15-91453840-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453840
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453840
    reference: chr 15
allele count: 171
allele frequency: 1.415469174226872e-3
allele num: 120808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1687T>C
  hgvsp: ENST00000559717.1:c.1687T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2049T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1687T>C
  hgvsp: ENST00000360468.3:c.1687T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.211T>C
  hgvsp: ENST00000431652.2:c.211T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.616T>C
  hgvsp: ENST00000557865.1:c.616T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.248T>C
  hgvsp: ENST00000558171.1:c.248T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.396T>C
  hgvsp: ENST00000560616.1:c.396T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1687T>C
  hgvsp: ENST00000558161.1:c.1687T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1687T>C
  hgvsp: ENST00000560451.1:c.1687T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.1T>C
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 13352
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 19846
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 10067
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu563Leu
num of homozygotes: 1
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

15-91453859-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453859
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453859
    reference: chr 15
allele count: 1
allele frequency: 8.271845945141119e-6
allele num: 120892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.230A>G
  hgvsp: ENSP00000388221.2:p.His77Arg
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.267A>G
  hgvsp: ENSP00000452928.1:p.His90Arg
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1706A>G
  hgvsp: ENSP00000452631.1:p.His569Arg
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1706A>G
  hgvsp: ENSP00000353655.3:p.His569Arg
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2068A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.10A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.415A>G
  hgvsp: ENSP00000452866.1:p.His139Arg
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.635A>G
  hgvsp: ENSP00000453140.1:p.His212Arg
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1706A>G
  hgvsp: ENSP00000452948.1:p.His569Arg
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.20A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1706A>G
  hgvsp: ENSP00000453999.1:p.His569Arg
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His569Arg
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-91453860-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453860
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453860
    reference: chr 15
allele count: 1305
allele frequency: 1.079440179989412e-2
allele num: 120896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1707C>T
  hgvsp: ENST00000560451.1:c.1707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.11C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.636C>T
  hgvsp: ENST00000557865.1:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.416C>T
  hgvsp: ENST00000560616.1:c.416C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.231C>T
  hgvsp: ENST00000431652.2:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1707C>T
  hgvsp: ENST00000360468.3:c.1707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1707C>T
  hgvsp: ENST00000558161.1:c.1707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1707C>T
  hgvsp: ENST00000559717.1:c.1707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.21C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2069C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.268C>T
  hgvsp: ENST00000558171.1:c.268C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10089
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 4.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 9.75e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 3.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 4.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 19836
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 13268
  bin: 3.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 5.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.25e1
  variant carriers: 116
genotype quality: GenotypeQuality
hgvs: p.His569His
num of homozygotes: 8
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

15-91453867-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453867
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453867
    reference: chr 15
allele count: 1
allele frequency: 8.270067318347971e-6
allele num: 120918
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.423A>G
  hgvsp: ENSP00000452866.1:p.Ile142Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.643A>G
  hgvsp: ENSP00000453140.1:p.Ile215Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.275A>G
  hgvsp: ENSP00000452928.1:p.Ile93Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1714A>G
  hgvsp: ENSP00000452948.1:p.Ile572Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1714A>G
  hgvsp: ENSP00000353655.3:p.Ile572Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.28A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.238A>G
  hgvsp: ENSP00000388221.2:p.Ile80Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.18A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2076A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1714A>G
  hgvsp: ENSP00000452631.1:p.Ile572Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1714A>G
  hgvsp: ENSP00000453999.1:p.Ile572Val
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile572Val
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

15-91453877-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453877
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453877
    reference: chr 15
allele count: 1
allele frequency: 8.269383434771103e-6
allele num: 120928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.38C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2086C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.653C>T
  hgvsp: ENSP00000453140.1:p.Thr218Met
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1724C>T
  hgvsp: ENSP00000452631.1:p.Thr575Met
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1724C>T
  hgvsp: ENSP00000353655.3:p.Thr575Met
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1724C>T
  hgvsp: ENSP00000453999.1:p.Thr575Met
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.248C>T
  hgvsp: ENSP00000388221.2:p.Thr83Met
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.433C>T
  hgvsp: ENSP00000452866.1:p.Thr145Met
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.285C>T
  hgvsp: ENSP00000452928.1:p.Thr96Met
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1724C>T
  hgvsp: ENSP00000452948.1:p.Thr575Met
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.28C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr575Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

15-91453878-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453878
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453878
    reference: chr 15
allele count: 8
allele frequency: 6.615178527130501e-5
allele num: 120934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.654G>A
  hgvsp: ENST00000557865.1:c.654G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1725G>A
  hgvsp: ENST00000360468.3:c.1725G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1725G>A
  hgvsp: ENST00000558161.1:c.1725G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.286G>A
  hgvsp: ENST00000558171.1:c.286G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.39G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.29G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.249G>A
  hgvsp: ENST00000431652.2:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1725G>A
  hgvsp: ENST00000559717.1:c.1725G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1725G>A
  hgvsp: ENST00000560451.1:c.1725G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.434G>A
  hgvsp: ENST00000560616.1:c.434G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2087G>A
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Thr575Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

15-91453888-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453888
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453888
    reference: chr 15
allele count: 1
allele frequency: 8.269520202437855e-6
allele num: 120926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1735G>C
  hgvsp: ENSP00000452948.1:p.Ala579Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.444G>C
  hgvsp: ENSP00000452866.1:p.Ala149Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.259G>C
  hgvsp: ENSP00000388221.2:p.Ala87Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1735G>C
  hgvsp: ENSP00000453999.1:p.Ala579Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1735G>C
  hgvsp: ENSP00000452631.1:p.Ala579Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.49G>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.39G>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.296G>C
  hgvsp: ENSP00000452928.1:p.Ala100Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1735G>C
  hgvsp: ENSP00000353655.3:p.Ala579Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.664G>C
  hgvsp: ENSP00000453140.1:p.Ala222Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2097G>C
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13529
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala579Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

15-91453900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453900
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453900
    reference: chr 15
allele count: 1
allele frequency: 8.272803984182399e-6
allele num: 120878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1747G>A
  hgvsp: ENSP00000452631.1:p.Asp583Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1747G>A
  hgvsp: ENSP00000452948.1:p.Asp583Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.676G>A
  hgvsp: ENSP00000453140.1:p.Asp226Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.456G>A
  hgvsp: ENSP00000452866.1:p.Asp153Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.271G>A
  hgvsp: ENSP00000388221.2:p.Asp91Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1747G>A
  hgvsp: ENSP00000453999.1:p.Asp583Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2109G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1747G>A
  hgvsp: ENSP00000353655.3:p.Asp583Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.51G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.308G>A
  hgvsp: ENSP00000452928.1:p.Asp104Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.61G>A
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp583Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/15-91453904-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453904
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453904
    reference: chr 15
allele count: 1
allele frequency: 8.275953389830508e-6
allele num: 120832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.680A>C
  hgvsp: ENSP00000453140.1:p.Tyr227Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2113A>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.65A>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1751A>C
  hgvsp: ENSP00000452948.1:p.Tyr584Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1751A>C
  hgvsp: ENSP00000453999.1:p.Tyr584Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.312A>C
  hgvsp: ENSP00000452928.1:p.Tyr105Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.460A>C
  hgvsp: ENSP00000452866.1:p.Tyr154Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1751A>C
  hgvsp: ENSP00000353655.3:p.Tyr584Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.275A>C
  hgvsp: ENSP00000388221.2:p.Tyr92Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.55A>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1751A>C
  hgvsp: ENSP00000452631.1:p.Tyr584Ser
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr584Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

