498T>G
  hgvsp: ENST00000427534.2:c.3498T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.225T>G
  hgvsp: ENST00000558988.1:c.225T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3498T>G
  hgvsp: ENST00000261866.7:c.3498T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3498T>G
  hgvsp: ENST00000558319.1:c.3498T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40584
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser1166Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/15-44898255-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898255
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898255
    reference: chr 15
allele count: 2
allele frequency: 1.652428243303535e-5
allele num: 121034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.102G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3488G>T
  hgvsp: ENSP00000445278.2:p.Gly1163Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3488G>T
  hgvsp: ENSP00000396110.2:p.Gly1163Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.217G>T
  hgvsp: ENSP00000453490.1:p.Gly73Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.215G>T
  hgvsp: ENSP00000453921.1:p.Gly72Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3488G>T
  hgvsp: ENSP00000453599.1:p.Gly1163Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3488G>T
  hgvsp: ENSP00000261866.7:p.Gly1163Val
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7065
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly1163Val
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-44898257-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898257
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898257
    reference: chr 15
allele count: 50
allele frequency: 4.131616784280025e-4
allele num: 121018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3486T>C
  hgvsp: ENST00000535302.2:c.3486T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3486T>C
  hgvsp: ENST00000427534.2:c.3486T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.215T>C
  hgvsp: ENST00000559754.1:c.215T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3486T>C
  hgvsp: ENST00000261866.7:c.3486T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.100T>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3486T>C
  hgvsp: ENST00000558319.1:c.3486T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.213T>C
  hgvsp: ENST00000558988.1:c.213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17484
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23605
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8020
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8264
  bin: 9.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7059
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe1162Phe
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

15-44898271-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898271
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898271
    reference: chr 15
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3472C>T
  hgvsp: ENSP00000396110.2:p.Pro1158Ser
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3472C>T
  hgvsp: ENSP00000261866.7:p.Pro1158Ser
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.86C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.201C>T
  hgvsp: ENSP00000453490.1:p.Pro68Ser
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3472C>T
  hgvsp: ENSP00000453599.1:p.Pro1158Ser
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3472C>T
  hgvsp: ENSP00000445278.2:p.Pro1158Ser
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.199C>T
  hgvsp: ENSP00000453921.1:p.Pro67Ser
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7012
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro1158Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-44898272-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898272
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898272
    reference: chr 15
allele count: 2
allele frequency: 1.656891009709381e-5
allele num: 120708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.200T>C
  hgvsp: ENST00000559754.1:c.200T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.198T>C
  hgvsp: ENST00000558988.1:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3471T>C
  hgvsp: ENST00000558319.1:c.3471T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3471T>C
  hgvsp: ENST00000261866.7:c.3471T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3471T>C
  hgvsp: ENST00000427534.2:c.3471T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3471T>C
  hgvsp: ENST00000535302.2:c.3471T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.85T>C
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7011
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp1157Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

15-44898284-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898284
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898284
    reference: chr 15
allele count: 1
allele frequency: 8.3301401129567e-6
allele num: 120046
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.186A>G
  hgvsp: ENST00000558988.1:c.186A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.73A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3459A>G
  hgvsp: ENST00000261866.7:c.3459A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3459A>G
  hgvsp: ENST00000558319.1:c.3459A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3459A>G
  hgvsp: ENST00000535302.2:c.3459A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3459A>G
  hgvsp: ENST00000427534.2:c.3459A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.188A>G
  hgvsp: ENST00000559754.1:c.188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6864
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu1153Leu
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

15-44898284-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898284
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898284
    reference: chr 15
allele count: 1
allele frequency: 8.3301401129567e-6
allele num: 120046
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3459A>C
  hgvsp: ENSP00000396110.2:p.Leu1153Phe
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3459A>C
  hgvsp: ENSP00000445278.2:p.Leu1153Phe
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.186A>C
  hgvsp: ENSP00000453921.1:p.Leu62Phe
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3459A>C
  hgvsp: ENSP00000261866.7:p.Leu1153Phe
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.188A>C
  hgvsp: ENSP00000453490.1:p.Leu63Phe
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.73A>C
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3459A>C
  hgvsp: ENSP00000453599.1:p.Leu1153Phe
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6864
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu1153Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

15-44898298-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898298
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898298
    reference: chr 15
allele count: 2
allele frequency: 1.689075062495777e-5
allele num: 118408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3454-9C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.181-9C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.59C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3454-9C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3454-9C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.183-9C>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3454-9C>G
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36314
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6236
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4057
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

15-44898300-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898300
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898300
    reference: chr 15
allele count: 1
allele frequency: 8.465823470648991e-6
allele num: 118122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3454-11C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.57C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.183-11C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.181-11C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3454-11C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3454-11C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3454-11C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13049
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6186
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4781
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/15-44898305-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898305
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898305
    reference: chr 15
allele count: 1
allele frequency: 8.543649505322693e-6
allele num: 117046
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.183-16T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3454-16T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3454-16T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.181-16T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.52T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3454-16T>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3454-16T>G
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20556
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31962
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5813
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