15-91453904-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453904
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453904
    reference: chr 15
allele count: 1
allele frequency: 8.275953389830508e-6
allele num: 120832
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1751A>G
  hgvsp: ENSP00000353655.3:p.Tyr584Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.312A>G
  hgvsp: ENSP00000452928.1:p.Tyr105Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.65A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.680A>G
  hgvsp: ENSP00000453140.1:p.Tyr227Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2113A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.460A>G
  hgvsp: ENSP00000452866.1:p.Tyr154Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.55A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1751A>G
  hgvsp: ENSP00000452948.1:p.Tyr584Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1751A>G
  hgvsp: ENSP00000452631.1:p.Tyr584Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1751A>G
  hgvsp: ENSP00000453999.1:p.Tyr584Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.275A>G
  hgvsp: ENSP00000388221.2:p.Tyr92Cys
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr584Cys
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-91453936-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453936
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453936
    reference: chr 15
allele count: 1
allele frequency: 8.313381218409152e-6
allele num: 120288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.469+23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.284+23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.689+23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1760+23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.74+23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1760+23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.64+23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.321+23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1760+23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2122+23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1760+23T>C
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18588
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

15-91453942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453942
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453942
    reference: chr 15
allele count: 1
allele frequency: 8.328891257995735e-6
allele num: 120064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1760+29C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1760+29C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.74+29C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.64+29C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.284+29C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2122+29C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.469+29C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.321+29C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1760+29C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1760+29C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.689+29C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/15-91453944-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453944
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453944
    reference: chr 15
allele count: 1
allele frequency: 8.328475056217207e-6
allele num: 120070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.689+31C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2122+31C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1760+31C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1760+31C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.74+31C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1760+31C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.284+31C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1760+31C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.64+31C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.321+31C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.469+31C>A
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

15-91453945-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453945
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453945
    reference: chr 15
allele count: 5
allele frequency: 4.165139448868748e-5
allele num: 120044
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1760+32C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.321+32C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1760+32C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.469+32C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.284+32C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.64+32C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.689+32C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1760+32C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2122+32C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.74+32C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1760+32C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11753
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3774
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-91453946-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453946
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453946
    reference: chr 15
allele count: 3
allele frequency: 2.5e-5
allele num: 120000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.74+33C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1760+33C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2122+33C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1760+33C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1760+33C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.284+33C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1760+33C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.469+33C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.64+33C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.321+33C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.689+33C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11613
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

15-91453947-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453947
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453947
    reference: chr 15
allele count: 1
allele frequency: 8.337363058811759e-6
allele num: 119942
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.689+34C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.321+34C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.284+34C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.74+34C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1760+34C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1760+34C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1760+34C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2122+34C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.64+34C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1760+34C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.469+34C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8924
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

15-91453956-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453956
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453956
    reference: chr 15
allele count: 1
allele frequency: 8.351846593281774e-6
allele num: 119734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.74+43G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1760+43G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1760+43G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.284+43G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.469+43G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1760+43G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.321+43G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.689+43G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1760+43G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.64+43G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2122+43G>A
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10425
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10690
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

15-91453958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91453958
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91453958
    reference: chr 15
allele count: 1
allele frequency: 8.358408559010364e-6
allele num: 119640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.74+45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.64+45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1760+45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.689+45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1760+45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.469+45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2122+45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1760+45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1760+45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.321+45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.284+45C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

15-91454032-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454032
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454032
    reference: chr 15
allele count: 17
allele frequency: 1.435107801921356e-4
allele num: 118458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1761-45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1761-45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.470-45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2123-45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.322-45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.65-45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.285-45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1761-45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.690-45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.75-45C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1761-45C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7178
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16360
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19593
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

15-91454034-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454034
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454034
    reference: chr 15
allele count: 1
allele frequency: 8.443521286117163e-6
allele num: 118434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.470-43C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.690-43C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1761-43C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.75-43C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.65-43C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1761-43C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.285-43C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2123-43C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1761-43C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.322-43C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1761-43C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19670
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD

15-91454036-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454036
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454036
    reference: chr 15
allele count: 1
allele frequency: 8.442950980226608e-6
allele num: 118442
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1761-41A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.65-41A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1761-41A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.285-41A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.322-41A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1761-41A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2123-41A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.470-41A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.75-41A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1761-41A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.690-41A>G
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

15-91454037-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454037
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454037
    reference: chr 15
allele count: 2
allele frequency: 1.687222662774806e-5
allele num: 118538
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1761-40T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1761-40T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1761-40T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.470-40T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.65-40T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.285-40T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2123-40T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.75-40T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.322-40T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1761-40T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.690-40T>C
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-91454050-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454050
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454050
    reference: chr 15
allele count: 3
allele frequency: 2.518933987136644e-5
allele num: 119098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1761-27T>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.65-27T>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1761-27T>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.322-27T>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1761-27T>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2123-27T>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.285-27T>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.690-27T>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1761-27T>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.75-27T>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.470-27T>A
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

15-91454054-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454054
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454054
    reference: chr 15
allele count: 6
allele frequency: 5.024620641141594e-5
allele num: 119412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2123-23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1761-23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.285-23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1761-23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.75-23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.65-23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1761-23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1761-23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.690-23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.322-23T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.470-23T>C
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22268
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7678
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/15-91454057-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454057
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454057
    reference: chr 15
allele count: 3
allele frequency: 2.506391297809414e-5
allele num: 119694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2123-20C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1761-20C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.470-20C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.75-20C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1761-20C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.65-20C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.322-20C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.285-20C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1761-20C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1761-20C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.690-20C>A
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22600
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

15-91454057-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454057
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454057
    reference: chr 15
allele count: 2
allele frequency: 1.670927531872943e-5
allele num: 119694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1761-20C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.75-20C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.470-20C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.65-20C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.285-20C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.322-20C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1761-20C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1761-20C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2123-20C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1761-20C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.690-20C>G
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/15-91454065-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454065
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454065
    reference: chr 15
allele count: 23
allele frequency: 1.91376412441131e-4
allele num: 120182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.75-12C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.470-12C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1761-12C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1761-12C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2123-12C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.285-12C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1761-12C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.322-12C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.65-12C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.690-12C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1761-12C>A
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23333
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

15-91454065-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454065
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454065
    reference: chr 15
allele count: 1
allele frequency: 8.320713584396998e-6
allele num: 120182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.65-12C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.285-12C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.75-12C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1761-12C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2123-12C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1761-12C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1761-12C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1761-12C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.470-12C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.690-12C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.322-12C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

15-91454066-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454066
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454066
    reference: chr 15
allele count: 5
allele frequency: 4.155032575455391e-5
allele num: 120336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.690-11G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.75-11G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2123-11G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.470-11G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1761-11G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1761-11G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.65-11G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1761-11G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.285-11G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1761-11G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.322-11G>A
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

15-91454067-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454067
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454067
    reference: chr 15
allele count: 2
allele frequency: 1.660715768496222e-5
allele num: 120430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1761-10C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.470-10C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.65-10C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.690-10C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.75-10C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1761-10C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2123-10C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1761-10C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.285-10C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1761-10C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.322-10C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7962
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

15-91454080-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454080
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454080
    reference: chr 15
allele count: 8
allele frequency: 6.61791469507958e-5
allele num: 120884
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.78T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1764T>C
  hgvsp: ENST00000558161.1:c.1764T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.288T>C
  hgvsp: ENST00000431652.2:c.288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.693T>C
  hgvsp: ENST00000557865.1:c.693T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1764T>C
  hgvsp: ENST00000560451.1:c.1764T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1764T>C
  hgvsp: ENST00000559717.1:c.1764T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1764T>C
  hgvsp: ENST00000360468.3:c.1764T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.473T>C
  hgvsp: ENST00000560616.1:c.473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.68T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2126T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.325T>C
  hgvsp: ENST00000558171.1:c.325T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8026
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu588Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