15-44898308-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898308
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898309
    reference: chr 15
allele count: 1
allele frequency: 8.603186620324168e-6
allele num: 116236
alternate allele: TA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3454-20dupT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.183-20dupT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3454-20dupT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3454-20dupT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.48dupT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3454-20dupT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.181-20dupT
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4887
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9234
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

15-44898316-ATTAGAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898316
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898309
    reference: chr 15
allele count: 1
allele frequency: 8.676789587852495e-6
allele num: 115250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3454-34_3454-28delCTTCTAA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3454-34_3454-28delCTTCTAA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3454-34_3454-28delCTTCTAA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3454-34_3454-28delCTTCTAA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.181-34_181-28delCTTCTAA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.183-34_183-28delCTTCTAA
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.34_40delCTTCTAA
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8185
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23808
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
reference allele: ATTAGAAG
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

15-44898318-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898318
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898318
    reference: chr 15
allele count: 2
allele frequency: 1.74076524039968e-5
allele num: 114892
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.39A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3454-29A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3454-29A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3454-29A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.183-29A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.181-29A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3454-29A>G
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3445
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

15-44898318-TAGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898318
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898315
    reference: chr 15
allele count: 1
allele frequency: 8.703826201998399e-6
allele num: 114892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.36_38delTCT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3454-32_3454-30delTCT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3454-32_3454-30delTCT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.181-32_181-30delTCT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3454-32_3454-30delTCT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3454-32_3454-30delTCT
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.183-32_183-30delTCT
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6927
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21572
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3445
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4093
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12887
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: TAGA
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/15-44898326-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898326
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898326
    reference: chr 15
allele count: 1
allele frequency: 8.917106577257812e-6
allele num: 112144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.31G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3454-37G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3454-37G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.181-37G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3454-37G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3454-37G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.183-37G>T
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5001
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14548
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4346
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7083
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

15-44898327-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898327
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898325
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 111522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3454-40_3454-39delAG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3454-40_3454-39delAG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3454-40_3454-39delAG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.28_29delAG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.183-40_183-39delAG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.181-40_181-39delAG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3454-40_3454-39delAG
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8177
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7711
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: ACT
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/15-44898328-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898328
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898328
    reference: chr 15
allele count: 1
allele frequency: 8.998956121089954e-6
allele num: 111124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3454-39G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.29G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.181-39G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3454-39G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3454-39G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.183-39G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3454-39G>T
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8176
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

15-44898329-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898329
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898329
    reference: chr 15
allele count: 2
allele frequency: 1.80394703611502e-5
allele num: 110868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.181-40A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3454-40A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3454-40A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3454-40A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.28A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3454-40A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.183-40A>G
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14224
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7901
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

15-44898332-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44898332
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44898332
    reference: chr 15
allele count: 1
allele frequency: 9.186448151686632e-6
allele num: 108856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3454-43A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104133
  ensembl transcript: ENST00000558093
  gene symbol: SPG11
  hgvsc: ENST00000558093.1:n.25A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3454-43A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.183-43A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.181-43A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3454-43A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3454-43A>G
  variant of: http://identifiers.org/hgnc/11226
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8175
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP

15-44900591-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900591
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900591
    reference: chr 15
allele count: 3
allele frequency: 2.492481015602931e-5
allele num: 120362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.180+51A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3453+51A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3453+51A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.182+51A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3453+51A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3453+51A>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5974
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15500
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22222
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6771
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1323
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genotype quality: GenotypeQuality
  all individuals: 33
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genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-44900593-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900593
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900593
    reference: chr 15
allele count: 1
allele frequency: 8.314763694415805e-6
allele num: 120268
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3453+49G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3453+49G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3453+49G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3453+49G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.180+49G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.182+49G>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15905
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 822
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2409
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genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 31648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

15-44900597-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900597
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900597
    reference: chr 15
allele count: 10
allele frequency: 8.312137383006667e-5
allele num: 120306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3453+45C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.182+45C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3453+45C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.180+45C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3453+45C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3453+45C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7476
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22438
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34374
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6658
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD

15-44900600-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900600
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900600
    reference: chr 15
allele count: 1
allele frequency: 8.307855908547122e-6
allele num: 120368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3453+42C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.182+42C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.180+42C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3453+42C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3453+42C>A
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3453+42C>A
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4422
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6689
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