15-91454084-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454084
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454084
    reference: chr 15
allele count: 12
allele frequency: 9.922603691208574e-5
allele num: 120936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.329C>T
  hgvsp: ENSP00000452928.1:p.Arg111Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.477C>T
  hgvsp: ENSP00000452866.1:p.Arg160Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.72C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2130C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1768C>T
  hgvsp: ENSP00000452631.1:p.Arg590Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.697C>T
  hgvsp: ENSP00000453140.1:p.Arg233Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1768C>T
  hgvsp: ENSP00000353655.3:p.Arg590Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1768C>T
  hgvsp: ENSP00000452948.1:p.Arg590Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.292C>T
  hgvsp: ENSP00000388221.2:p.Arg98Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1768C>T
  hgvsp: ENSP00000453999.1:p.Arg590Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.82C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24228
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8074
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg590Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

15-91454085-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454085
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454085
    reference: chr 15
allele count: 1
allele frequency: 8.266649031148734e-6
allele num: 120968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1769G>A
  hgvsp: ENSP00000453999.1:p.Arg590His
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.293G>A
  hgvsp: ENSP00000388221.2:p.Arg98His
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1769G>A
  hgvsp: ENSP00000353655.3:p.Arg590His
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1769G>A
  hgvsp: ENSP00000452948.1:p.Arg590His
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.73G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.478G>A
  hgvsp: ENSP00000452866.1:p.Arg160His
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.698G>A
  hgvsp: ENSP00000453140.1:p.Arg233His
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.83G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2131G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1769G>A
  hgvsp: ENSP00000452631.1:p.Arg590His
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.330G>A
  hgvsp: ENSP00000452928.1:p.Arg111His
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24288
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg590His
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/15-91454089-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454089
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454089
    reference: chr 15
allele count: 1
allele frequency: 8.261322141995606e-6
allele num: 121046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.87C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.702C>A
  hgvsp: ENST00000557865.1:c.702C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.77C>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1773C>A
  hgvsp: ENST00000558161.1:c.1773C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.482C>A
  hgvsp: ENST00000560616.1:c.482C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1773C>A
  hgvsp: ENST00000559717.1:c.1773C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.297C>A
  hgvsp: ENST00000431652.2:c.297C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.334C>A
  hgvsp: ENST00000558171.1:c.334C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1773C>A
  hgvsp: ENST00000560451.1:c.1773C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1773C>A
  hgvsp: ENST00000360468.3:c.1773C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2135C>A
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser591Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

15-91454089-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454089
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454089
    reference: chr 15
allele count: 3
allele frequency: 2.478396642598681e-5
allele num: 121046
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.297C>G
  hgvsp: ENST00000431652.2:c.297C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.334C>G
  hgvsp: ENST00000558171.1:c.334C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1773C>G
  hgvsp: ENST00000559717.1:c.1773C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.482C>G
  hgvsp: ENST00000560616.1:c.482C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.702C>G
  hgvsp: ENST00000557865.1:c.702C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1773C>G
  hgvsp: ENST00000560451.1:c.1773C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.77C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1773C>G
  hgvsp: ENST00000558161.1:c.1773C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2135C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1773C>G
  hgvsp: ENST00000360468.3:c.1773C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.87C>G
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser591Ser
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

15-91454098-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454098
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454098
    reference: chr 15
allele count: 1
allele frequency: 8.254502831294471e-6
allele num: 121146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.491C>T
  hgvsp: ENST00000560616.1:c.491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1782C>T
  hgvsp: ENST00000558161.1:c.1782C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.306C>T
  hgvsp: ENST00000431652.2:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1782C>T
  hgvsp: ENST00000559717.1:c.1782C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1782C>T
  hgvsp: ENST00000360468.3:c.1782C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2144C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.86C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1782C>T
  hgvsp: ENST00000560451.1:c.1782C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.711C>T
  hgvsp: ENST00000557865.1:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.343C>T
  hgvsp: ENST00000558171.1:c.343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.96C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8107
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn594Asn
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

15-91454105-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454105
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454105
    reference: chr 15
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1789C>T
  hgvsp: ENSP00000452948.1:p.Gln597Ter
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.498C>T
  hgvsp: ENSP00000452866.1:p.Gln167Ter
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2151C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.718C>T
  hgvsp: ENSP00000453140.1:p.Gln240Ter
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.103C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.313C>T
  hgvsp: ENSP00000388221.2:p.Gln105Ter
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1789C>T
  hgvsp: ENSP00000452631.1:p.Gln597Ter
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1789C>T
  hgvsp: ENSP00000453999.1:p.Gln597Ter
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1789C>T
  hgvsp: ENSP00000353655.3:p.Gln597Ter
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.93C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.350C>T
  hgvsp: ENSP00000452928.1:p.Gln118Ter
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gln597Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

15-91454110-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454110
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454110
    reference: chr 15
allele count: 2654
allele frequency: 2.189732842692365e-2
allele num: 121202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1794C>T
  hgvsp: ENST00000560451.1:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1794C>T
  hgvsp: ENST00000558161.1:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.723C>T
  hgvsp: ENST00000557865.1:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.318C>T
  hgvsp: ENST00000431652.2:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.503C>T
  hgvsp: ENST00000560616.1:c.503C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.355C>T
  hgvsp: ENST00000558171.1:c.355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1794C>T
  hgvsp: ENST00000360468.3:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1794C>T
  hgvsp: ENST00000559717.1:c.1794C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2156C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.108C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.98C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 23958
  bin: 2.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 5.25e1
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 306
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.75e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22142
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.75e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 3.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: p.Val598Val
num of homozygotes: 251
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/15-91454111-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454111
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454111
    reference: chr 15
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.724A>C
  hgvsp: ENSP00000453140.1:p.Ile242Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1795A>C
  hgvsp: ENSP00000353655.3:p.Ile599Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.356A>C
  hgvsp: ENSP00000452928.1:p.Ile120Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1795A>C
  hgvsp: ENSP00000452631.1:p.Ile599Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.109A>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.504A>C
  hgvsp: ENSP00000452866.1:p.Ile169Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.319A>C
  hgvsp: ENSP00000388221.2:p.Ile107Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1795A>C
  hgvsp: ENSP00000452948.1:p.Ile599Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2157A>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.99A>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1795A>C
  hgvsp: ENSP00000453999.1:p.Ile599Leu
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24683
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile599Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

15-91454125-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454125
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454125
    reference: chr 15
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1809C>T
  hgvsp: ENST00000560451.1:c.1809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.370C>T
  hgvsp: ENST00000558171.1:c.370C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2171C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.518C>T
  hgvsp: ENST00000560616.1:c.518C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.333C>T
  hgvsp: ENST00000431652.2:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.738C>T
  hgvsp: ENST00000557865.1:c.738C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.113C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1809C>T
  hgvsp: ENST00000559717.1:c.1809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1809C>T
  hgvsp: ENST00000558161.1:c.1809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1809C>T
  hgvsp: ENST00000360468.3:c.1809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.123C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala603Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

15-91454126-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454126
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454126
    reference: chr 15
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.519C>T
  hgvsp: ENSP00000452866.1:p.His174Tyr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1810C>T
  hgvsp: ENSP00000452631.1:p.His604Tyr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.334C>T
  hgvsp: ENSP00000388221.2:p.His112Tyr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.114C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1810C>T
  hgvsp: ENSP00000453999.1:p.His604Tyr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.371C>T
  hgvsp: ENSP00000452928.1:p.His125Tyr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2172C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.739C>T
  hgvsp: ENSP00000453140.1:p.His247Tyr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1810C>T
  hgvsp: ENSP00000353655.3:p.His604Tyr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1810C>T
  hgvsp: ENSP00000452948.1:p.His604Tyr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.124C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His604Tyr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ

15-91454130-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454130
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454130
    reference: chr 15
allele count: 1
allele frequency: 8.249191579225235e-6
allele num: 121224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1814A>G
  hgvsp: ENSP00000452948.1:p.Tyr605Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.128A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.743A>G
  hgvsp: ENSP00000453140.1:p.Tyr248Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2176A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.523A>G
  hgvsp: ENSP00000452866.1:p.Tyr175Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.338A>G
  hgvsp: ENSP00000388221.2:p.Tyr113Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1814A>G
  hgvsp: ENSP00000353655.3:p.Tyr605Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1814A>G
  hgvsp: ENSP00000452631.1:p.Tyr605Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.118A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1814A>G
  hgvsp: ENSP00000453999.1:p.Tyr605Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.375A>G
  hgvsp: ENSP00000452928.1:p.Tyr126Cys
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr605Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

15-91454131-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454131
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454131
    reference: chr 15
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1815T>C
  hgvsp: ENST00000360468.3:c.1815T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.339T>C
  hgvsp: ENST00000431652.2:c.339T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.744T>C
  hgvsp: ENST00000557865.1:c.744T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.129T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.524T>C
  hgvsp: ENST00000560616.1:c.524T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1815T>C
  hgvsp: ENST00000559717.1:c.1815T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2177T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.119T>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1815T>C
  hgvsp: ENST00000560451.1:c.1815T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1815T>C
  hgvsp: ENST00000558161.1:c.1815T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.376T>C
  hgvsp: ENST00000558171.1:c.376T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Tyr605Tyr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

15-91454132-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454132
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454132
    reference: chr 15
allele count: 455
allele frequency: 3.753382168547482e-3
allele num: 121224
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.525C>T
  hgvsp: ENST00000560616.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1816C>T
  hgvsp: ENST00000360468.3:c.1816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.130C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1816C>T
  hgvsp: ENST00000559717.1:c.1816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1816C>T
  hgvsp: ENST00000558161.1:c.1816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.340C>T
  hgvsp: ENST00000431652.2:c.340C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1816C>T
  hgvsp: ENST00000560451.1:c.1816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.745C>T
  hgvsp: ENST00000557865.1:c.745C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.377C>T
  hgvsp: ENST00000558171.1:c.377C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.120C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2178C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 24607
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8087
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 22232
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
hgvs: p.Leu606Leu
num of homozygotes: 8
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

15-91454140-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454140
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454140
    reference: chr 15
allele count: 26
allele frequency: 2.145249921615868e-4
allele num: 121198
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1824G>A
  hgvsp: ENST00000360468.3:c.1824G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.385G>A
  hgvsp: ENST00000558171.1:c.385G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.533G>A
  hgvsp: ENST00000560616.1:c.533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.348G>A
  hgvsp: ENST00000431652.2:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1824G>A
  hgvsp: ENST00000558161.1:c.1824G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.753G>A
  hgvsp: ENST00000557865.1:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2186G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1824G>A
  hgvsp: ENST00000560451.1:c.1824G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1824G>A
  hgvsp: ENST00000559717.1:c.1824G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.128G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.138G>A
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu608Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

15-91454144-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454144
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454144
    reference: chr 15
allele count: 3
allele frequency: 2.475451769948015e-5
allele num: 121190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.352G>A
  hgvsp: ENSP00000388221.2:p.Asp118Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.537G>A
  hgvsp: ENSP00000452866.1:p.Asp180Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.757G>A
  hgvsp: ENSP00000453140.1:p.Asp253Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.142G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1828G>A
  hgvsp: ENSP00000353655.3:p.Asp610Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1828G>A
  hgvsp: ENSP00000452948.1:p.Asp610Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.132G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.389G>A
  hgvsp: ENSP00000452928.1:p.Asp131Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1828G>A
  hgvsp: ENSP00000452631.1:p.Asp610Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1828G>A
  hgvsp: ENSP00000453999.1:p.Asp610Asn
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2190G>A
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp610Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-91454153-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454153
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454153
    reference: chr 15
allele count: 4
allele frequency: 3.309231100153879e-5
allele num: 120874
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.546A>C
  hgvsp: ENSP00000452866.1:p.Thr183Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1837A>C
  hgvsp: ENSP00000452948.1:p.Thr613Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.398A>C
  hgvsp: ENSP00000452928.1:p.Thr134Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.151A>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1837A>C
  hgvsp: ENSP00000353655.3:p.Thr613Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.141A>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1837A>C
  hgvsp: ENSP00000453999.1:p.Thr613Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.766A>C
  hgvsp: ENSP00000453140.1:p.Thr256Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.361A>C
  hgvsp: ENSP00000388221.2:p.Thr121Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1837A>C
  hgvsp: ENSP00000452631.1:p.Thr613Pro
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2199A>C
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24745
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr613Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ

15-91454155-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454155
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454155
    reference: chr 15
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1839C>T
  hgvsp: ENST00000558161.1:c.1839C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1839C>T
  hgvsp: ENST00000560451.1:c.1839C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.363C>T
  hgvsp: ENST00000431652.2:c.363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.143C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1839C>T
  hgvsp: ENST00000559717.1:c.1839C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.548C>T
  hgvsp: ENST00000560616.1:c.548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1839C>T
  hgvsp: ENST00000360468.3:c.1839C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2201C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.153C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.400C>T
  hgvsp: ENST00000558171.1:c.400C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.768C>T
  hgvsp: ENST00000557865.1:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr613Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum

15-91454163-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454163
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454163
    reference: chr 15
allele count: 2
allele frequency: 1.652209830648492e-5
allele num: 121050
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.161T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1847T>G
  hgvsp: ENSP00000353655.3:p.Phe616Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.776T>G
  hgvsp: ENSP00000453140.1:p.Phe259Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1847T>G
  hgvsp: ENSP00000453999.1:p.Phe616Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2209T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.371T>G
  hgvsp: ENSP00000388221.2:p.Phe124Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.408T>G
  hgvsp: ENSP00000452928.1:p.Phe137Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1847T>G
  hgvsp: ENSP00000452948.1:p.Phe616Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.556T>G
  hgvsp: ENSP00000452866.1:p.Phe186Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1847T>G
  hgvsp: ENSP00000452631.1:p.Phe616Cys
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.151T>G
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe616Cys
num of homozygotes: 1
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ

15-91454166-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454166
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454166
    reference: chr 15
allele count: 1
allele frequency: 8.265009256810368e-6
allele num: 120992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.411A>T
  hgvsp: ENSP00000452928.1:p.Asp138Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.374A>T
  hgvsp: ENSP00000388221.2:p.Asp125Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1850A>T
  hgvsp: ENSP00000353655.3:p.Asp617Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1850A>T
  hgvsp: ENSP00000453999.1:p.Asp617Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.164A>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.154A>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1850A>T
  hgvsp: ENSP00000452948.1:p.Asp617Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.559A>T
  hgvsp: ENSP00000452866.1:p.Asp187Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.779A>T
  hgvsp: ENSP00000453140.1:p.Asp260Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1850A>T
  hgvsp: ENSP00000452631.1:p.Asp617Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2212A>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp617Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

15-91454168-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454168
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454168
    reference: chr 15
allele count: 38
allele frequency: 3.142833512529981e-4
allele num: 120910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.166C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.376C>T
  hgvsp: ENSP00000388221.2:p.Pro126Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1852C>T
  hgvsp: ENSP00000452948.1:p.Pro618Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.156C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.561C>T
  hgvsp: ENSP00000452866.1:p.Pro188Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1852C>T
  hgvsp: ENSP00000353655.3:p.Pro618Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1852C>T
  hgvsp: ENSP00000453999.1:p.Pro618Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.781C>T
  hgvsp: ENSP00000453140.1:p.Pro261Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1852C>T
  hgvsp: ENSP00000452631.1:p.Pro618Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.413C>T
  hgvsp: ENSP00000452928.1:p.Pro139Ser
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2214C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8211
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Pro618Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

15-91454174-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454174
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454174
    reference: chr 15
allele count: 1
allele frequency: 8.278831029058698e-6
allele num: 120790
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1858G>A
  hgvsp: ENSP00000353655.3:p.Ala620Thr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1858G>A
  hgvsp: ENSP00000453999.1:p.Ala620Thr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1858G>A
  hgvsp: ENSP00000452631.1:p.Ala620Thr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.787G>A
  hgvsp: ENSP00000453140.1:p.Ala263Thr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.419G>A
  hgvsp: ENSP00000452928.1:p.Ala141Thr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.382G>A
  hgvsp: ENSP00000388221.2:p.Ala128Thr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.567G>A
  hgvsp: ENSP00000452866.1:p.Ala190Thr
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.172G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2220G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.162G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1858G>A
  hgvsp: ENSP00000452948.1:p.Ala620Thr
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala620Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-91454175-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454175
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454175
    reference: chr 15
allele count: 934
allele frequency: 7.735886562417174e-3
allele num: 120736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.420C>T
  hgvsp: ENSP00000452928.1:p.Ala141Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1859C>T
  hgvsp: ENSP00000452948.1:p.Ala620Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.788C>T
  hgvsp: ENSP00000453140.1:p.Ala263Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.163C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.383C>T
  hgvsp: ENSP00000388221.2:p.Ala128Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.173C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1859C>T
  hgvsp: ENSP00000452631.1:p.Ala620Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1859C>T
  hgvsp: ENSP00000453999.1:p.Ala620Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1859C>T
  hgvsp: ENSP00000353655.3:p.Ala620Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.568C>T
  hgvsp: ENSP00000452866.1:p.Ala190Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2221C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 4.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 21637
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 3.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 24681
  bin: 2.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
hgvs: p.Ala620Val
num of homozygotes: 36
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

15-91454176-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454176
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454176
    reference: chr 15
allele count: 2
allele frequency: 1.65694591728526e-5
allele num: 120704
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1860G>A
  hgvsp: ENST00000360468.3:c.1860G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1860G>A
  hgvsp: ENST00000559717.1:c.1860G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.421G>A
  hgvsp: ENST00000558171.1:c.421G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.789G>A
  hgvsp: ENST00000557865.1:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.164G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1860G>A
  hgvsp: ENST00000560451.1:c.1860G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.384G>A
  hgvsp: ENST00000431652.2:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2222G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.569G>A
  hgvsp: ENST00000560616.1:c.569G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.174G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1860G>A
  hgvsp: ENST00000558161.1:c.1860G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala620Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

15-91454178-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454178
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454178
    reference: chr 15
allele count: 2
allele frequency: 1.657907389293234e-5
allele num: 120634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.571C>T
  hgvsp: ENSP00000452866.1:p.Pro191Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1862C>T
  hgvsp: ENSP00000452948.1:p.Pro621Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1862C>T
  hgvsp: ENSP00000452631.1:p.Pro621Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1862C>T
  hgvsp: ENSP00000353655.3:p.Pro621Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.386C>T
  hgvsp: ENSP00000388221.2:p.Pro129Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.791C>T
  hgvsp: ENSP00000453140.1:p.Pro264Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.176C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1862C>T
  hgvsp: ENSP00000453999.1:p.Pro621Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.423C>T
  hgvsp: ENSP00000452928.1:p.Pro142Leu
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.166C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2224C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21652
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro621Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

15-91454180-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454180
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454180
    reference: chr 15
allele count: 1
allele frequency: 8.297653423611802e-6
allele num: 120516
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.168T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2226T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.573T>G
  hgvsp: ENSP00000452866.1:p.Phe192Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.793T>G
  hgvsp: ENSP00000453140.1:p.Phe265Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.388T>G
  hgvsp: ENSP00000388221.2:p.Phe130Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1864T>G
  hgvsp: ENSP00000353655.3:p.Phe622Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1864T>G
  hgvsp: ENSP00000452948.1:p.Phe622Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.425T>G
  hgvsp: ENSP00000452928.1:p.Phe143Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.178T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1864T>G
  hgvsp: ENSP00000453999.1:p.Phe622Val
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1864T>G
  hgvsp: ENSP00000452631.1:p.Phe622Val
  variant of: http://identifiers.org/hgnc/6825
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21443
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe622Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

15-91454200-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454200
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454200
    reference: chr 15
allele count: 1
allele frequency: 8.439245868989148e-6
allele num: 118494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.189+9C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.584+9C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.436+9C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1875+9C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1875+9C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1875+9C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.188C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1875+9C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2237+9C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.804+9C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.399+9C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

15-91454211-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454211
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454211
    reference: chr 15
allele count: 8
allele frequency: 6.826288035223647e-5
allele num: 117194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.584+20G>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.436+20G>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.189+20G>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.804+20G>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1875+20G>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1875+20G>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2237+20G>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1875+20G>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.399+20G>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.199G>C
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1875+20G>C
  variant of: http://identifiers.org/hgnc/6825
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16181
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19062
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

15-91454219-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454219
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454219
    reference: chr 15
allele count: 1
allele frequency: 8.586049386956073e-6
allele num: 116468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.189+28A>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1875+28A>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.436+28A>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2237+28A>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1875+28A>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1875+28A>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1875+28A>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.804+28A>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.584+28A>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.207A>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.399+28A>T
  variant of: http://identifiers.org/hgnc/6825
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16118
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6471
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

15-91454224-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454224
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454224
    reference: chr 15
allele count: 1
allele frequency: 8.625150940141453e-6
allele num: 115940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1875+33C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1875+33C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.804+33C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.212C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1875+33C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2237+33C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.399+33C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.189+33C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.584+33C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.436+33C>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1875+33C>G
  variant of: http://identifiers.org/hgnc/6825
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11942
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12919
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

15-91454227-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454227
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454227
    reference: chr 15
allele count: 44
allele frequency: 3.812758877662432e-4
allele num: 115402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1875+36G>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2237+36G>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1875+36G>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.584+36G>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.399+36G>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.436+36G>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.215G>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1875+36G>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.189+36G>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1875+36G>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.804+36G>T
  variant of: http://identifiers.org/hgnc/6825
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14319
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12356
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12358
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10407
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

15-91454240-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454240
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454240
    reference: chr 15
allele count: 1
allele frequency: 8.809641271407429e-6
allele num: 113512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2237+49C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.804+49C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.228C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.399+49C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1875+49C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.436+49C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.584+49C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1875+49C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.189+49C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1875+49C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1875+49C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10264
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

15-91454357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454357
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454357
    reference: chr 15
allele count: 1
allele frequency: 8.706857520983527e-6
allele num: 114852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1876-44C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.437-44C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.585-44C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1876-44C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1876-44C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.345C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2238-44C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.190-44C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1876-44C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.400-44C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.805-44C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

15-91454365-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454365
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454365
    reference: chr 15
allele count: 1
allele frequency: 8.660108078148815e-6
allele num: 115472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1876-36A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.805-36A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2238-36A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.190-36A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.353A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.585-36A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1876-36A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1876-36A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1876-36A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.437-36A>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.400-36A>G
  variant of: http://identifiers.org/hgnc/6825
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

15-91454378-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454378
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454378
    reference: chr 15
allele count: 2
allele frequency: 1.718272105570638e-5
allele num: 116396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.585-23C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2238-23C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.400-23C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.366C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1876-23C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1876-23C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1876-23C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1876-23C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.805-23C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.190-23C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.437-23C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26494
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10887
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

15-91454380-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454380
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454380
    reference: chr 15
allele count: 1
allele frequency: 8.563110121596164e-6
allele num: 116780
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1876-21T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.400-21T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2238-21T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1876-21T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.805-21T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.368T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.190-21T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1876-21T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.437-21T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1876-21T>G
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.585-21T>G
  variant of: http://identifiers.org/hgnc/6825
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