15-44900609-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900609
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900609
    reference: chr 15
allele count: 6
allele frequency: 4.977105315548477e-5
allele num: 120552
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.180+33A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.182+33A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3453+33A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3453+33A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3453+33A>G
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3453+33A>G
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23324
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4431
  bin: 9.75e1
  variant carriers: 6
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/15-44900620-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900620
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900621
    reference: chr 15
allele count: 8
allele frequency: 6.622955162593549e-5
allele num: 120792
alternate allele: AC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3453+21_3453+22insG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3453+21_3453+22insG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3453+21_3453+22insG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.182+21_182+22insG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3453+21_3453+22insG
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.180+21_180+22insG
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21334
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7622
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40862
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4443
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-44900621-T-TGGCCACCTAAATAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900621
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900635
    reference: chr 15
allele count: 8
allele frequency: 6.621310688450779e-5
allele num: 120822
alternate allele: TGGCCACCTAAATAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21386
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7627
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6873
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4443
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/15-44900625-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900625
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900625
    reference: chr 15
allele count: 1
allele frequency: 8.271024945411235e-6
allele num: 120904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3453+17G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3453+17G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3453+17G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3453+17G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.180+17G>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.182+17G>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41029
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6863
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4440
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

15-44900638-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900638
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900638
    reference: chr 15
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3453+4C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.180+4C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3453+4C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.182+4C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3453+4C>T
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3453+4C>T
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4443
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: c.3453+4C>T
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

15-44900645-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900645
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900645
    reference: chr 15
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.177T>A
  hgvsp: ENST00000558988.1:c.177T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3450T>A
  hgvsp: ENST00000261866.7:c.3450T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3450T>A
  hgvsp: ENST00000558319.1:c.3450T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.179T>A
  hgvsp: ENST00000559754.1:c.179T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3450T>A
  hgvsp: ENST00000535302.2:c.3450T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3450T>A
  hgvsp: ENST00000427534.2:c.3450T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42003
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile1150Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

15-44900650-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900650
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900650
    reference: chr 15
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.172C>A
  hgvsp: ENSP00000453921.1:p.Leu58Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3445C>A
  hgvsp: ENSP00000396110.2:p.Leu1149Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3445C>A
  hgvsp: ENSP00000453599.1:p.Leu1149Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3445C>A
  hgvsp: ENSP00000445278.2:p.Leu1149Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.174C>A
  hgvsp: ENSP00000453490.1:p.Leu59Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3445C>A
  hgvsp: ENSP00000261866.7:p.Leu1149Ile
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21640
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6978
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu1149Ile
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

15-44900659-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900659
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900659
    reference: chr 15
allele count: 51
allele frequency: 4.202442360618995e-4
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3436A>G
  hgvsp: ENSP00000445278.2:p.Ile1146Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.165A>G
  hgvsp: ENSP00000453490.1:p.Ile56Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3436A>G
  hgvsp: ENSP00000396110.2:p.Ile1146Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3436A>G
  hgvsp: ENSP00000261866.7:p.Ile1146Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3436A>G
  hgvsp: ENSP00000453599.1:p.Ile1146Val
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.163A>G
  hgvsp: ENSP00000453921.1:p.Ile55Val
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4482
  bin: 9.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42068
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile1146Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-44900662-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900662
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900662
    reference: chr 15
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.162A>G
  hgvsp: ENSP00000453490.1:p.Thr55Ala
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.160A>G
  hgvsp: ENSP00000453921.1:p.Thr54Ala
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3433A>G
  hgvsp: ENSP00000396110.2:p.Thr1145Ala
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3433A>G
  hgvsp: ENSP00000445278.2:p.Thr1145Ala
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3433A>G
  hgvsp: ENSP00000261866.7:p.Thr1145Ala
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3433A>G
  hgvsp: ENSP00000453599.1:p.Thr1145Ala
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4439
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr1145Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

15-44900670-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900670
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900670
    reference: chr 15
allele count: 13
allele frequency: 1.071157839227448e-4
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.154C>G
  hgvsp: ENSP00000453490.1:p.Ser52Cys
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3425C>G
  hgvsp: ENSP00000453599.1:p.Ser1142Cys
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3425C>G
  hgvsp: ENSP00000445278.2:p.Ser1142Cys
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.152C>G
  hgvsp: ENSP00000453921.1:p.Ser51Cys
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3425C>G
  hgvsp: ENSP00000396110.2:p.Ser1142Cys
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3425C>G
  hgvsp: ENSP00000261866.7:p.Ser1142Cys
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42094
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser1142Cys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-44900672-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900672
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900672
    reference: chr 15
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.150A>G
  hgvsp: ENST00000558988.1:c.150A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3423A>G
  hgvsp: ENST00000427534.2:c.3423A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3423A>G
  hgvsp: ENST00000535302.2:c.3423A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3423A>G
  hgvsp: ENST00000558319.1:c.3423A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.152A>G
  hgvsp: ENST00000559754.1:c.152A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3423A>G
  hgvsp: ENST00000261866.7:c.3423A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42105
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6977
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro1141Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

15-44900675-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900675
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900675
    reference: chr 15
allele count: 4500
allele frequency: 3.707670758836615e-2
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.149G>A
  hgvsp: ENST00000559754.1:c.149G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3420G>A
  hgvsp: ENST00000535302.2:c.3420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.147G>A
  hgvsp: ENST00000558988.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  clinical significance: benign&likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3420G>A
  hgvsp: ENST00000261866.7:c.3420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3420G>A
  hgvsp: ENST00000427534.2:c.3420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  clinical significance: benign&likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3420G>A
  hgvsp: ENST00000558319.1:c.3420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23687
  bin: 2.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.75e1
  variant carriers: 307
genotype depth: GenotypeDepth
  all individuals: 20308
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.25e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.25e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.75e1
  variant carriers: 337
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.25e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 9.75e1
  variant carriers: 1146
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.75e1
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 3.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 3.75e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 6.25e1
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.75e1
  variant carriers: 273
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 8.25e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 263
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6512
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Leu1140Leu
num of homozygotes: 123
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

15-44900680-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900680
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900680
    reference: chr 15
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.142G>A
  hgvsp: ENSP00000453921.1:p.Val48Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3415G>A
  hgvsp: ENSP00000261866.7:p.Val1139Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3415G>A
  hgvsp: ENSP00000445278.2:p.Val1139Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.144G>A
  hgvsp: ENSP00000453490.1:p.Val49Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3415G>A
  hgvsp: ENSP00000453599.1:p.Val1139Ile
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3415G>A
  hgvsp: ENSP00000396110.2:p.Val1139Ile
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val1139Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

15-44900683-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900683
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900683
    reference: chr 15
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3412A>G
  hgvsp: ENSP00000396110.2:p.Ser1138Gly
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3412A>G
  hgvsp: ENSP00000453599.1:p.Ser1138Gly
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.139A>G
  hgvsp: ENSP00000453921.1:p.Ser47Gly
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3412A>G
  hgvsp: ENSP00000445278.2:p.Ser1138Gly
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3412A>G
  hgvsp: ENSP00000261866.7:p.Ser1138Gly
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.141A>G
  hgvsp: ENSP00000453490.1:p.Ser48Gly
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7739
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43973
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser1138Gly
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum

15-44900689-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900689
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900689
    reference: chr 15
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3406C>A
  hgvsp: ENSP00000445278.2:p.Pro1136Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3406C>A
  hgvsp: ENSP00000453599.1:p.Pro1136Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3406C>A
  hgvsp: ENSP00000396110.2:p.Pro1136Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3406C>A
  hgvsp: ENSP00000261866.7:p.Pro1136Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.135C>A
  hgvsp: ENSP00000453490.1:p.Pro46Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.133C>A
  hgvsp: ENSP00000453921.1:p.Pro45Thr
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7738
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7085
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro1136Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

15-44900729-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900729
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900729
    reference: chr 15
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3366T>C
  hgvsp: ENST00000261866.7:c.3366T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.95T>C
  hgvsp: ENST00000559754.1:c.95T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3366T>C
  hgvsp: ENST00000535302.2:c.3366T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3366T>C
  hgvsp: ENST00000427534.2:c.3366T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3366T>C
  hgvsp: ENST00000558319.1:c.3366T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.93T>C
  hgvsp: ENST00000558988.1:c.93T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43873
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro1122Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

15-44900733-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900733
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900733
    reference: chr 15
allele count: 5
allele frequency: 4.122963256151461e-5
allele num: 121272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3362C>G
  hgvsp: ENSP00000453599.1:p.Thr1121Ser
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3362C>G
  hgvsp: ENSP00000261866.7:p.Thr1121Ser
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.89C>G
  hgvsp: ENSP00000453921.1:p.Thr30Ser
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3362C>G
  hgvsp: ENSP00000445278.2:p.Thr1121Ser
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3362C>G
  hgvsp: ENSP00000396110.2:p.Thr1121Ser
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.91C>G
  hgvsp: ENSP00000453490.1:p.Thr31Ser
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43844
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3419
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Thr1121Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-44900742-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900742
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900742
    reference: chr 15
allele count: 1
allele frequency: 8.253276550790664e-6
allele num: 121164
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.80T>C
  hgvsp: ENSP00000453921.1:p.Met27Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3353T>C
  hgvsp: ENSP00000396110.2:p.Met1118Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3353T>C
  hgvsp: ENSP00000261866.7:p.Met1118Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3353T>C
  hgvsp: ENSP00000445278.2:p.Met1118Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3353T>C
  hgvsp: ENSP00000453599.1:p.Met1118Thr
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.82T>C
  hgvsp: ENSP00000453490.1:p.Met28Thr
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met1118Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