15-91454383-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454383
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454383
    reference: chr 15
allele count: 1
allele frequency: 8.550224015869215e-6
allele num: 116956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2238-18C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1876-18C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.437-18C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.400-18C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1876-18C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1876-18C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1876-18C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.371C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.585-18C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.190-18C>T
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.805-18C>T
  variant of: http://identifiers.org/hgnc/6825
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5924
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

15-91454384-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 91454384
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 91454384
    reference: chr 15
allele count: 5
allele frequency: 4.267522447168072e-5
allele num: 117164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453999
  ensembl transcript: ENST00000560451
  gene symbol: MAN2A2
  hgvsc: ENST00000560451.1:c.1876-17G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452866
  ensembl transcript: ENST00000560616
  gene symbol: MAN2A2
  hgvsc: ENST00000560616.1:c.585-17G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452631
  ensembl transcript: ENST00000558161
  gene symbol: MAN2A2
  hgvsc: ENST00000558161.1:c.1876-17G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000453140
  ensembl transcript: ENST00000557865
  gene symbol: MAN2A2
  hgvsc: ENST00000557865.1:c.805-17G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000388221
  ensembl transcript: ENST00000431652
  gene symbol: MAN2A2
  hgvsc: ENST00000431652.2:c.400-17G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000561240
  gene symbol: MAN2A2
  hgvsc: ENST00000561240.1:n.190-17G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560505
  gene symbol: MAN2A2
  hgvsc: ENST00000560505.1:n.372G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000353655
  ensembl transcript: ENST00000360468
  gene symbol: MAN2A2
  hgvsc: ENST00000360468.3:c.1876-17G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452928
  ensembl transcript: ENST00000558171
  gene symbol: MAN2A2
  hgvsc: ENST00000558171.1:c.437-17G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl transcript: ENST00000560192
  gene symbol: MAN2A2
  hgvsc: ENST00000560192.1:n.2238-17G>A
  variant of: http://identifiers.org/hgnc/6825
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196547
  ensembl protein: ENSP00000452948
  ensembl transcript: ENST00000559717
  gene symbol: MAN2A2
  hgvsc: ENST00000559717.1:c.1876-17G>A
  variant of: http://identifiers.org/hgnc/6825
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11696
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3806
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2610
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9768
bin: 9.75e1
variant carriers: 169

GenotypeQuality
all individuals: 3664
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8127
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4823
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.196604884808592e-4
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 148
allele frequency: 1.428847267812319e-2
allele num: 10358
num of homozygotes: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.807555582334157e-4
allele num: 66388
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

QD
type: SiteQuality
SIO_000300: 1.447e1

DP
type: SiteQuality
SIO_000300: 1.931358e6

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4821
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8166
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9626
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3675
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-1

FS
type: SiteQuality
SIO_000300: 1.807e0

DP
type: SiteQuality
SIO_000300: 1.928047e6

QD
type: SiteQuality
SIO_000300: 1.091e1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

GenotypeDepth
all individuals: 230
bin: 7.25e1
variant carriers: 114

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4728
bin: 7.75e1
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GenotypeQuality
all individuals: 2559
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3754
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3607
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variant carriers: 0

GenotypeQuality
all individuals: 10253
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variant carriers: 1296

GenotypeQuality
all individuals: 1879
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24958
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 46
allele frequency: 7.083461656914074e-3
allele num: 6494
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 1.850994909763998e-3
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 119
allele frequency: 7.207752877044215e-3
allele num: 16510
num of homozygotes: 2

Latino
type: Population
allele count: 110
allele frequency: 9.522160664819944e-3
allele num: 11552
num of homozygotes: 1

Other
type: Population
allele count: 14
allele frequency: 1.552106430155211e-2
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 27
allele frequency: 2.60316236020054e-3
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 973
allele frequency: 1.46487609526964e-2
allele num: 66422
num of homozygotes: 5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.26e0

DP
type: SiteQuality
SIO_000300: 1.96322e6

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.25e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

GenotypeDepth
all individuals: 356
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 1931
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GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 349
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GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 2638
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variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9168
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.917647e6

VQSLOD
type: SiteQuality
SIO_000300: 3.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.355e0

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

FS
type: SiteQuality
SIO_000300: 6.493e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

QD
type: SiteQuality
SIO_000300: 1.387e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeDepth
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3847
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variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 347
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 35
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3696
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GenotypeQuality
all individuals: 25472
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GenotypeQuality
all individuals: 1930
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2638
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66428
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.472e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e-1

QD
type: SiteQuality
SIO_000300: 1.091e1

MQRankSum
type: SiteQuality
SIO_000300: -3.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.713e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

DP
type: SiteQuality
SIO_000300: 1.918102e6

GenotypeDepth
all individuals: 6835
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 9174
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variant carriers: 8

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 8284
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 2637
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variant carriers: 0

GenotypeQuality
all individuals: 3697
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 3848
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variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4826
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.033423667570009e-5
allele num: 66420
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 1.111e0

MQRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.917971e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

QD
type: SiteQuality
SIO_000300: 1.138e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

GenotypeDepth
all individuals: 156
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 115
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variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 9163
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variant carriers: 1

GenotypeQuality
all individuals: 377
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variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 3850
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variant carriers: 0

GenotypeQuality
all individuals: 1926
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variant carriers: 0

GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 8266
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 3695
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 25444
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variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4826
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

FS
type: SiteQuality
SIO_000300: 4.348e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.193e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.42e-1

DP
type: SiteQuality
SIO_000300: 1.91732e6

GenotypeDepth
all individuals: 118
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 69
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 38
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GenotypeQuality
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GenotypeQuality
all individuals: 422
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GenotypeQuality
all individuals: 114
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25335
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GenotypeQuality
all individuals: 9162
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2635
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506341698550899e-5
allele num: 66386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.81e0

DP
type: SiteQuality
SIO_000300: 1.915312e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.414e0

FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

MQRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.061e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 49
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 135
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 73
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8242
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variant carriers: 0

GenotypeQuality
all individuals: 4811
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.466e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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SIO_000300: 1.1e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 2.42e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506614035616356e-5
allele num: 66374
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66052
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.695559433779329e-5
allele num: 10314
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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VQSLOD
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QD
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BaseQRankSum
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SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
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ClippingRankSum
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SIO_000300: 8.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.865883e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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DP
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QD
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -4.0e-4

FS
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MQRankSum
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SIO_000300: 9.18e-1

BaseQRankSum
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SIO_000300: -4.168e0

ClippingRankSum
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SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65942
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.710623422023694e-5
allele num: 10298
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
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Other
type: Population
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VQSLOD
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SIO_000300: -9.299999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.639e0

InbreedingCoeff
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SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 1.826837e6

MQ
type: SiteQuality
SIO_000300: 5.88e1

FS
type: SiteQuality
SIO_000300: 1.547e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

QD
type: SiteQuality
SIO_000300: 1.259e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 4
allele frequency: 4.668534080298786e-4
allele num: 8568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65930
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QD
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SIO_000300: 1.605e1

FS
type: SiteQuality
SIO_000300: 2.835e0

InbreedingCoeff
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

VQSLOD
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DP
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MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: -2.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.78e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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allele num: 16292
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.919423900350331e-4
allele num: 10276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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Other
type: Population
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InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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QD
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FS
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MQRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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African
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allele frequency: 9.721952167995334e-5
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European (Finnish)
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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East Asian
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South Asian
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 0
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Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
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allele num: 10256
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South Asian
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele num: 11464
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.97e-1

MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 2.707e0

DP
type: SiteQuality
SIO_000300: 1.781681e6

QD
type: SiteQuality
SIO_000300: 2.684e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.52e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.521097624045511e-5
allele num: 65742
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: -1.283e0

VQSLOD
type: SiteQuality
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FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 17

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65242
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15930
num of homozygotes: 0

European (Finnish)
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allele count: 17
allele frequency: 2.584372149589541e-3
allele num: 6578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -3.007e0

ReadPosRankSum
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SIO_000300: 5.2e-1

DP
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SIO_000300: 1.532869e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

VQSLOD
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SIO_000300: 5.36e0

ClippingRankSum
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SIO_000300: -5.81e-1

QD
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SIO_000300: 1.445e1

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15934
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.817396426467701e-5
allele num: 10186
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65232
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

VQSLOD
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SIO_000300: 8.090000000000001e-1

MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -1.043e0

DP
type: SiteQuality
SIO_000300: 1.535916e6

BaseQRankSum
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SIO_000300: 2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.1e-1

FS
type: SiteQuality
SIO_000300: 9.864000000000001e0

QD
type: SiteQuality
SIO_000300: 1.206e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15964
num of homozygotes: 0

African
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allele frequency: 9.805844283192783e-5
allele num: 10198
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.532e1

DP
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 3.064476587398872e-5
allele num: 65264
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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Other
type: Population
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InbreedingCoeff
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DP
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MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 3.589375448671931e-4
allele num: 8358
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
allele num: 888
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.79e-1

BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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FS
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MQ
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.130474480323828e-5
allele num: 65714
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 896
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

FS
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QD
type: SiteQuality
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DP
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.554840276934289e-5
allele num: 65864
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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FS
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ReadPosRankSum
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DP
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VQSLOD
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InbreedingCoeff
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SIO_000300: 9.0e-4

BaseQRankSum
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SIO_000300: -2.474e0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

QD
type: SiteQuality
SIO_000300: 1.213e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16152
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.036560184622859e-5
allele num: 65864
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 3.798e0

ReadPosRankSum
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SIO_000300: 1.4e-2

MQRankSum
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -2.474e0

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.213e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.612044e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

European (Non-Finnish)
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allele count: 20
allele frequency: 3.024803387779795e-4
allele num: 66120
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.939487975174554e-4
allele num: 10312
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

InbreedingCoeff
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MQ
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FS
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SIO_000300: 2.102e0

ReadPosRankSum
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ClippingRankSum
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SIO_000300: -9.2e-2

BaseQRankSum
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SIO_000300: -2.113e0

DP
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SIO_000300: 1.632384e6

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.39e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-5
allele num: 66120
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
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ReadPosRankSum
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QD
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FS
type: SiteQuality
SIO_000300: 2.102e0

MQRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: 5.0e-4

DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

African
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allele count: 4
allele frequency: 3.875217981011432e-4
allele num: 10322
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66180
num of homozygotes: 0

East Asian
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allele num: 8592
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InbreedingCoeff
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MQ
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DP
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SIO_000300: 1.633881e6

MQRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.020509257860875e-5
allele num: 66214
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.757e1

InbreedingCoeff
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BaseQRankSum
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FS
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DP
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MQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 1.204166415798663e-4
allele num: 66436
num of homozygotes: 0

South Asian
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Latino
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

InbreedingCoeff
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MQRankSum
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DP
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FS
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BaseQRankSum
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VQSLOD
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MQ
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.523775129408932e-5
allele num: 66456
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 4.267772222899646e-4
allele num: 16402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.237e0

ReadPosRankSum
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QD
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MQ
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ClippingRankSum
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SIO_000300: -3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.64951e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.134e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.79e-1

GenotypeDepth
all individuals: 120
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variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2412
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GenotypeQuality
all individuals: 1438
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

InbreedingCoeff
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SIO_000300: -2.0e-4

VQSLOD
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.933e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.216e1

DP
type: SiteQuality
SIO_000300: 1.649559e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.31e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503533303262667e-5
allele num: 66510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 3.985e0

ClippingRankSum
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SIO_000300: 3.42e-1

BaseQRankSum
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SIO_000300: -2.475e0

VQSLOD
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SIO_000300: 4.14e-1

DP
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SIO_000300: 1.651243e6

MQRankSum
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SIO_000300: -1.153e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.886280546469117e-4
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.153e0

FS
type: SiteQuality
SIO_000300: 3.985e0

VQSLOD
type: SiteQuality
SIO_000300: 4.14e-1

DP
type: SiteQuality
SIO_000300: 1.651243e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.42e-1

BaseQRankSum
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SIO_000300: -2.475e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.21e-1

QD
type: SiteQuality
SIO_000300: 1.263e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 31
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 41893
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502358703163967e-5
allele num: 66562
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.033e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-1

VQSLOD
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SIO_000300: -1.748e0

BaseQRankSum
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SIO_000300: -1.291e0

FS
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SIO_000300: 6.683e0

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.32e-1

DP
type: SiteQuality
SIO_000300: 1.65306e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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MQRankSum
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VQSLOD
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SIO_000300: -4.967e-1

BaseQRankSum
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DP
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GenotypeDepth
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variant carriers: 137

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4504
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variant carriers: 2366

GenotypeQuality
all individuals: 10
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variant carriers: 2

Latino
type: Population
allele count: 178
allele frequency: 1.539259771705292e-2
allele num: 11564
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 176
allele frequency: 2.643357063470608e-3
allele num: 66582
num of homozygotes: 1

African
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allele count: 2269
allele frequency: 2.181311286291098e-1
allele num: 10402
num of homozygotes: 247

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 18
allele frequency: 1.091835496785151e-3
allele num: 16486
num of homozygotes: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 13
allele frequency: 1.434878587196468e-2
allele num: 906
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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MQ
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SIO_000300: 5.959e1

FS
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InbreedingCoeff
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SIO_000300: 1.563e-1

DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 8182
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
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SIO_000300: 1.1e0

InbreedingCoeff
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SIO_000300: 1.0e-4

MQRankSum
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ReadPosRankSum
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FS
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SIO_000300: 3.574e0

VQSLOD
type: SiteQuality
SIO_000300: 8.58e-1

BaseQRankSum
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SIO_000300: 1.23e0

DP
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QD
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SIO_000300: 1.102e1

MQ
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501636784094663e-5
allele num: 66594
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.679e1

FS
type: SiteQuality
SIO_000300: 1.2118e1

InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
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SIO_000300: -1.399e0

VQSLOD
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SIO_000300: -1.307e0

ReadPosRankSum
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SIO_000300: 1.92e0

DP
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SIO_000300: 1.669172e6

BaseQRankSum
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SIO_000300: 2.51e0

MQRankSum
type: SiteQuality
SIO_000300: -4.77e-1

QD
type: SiteQuality
SIO_000300: 1.615e1

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
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SIO_000300: 1.669186e6

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -1.798e0

VQSLOD
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SIO_000300: 3.46e-1

ClippingRankSum
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SIO_000300: 4.18e-1

FS
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SIO_000300: 3.572e0

InbreedingCoeff
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SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

QD
type: SiteQuality
SIO_000300: 1.028e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50154659299078e-5
allele num: 66598
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 1.8e0

QD
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SIO_000300: 1.709e1

BaseQRankSum
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SIO_000300: 2.82e0

MQRankSum
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SIO_000300: 4.41e-1

ReadPosRankSum
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SIO_000300: -1.651e0

VQSLOD
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SIO_000300: -1.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.669019e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

BaseQRankSum
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SIO_000300: 2.36e0

FS
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SIO_000300: 0.0e0

MQ
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SIO_000300: 5.892e1

DP
type: SiteQuality
SIO_000300: 1.66902e6

MQRankSum
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SIO_000300: 3.11e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.693e0