15-44900749-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900749
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900749
    reference: chr 15
allele count: 2
allele frequency: 1.65264671371201e-5
allele num: 121018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3346T>C
  hgvsp: ENST00000535302.2:c.3346T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3346T>C
  hgvsp: ENST00000558319.1:c.3346T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.75T>C
  hgvsp: ENST00000559754.1:c.75T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3346T>C
  hgvsp: ENST00000261866.7:c.3346T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3346T>C
  hgvsp: ENST00000427534.2:c.3346T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.73T>C
  hgvsp: ENST00000558988.1:c.73T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu1116Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

15-44900752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900752
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900752
    reference: chr 15
allele count: 7
allele frequency: 5.785315217031968e-5
allele num: 120996
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3343C>T
  hgvsp: ENST00000261866.7:c.3343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3343C>T
  hgvsp: ENST00000535302.2:c.3343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.70C>T
  hgvsp: ENST00000558988.1:c.70C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3343C>T
  hgvsp: ENST00000558319.1:c.3343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.72C>T
  hgvsp: ENST00000559754.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3343C>T
  hgvsp: ENST00000427534.2:c.3343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25950
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3410
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6953
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu1115Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

15-44900764-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44900764
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44900763
    reference: chr 15
allele count: 1
allele frequency: 8.300408380092301e-6
allele num: 120476
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453921
  ensembl transcript: ENST00000558988
  gene symbol: SPG11
  hgvsc: ENST00000558988.1:c.57delA
  hgvsp: ENSP00000453921.1:p.Val20TrpfsTer6
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000445278
  ensembl transcript: ENST00000535302
  gene symbol: SPG11
  hgvsc: ENST00000535302.2:c.3330delA
  hgvsp: ENSP00000445278.2:p.Val1111TrpfsTer6
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000396110
  ensembl transcript: ENST00000427534
  gene symbol: SPG11
  hgvsc: ENST00000427534.2:c.3330delA
  hgvsp: ENSP00000396110.2:p.Val1111TrpfsTer6
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453490
  ensembl transcript: ENST00000559754
  gene symbol: SPG11
  hgvsc: ENST00000559754.1:c.59delA
  hgvsp: ENSP00000453490.1:p.Val21TrpfsTer6
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000453599
  ensembl transcript: ENST00000558319
  gene symbol: SPG11
  hgvsc: ENST00000558319.1:c.3330delA
  hgvsp: ENSP00000453599.1:p.Val1111TrpfsTer6
  variant of: http://identifiers.org/hgnc/11226
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000104133
  ensembl protein: ENSP00000261866
  ensembl transcript: ENST00000261866
  gene symbol: SPG11
  hgvsc: ENST00000261866.7:c.3330delA
  hgvsp: ENSP00000261866.7:p.Val1111TrpfsTer6
  variant of: http://identifiers.org/hgnc/11226
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7629
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25867
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3392
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6821
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val1111TrpfsTer6
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: CT
site quality: MQ
site quality: ReadPosRankSum

GenotypeQuality
all individuals: 178
bin: 7.75e1
variant carriers: 158

GenotypeQuality
all individuals: 144
bin: 1.75e1
variant carriers: 87

GenotypeQuality
all individuals: 186
bin: 6.25e1
variant carriers: 154

GenotypeQuality
all individuals: 586
bin: 7.5e0
variant carriers: 58

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 128

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 124

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 129

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 125

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 125

GenotypeQuality
all individuals: 175
bin: 9.25e1
variant carriers: 157

East Asian
type: Population
allele count: 49
allele frequency: 4.454545454545454e-1
allele num: 110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 993
allele frequency: 4.485094850948509e-1
allele num: 2214
num of homozygotes: 0

South Asian
type: Population
allele count: 2681
allele frequency: 4.293721973094171e-1
allele num: 6244
num of homozygotes: 0

Other
type: Population
allele count: 48
allele frequency: 4.615384615384616e-1
allele num: 104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 33
allele frequency: 4.342105263157895e-1
allele num: 76
num of homozygotes: 0

African
type: Population
allele count: 70
allele frequency: 4.117647058823529e-1
allele num: 170
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

DP
type: SiteQuality
SIO_000300: 1.50062e5

ClippingRankSum
type: SiteQuality
SIO_000300: -8.71e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

QD
type: SiteQuality
SIO_000300: 2.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.846e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 175
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 11

GenotypeQuality
all individuals: 586
bin: 7.5e0
variant carriers: 26

GenotypeQuality
all individuals: 187
bin: 3.75e1
variant carriers: 19

GenotypeQuality
all individuals: 1984
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 166
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 167
bin: 4.25e1
variant carriers: 18

GenotypeQuality
all individuals: 178
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 12

GenotypeQuality
all individuals: 148
bin: 2.75e1
variant carriers: 23

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 1.806684733514002e-2
allele num: 2214
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 3.636363636363636e-2
allele num: 110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 2.884615384615385e-2
allele num: 104
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.31578947368421e-2
allele num: 76
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 5.294117647058823e-2
allele num: 170
num of homozygotes: 0

South Asian
type: Population
allele count: 174
allele frequency: 2.786675208199872e-2
allele num: 6244
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.846e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

DP
type: SiteQuality
SIO_000300: 1.50062e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

QD
type: SiteQuality
SIO_000300: 2.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 166
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 144
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 187
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: NaN
allele num: 0
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Latino
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South Asian
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Other
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African
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European (Non-Finnish)
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allele num: 2214
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East Asian
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InbreedingCoeff
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QD
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ClippingRankSum
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DP
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 2.941176470588235e-2
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Latino
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allele frequency: 5.263157894736842e-2
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European (Finnish)
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Other
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allele frequency: 9.615384615384616e-3
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European (Non-Finnish)
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allele frequency: 2.935862691960253e-2
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South Asian
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East Asian
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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DP
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FS
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MQ
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African
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European (Finnish)
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Latino
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MQRankSum
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DP
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VQSLOD
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QD
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MQ
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ReadPosRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 4.761904761904762e-2
allele num: 42
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Latino
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East Asian
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allele frequency: NaN
allele num: 0
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European (Finnish)
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allele frequency: NaN
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African
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allele frequency: 5.0e-1
allele num: 10
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Other
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allele frequency: NaN
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VQSLOD
type: SiteQuality
SIO_000300: 5.67e0

ReadPosRankSum
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SIO_000300: 1.63e0

MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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FS
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DP
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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African
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South Asian
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allele num: 7382
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
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MQRankSum
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SIO_000300: -2.94e-1

MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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DP
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ClippingRankSum
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Other
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Latino
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South Asian
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allele num: 7402
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East Asian
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2632
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European (Finnish)
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allele frequency: NaN
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MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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Other
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VQSLOD
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QD
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Other
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East Asian
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ClippingRankSum
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QD
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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FS
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BaseQRankSum
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QD
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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QD
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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MQ
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ReadPosRankSum
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DP
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 4.517800132522137e-5
allele num: 66404
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.321e1

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

FS
type: SiteQuality
SIO_000300: 8.36e-1

DP
type: SiteQuality
SIO_000300: 1.959858e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.855e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.48e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.730574471800244e-5
allele num: 11454
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 7.092e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

DP
type: SiteQuality
SIO_000300: 1.962556e6

QD
type: SiteQuality
SIO_000300: 1.383e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.52e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505978735580254e-5
allele num: 66402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0331e1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.964216e6

MQ
type: SiteQuality
SIO_000300: 5.882e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.682e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

VQSLOD
type: SiteQuality
SIO_000300: -1.065e0

QD
type: SiteQuality
SIO_000300: 1.544e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.926e1

FS
type: SiteQuality
SIO_000300: 9.393000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.778e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

QD
type: SiteQuality
SIO_000300: 1.229e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

DP
type: SiteQuality
SIO_000300: 1.967061e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.929012345679012e-4
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

DP
type: SiteQuality
SIO_000300: 1.969288e6

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.725e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 1.454e0

QD
type: SiteQuality
SIO_000300: 1.268e1

GenotypeQuality
all individuals: 280
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.29e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.93e-1

MQ
type: SiteQuality
SIO_000300: 5.834e1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.974796e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

FS
type: SiteQuality
SIO_000300: 1.803e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.669e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 3.497e0

DP
type: SiteQuality
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ClippingRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.843e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.231e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66496
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
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African
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allele count: 4
allele frequency: 3.858024691358024e-4
allele num: 10368
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 6.876e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502765087761481e-5
allele num: 66544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8600
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501997656883655e-5
allele num: 66578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
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num of homozygotes: 0

Other
type: Population
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allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
SIO_000300: 1.993353e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 758
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.505316273202379e-5
allele num: 66588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.993895e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.32e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 1.313e1

VQSLOD
type: SiteQuality
SIO_000300: -1.291e0

GenotypeQuality
all individuals: 1412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.541e0

VQSLOD
type: SiteQuality
SIO_000300: 2.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

FS
type: SiteQuality
SIO_000300: 5.465e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.006e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.99473e6

QD
type: SiteQuality
SIO_000300: 1.402e1

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.02e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.006e0

DP
type: SiteQuality
SIO_000300: 1.99473e6

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

QD
type: SiteQuality
SIO_000300: 1.402e1

MQ
type: SiteQuality
SIO_000300: 5.946e1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 5.465e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.541e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736111111111111e-4
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 7.001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: -3.186e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 1.404e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.09e-1

DP
type: SiteQuality
SIO_000300: 1.994751e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.145e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.942e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

MQ
type: SiteQuality
SIO_000300: 5.874e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 1.995006e6

QD
type: SiteQuality
SIO_000300: 6.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7079
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076072426783327e-5
allele num: 16458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

FS
type: SiteQuality
SIO_000300: 1.942e0

MQ
type: SiteQuality
SIO_000300: 5.874e1

DP
type: SiteQuality
SIO_000300: 1.995006e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