VQSLOD
type: SiteQuality
SIO_000300: -1.068e0

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

GenotypeDepth
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variant carriers: 30

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 447

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 664
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 432
allele frequency: 4.153846153846154e-2
allele num: 10400
num of homozygotes: 8

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 1.815980629539952e-3
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003093185981561e-5
allele num: 66598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.941e0

VQSLOD
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SIO_000300: 5.59e0

MQRankSum
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SIO_000300: 4.28e-1

MQ
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SIO_000300: 5.964e1

ClippingRankSum
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SIO_000300: -1.48e-1

InbreedingCoeff
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SIO_000300: 3.18e-2

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 7.58e-1

DP
type: SiteQuality
SIO_000300: 1.684236e6

QD
type: SiteQuality
SIO_000300: 1.299e1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8178
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 1.5767131594906e-3
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -1.649e0

ClippingRankSum
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SIO_000300: -3.73e-1

MQ
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SIO_000300: 5.969e1

MQRankSum
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SIO_000300: 1.41e-1

InbreedingCoeff
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SIO_000300: -3.0e-4

FS
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SIO_000300: 2.464e0

VQSLOD
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SIO_000300: 1.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 1.665844e6

QD
type: SiteQuality
SIO_000300: 1.169e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.886280546469117e-4
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

East Asian
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allele count: 0
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allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.35e-1

FS
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SIO_000300: 1.536e0

QD
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ReadPosRankSum
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SIO_000300: 6.5e-1

DP
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 120
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GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 628
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
all individuals: 1290
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.025911419102139e-5
allele num: 66380
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.663895e6

BaseQRankSum
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SIO_000300: -4.702e0

ReadPosRankSum
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SIO_000300: 1.08e0

ClippingRankSum
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SIO_000300: 6.25e-1

MQRankSum
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SIO_000300: -4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.541e1

QD
type: SiteQuality
SIO_000300: 3.0e-1

FS
type: SiteQuality
SIO_000300: 1.36801e2

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeDepth
all individuals: 2150
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.284e0

ClippingRankSum
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SIO_000300: 1.2e0

VQSLOD
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SIO_000300: -1.07e0

DP
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BaseQRankSum
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SIO_000300: -3.261e0

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.23e1

FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.888e1

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 638
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GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926040061633282e-4
allele num: 10384
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

ClippingRankSum
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SIO_000300: -3.8e-1

DP
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SIO_000300: 1.655092e6

MQRankSum
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QD
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SIO_000300: 1.53e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
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GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503940323647958e-5
allele num: 66492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.701000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -3.911e-1

ReadPosRankSum
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QD
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SIO_000300: 1.357e1

MQRankSum
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SIO_000300: 4.37e-1

DP
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SIO_000300: 1.653228e6

InbreedingCoeff
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SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.81e-1

GenotypeDepth
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 38

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 37
allele frequency: 5.567258501354198e-4
allele num: 66460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.1020258725897e-5
allele num: 16388
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.234e1

ReadPosRankSum
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SIO_000300: 5.600000000000001e-1

MQRankSum
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SIO_000300: 1.35e-1

InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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VQSLOD
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DP
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SIO_000300: 1.652141e6

ClippingRankSum
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SIO_000300: 3.2e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
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South Asian
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allele count: 1
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allele num: 16336
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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FS
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DP
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 84

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 888

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele frequency: 3.061849357011635e-4
allele num: 16330
num of homozygotes: 0

East Asian
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Latino
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allele frequency: 2.781157656874674e-3
allele num: 11506
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African
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allele frequency: 8.531400966183575e-2
allele num: 10350
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Other
type: Population
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European (Non-Finnish)
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allele frequency: 1.807392234238033e-4
allele num: 66394
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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VQSLOD
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 141
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GenotypeQuality
all individuals: 2232
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variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.738223535546671e-4
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 9.6e-2

BaseQRankSum
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InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
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QD
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SIO_000300: 1.232e1

MQRankSum
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SIO_000300: -4.17e-1

ClippingRankSum
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SIO_000300: -3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.48e-1

DP
type: SiteQuality
SIO_000300: 1.628143e6

GenotypeDepth
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.013954609843576e-5
allele num: 66358
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.014e1

MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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SIO_000300: 3.1e-2

InbreedingCoeff
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SIO_000300: 7.0e-4

DP
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SIO_000300: 1.625288e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.50793172085168e-5
allele num: 66316
num of homozygotes: 0

African
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Other
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MQRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.56e1

ClippingRankSum
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SIO_000300: 1.3e0

VQSLOD
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BaseQRankSum
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SIO_000300: 4.58e-1

ReadPosRankSum
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SIO_000300: -8.100000000000001e-1

FS
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SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 3.62e0

DP
type: SiteQuality
SIO_000300: 1.621416e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.188212927756654e-4
allele num: 8416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65314
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1307e1

InbreedingCoeff
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SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -5.47e-1

DP
type: SiteQuality
SIO_000300: 1.53468e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.362e0

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

QD
type: SiteQuality
SIO_000300: 2.077e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.082954299328568e-4
allele num: 64638
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 1.534683855125844e-4
allele num: 6516
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

DP
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SIO_000300: 1.451223e6

FS
type: SiteQuality
SIO_000300: 1.0035e1

ClippingRankSum
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SIO_000300: 3.61e-1

QD
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SIO_000300: 1.674e1

InbreedingCoeff
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SIO_000300: -2.0e-4

MQ
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SIO_000300: 6.0e1

MQRankSum
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SIO_000300: -1.68e-1

ReadPosRankSum
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SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.018e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556565593674117e-5
allele num: 64244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

BaseQRankSum
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DP
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FS
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 10944
num of homozygotes: 0

Other
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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QD
type: SiteQuality
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ReadPosRankSum
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

South Asian
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allele frequency: 4.465424853278898e-4
allele num: 15676
num of homozygotes: 0

East Asian
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allele count: 37
allele frequency: 4.561143984220907e-3
allele num: 8112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

VQSLOD
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ClippingRankSum
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MQ
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QD
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10660
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.595761657038905e-5
allele num: 62666
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

DP
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -2.367e0

FS
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -3.152e0

MQRankSum
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SIO_000300: -1.977e0

QD
type: SiteQuality
SIO_000300: 4.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576491360827343e-5
allele num: 63432
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.317e0

ClippingRankSum
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SIO_000300: 5.639999999999999e-1

DP
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FS
type: SiteQuality
SIO_000300: 3.857e0

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.135757354284671e-5
allele num: 10946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63744
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ClippingRankSum
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SIO_000300: 1.23e0

MQ
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SIO_000300: 5.943e1

FS
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 1.11e0

BaseQRankSum
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InbreedingCoeff
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SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 1.48588e6

QD
type: SiteQuality
SIO_000300: 1.402e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.25140783381304e-4
allele num: 15982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11066
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

FS
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.15e1

DP
type: SiteQuality
SIO_000300: 1.558507e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.992805755395684e-5
allele num: 11120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.998e0

InbreedingCoeff
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QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: 2.03e0

ReadPosRankSum
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SIO_000300: -2.067e0

VQSLOD
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DP
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SIO_000300: 1.569964e6

MQ
type: SiteQuality
SIO_000300: 5.89e1

MQRankSum
type: SiteQuality
SIO_000300: 8.27e-1

BaseQRankSum
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SIO_000300: -2.514e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.196172248803828e-4
allele num: 8360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

ClippingRankSum
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QD
type: SiteQuality
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VQSLOD
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MQ
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SIO_000300: 5.931e1

BaseQRankSum
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FS
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InbreedingCoeff
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SIO_000300: -7.0e-4

DP
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ReadPosRankSum
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SIO_000300: -1.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0