QD
type: SiteQuality
SIO_000300: 6.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.13e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.159e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.786e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
SIO_000300: -3.555e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.28e-1

DP
type: SiteQuality
SIO_000300: 1.995117e6

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00507858280494e-5
allele num: 66554
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 906
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South Asian
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allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 4.65e-1

QD
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.995435e6

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
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allele num: 906
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 2
allele frequency: 1.737619461337967e-4
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 48
allele frequency: 7.213055630691552e-4
allele num: 66546
num of homozygotes: 0

InbreedingCoeff
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MQRankSum
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 1.127e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.996376e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66374
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.1020258725897e-5
allele num: 16388
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
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DP
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.426e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.061e0

FS
type: SiteQuality
SIO_000300: 3.129e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013954609843576e-5
allele num: 66358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.066e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.255e1

DP
type: SiteQuality
SIO_000300: 1.990361e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.145526057030482e-5
allele num: 16272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.057e0

QD
type: SiteQuality
SIO_000300: 1.079e1

DP
type: SiteQuality
SIO_000300: 1.978391e6

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.8e-1

FS
type: SiteQuality
SIO_000300: 6.89e0

VQSLOD
type: SiteQuality
SIO_000300: -1.01e-2

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.62e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.145526057030482e-5
allele num: 16272
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.89e0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.62e0

DP
type: SiteQuality
SIO_000300: 1.978391e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.057e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: -1.01e-2

QD
type: SiteQuality
SIO_000300: 1.079e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.080335140463283e-5
allele num: 64928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.931971e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.482e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e-1

QD
type: SiteQuality
SIO_000300: 1.123e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.17e-1

GenotypeQuality
all individuals: 1097
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543924656476764e-5
allele num: 64770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

QD
type: SiteQuality
SIO_000300: 1.424e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.917892e6

GenotypeQuality
all individuals: 1056
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559575795383656e-5
allele num: 64120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.277e1

VQSLOD
type: SiteQuality
SIO_000300: -9.424e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.759e0

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.866793e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.570795765134617e-5
allele num: 63662
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.121e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

DP
type: SiteQuality
SIO_000300: 1.817838e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584836286411614e-5
allele num: 63098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11054
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.736029e6

MQ
type: SiteQuality
SIO_000300: 5.119e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.466e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.312e0

VQSLOD
type: SiteQuality
SIO_000300: -4.221e-1

QD
type: SiteQuality
SIO_000300: 3.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.62e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.179953572677839e-5
allele num: 62894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

FS
type: SiteQuality
SIO_000300: 6.322e0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.5e1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.707043e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8188
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variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.413545407901488e-5
allele num: 15592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62894
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

FS
type: SiteQuality
SIO_000300: 6.322e0

MQRankSum
type: SiteQuality
SIO_000300: -4.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.08e-1

MQ
type: SiteQuality
SIO_000300: 5.5e1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-2

DP
type: SiteQuality
SIO_000300: 1.707043e6

QD
type: SiteQuality
SIO_000300: 9.17e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10762
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.631960310725243e-5
allele num: 61276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.014e0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.569377e6

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.065e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.693e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 2.8e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60918
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 0.0e0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.54104e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 3.019e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 7800
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10670
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.647066574430938e-5
allele num: 60714
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -7.875e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.461e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.539823e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Non-Finnish)
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allele count: 2
allele frequency: 3.301528607745386e-5
allele num: 60578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-2

QD
type: SiteQuality
SIO_000300: 9.83e0

MQ
type: SiteQuality
SIO_000300: 5.894e1

FS
type: SiteQuality
SIO_000300: 1.3393e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.907e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

DP
type: SiteQuality
SIO_000300: 1.527547e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.489e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10526
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.684125433662299e-5
allele num: 59378
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7532
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14934
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9328
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.17e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

VQSLOD
type: SiteQuality
SIO_000300: 4.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

FS
type: SiteQuality
SIO_000300: 6.576e0

DP
type: SiteQuality
SIO_000300: 1.497781e6

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 1.826817683595177e-4
allele num: 16422
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8566
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66180
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.529e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e-1

DP
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66114
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.699321047526673e-5
allele num: 10310
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6466
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East Asian
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allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
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MQRankSum
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DP
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QD
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66140
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South Asian
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allele num: 16402
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East Asian
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Other
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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InbreedingCoeff
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MQ
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 9.688044952528579e-5
allele num: 10322
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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East Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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QD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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MQ
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 1.695487e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11526
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018047926601074e-5
allele num: 66268
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.433386056697895e-4
allele num: 16438
num of homozygotes: 0

BaseQRankSum
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SIO_000300: 3.36e0

DP
type: SiteQuality
SIO_000300: 1.713981e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.82e-1

QD
type: SiteQuality
SIO_000300: 1.395e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

FS
type: SiteQuality
SIO_000300: 1.2402e1

VQSLOD
type: SiteQuality
SIO_000300: -1.443e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 199
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6861
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.204782988464203e-4
allele num: 66402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.486e0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 1.484e1

FS
type: SiteQuality
SIO_000300: 7.384e0

MQ
type: SiteQuality
SIO_000300: 5.395e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

DP
type: SiteQuality
SIO_000300: 1.730751e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

GenotypeQuality
all individuals: 1959
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.204601578028067e-4
allele num: 66412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.413e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

DP
type: SiteQuality
SIO_000300: 1.731579e6

QD
type: SiteQuality
SIO_000300: 4.09e0

MQRankSum
type: SiteQuality
SIO_000300: -2.076e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 4.864e0

VQSLOD
type: SiteQuality
SIO_000300: 8.139999999999999e-1

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.71e-1

FS
type: SiteQuality
SIO_000300: 1.3178e1

MQ
type: SiteQuality
SIO_000300: 5.781e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.916e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.395e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e0

DP
type: SiteQuality
SIO_000300: 1.737409e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.86e-1

QD
type: SiteQuality
SIO_000300: 6.92e0

GenotypeQuality
all individuals: 578
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6939
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.511e0

MQ
type: SiteQuality
SIO_000300: 5.616e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.93e-1

DP
type: SiteQuality
SIO_000300: 1.744837e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.16e0

MQRankSum
type: SiteQuality
SIO_000300: -8.39e-1

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

GenotypeQuality
all individuals: 1457
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4443
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6969
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.744e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.791e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 4.29e0

VQSLOD
type: SiteQuality
SIO_000300: -2.342e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.747147e6

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42039
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4444
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.498e1

MQRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.867e0

VQSLOD
type: SiteQuality
SIO_000300: 6.15e-1

DP
type: SiteQuality
SIO_000300: 1.748156e6

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6975
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.320027648176948e-4
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 44
allele frequency: 4.229142637447136e-3
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.389e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

DP
type: SiteQuality
SIO_000300: 1.751602e6

VQSLOD
type: SiteQuality
SIO_000300: 5.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.18e-1

GenotypeQuality
all individuals: 1459
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42080
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6984
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.8e-2

FS
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 1.749057e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.448e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4446
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 6980
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.798453330136083e-4
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.74982e6

FS
type: SiteQuality
SIO_000300: 1.126e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.97e0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.8e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

QD
type: SiteQuality
SIO_000300: 1.21e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4437
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 1.749313e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.266e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeQuality
all individuals: 40928
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 564
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 402
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1084
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 7533
bin: 9.75e1
variant carriers: 4359

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 77
allele frequency: 4.663275193798449e-3
allele num: 16512
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 232
allele frequency: 3.507710916238282e-2
allele num: 6614
num of homozygotes: 3

Latino
type: Population
allele count: 241
allele frequency: 2.081893572909468e-2
allele num: 11576
num of homozygotes: 4

African
type: Population
allele count: 85
allele frequency: 8.169934640522876e-3
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 22
allele frequency: 2.422907488986784e-2
allele num: 908
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 3843
allele frequency: 5.759546789760805e-2
allele num: 66724
num of homozygotes: 112

FS
type: SiteQuality
SIO_000300: 1.121e0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.47e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.007e0

DP
type: SiteQuality
SIO_000300: 1.972297e6

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3430
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43986
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7092
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: -8.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.61e-1

FS
type: SiteQuality
SIO_000300: 9.994e0

VQSLOD
type: SiteQuality
SIO_000300: -1.376e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

DP
type: SiteQuality
SIO_000300: 1.729543e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 9.18e0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7086
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.79e-1

QD
type: SiteQuality
SIO_000300: 2.078e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.415e0

DP
type: SiteQuality
SIO_000300: 1.729528e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3433
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1863
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.66e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.038e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 1.729482e6

FS
type: SiteQuality
SIO_000300: 5.287e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.224e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.243e0

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7054
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3421
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1164
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.127e1

DP
type: SiteQuality
SIO_000300: 1.728464e6

VQSLOD
type: SiteQuality
SIO_000300: -1.118e0

FS
type: SiteQuality
SIO_000300: 1.0902e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.826e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 7038
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.030670384289005e-4
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

DP
type: SiteQuality
SIO_000300: 1.728557e6

QD
type: SiteQuality
SIO_000300: 1.285e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

FS
type: SiteQuality
SIO_000300: 4.123e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 1152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3410
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2025
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7013
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43686
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

DP
type: SiteQuality
SIO_000300: 1.726081e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.31e1

GenotypeQuality
all individuals: 354
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3409
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007790176557283e-5
allele num: 66494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.723726e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.934e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.488e1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 4.345e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43419
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.253250698748329e-4
allele num: 16458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.803e0

MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.610000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.054e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.723623e6

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42844
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511441613010489e-5
allele num: 66162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.807e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1