12-111800979-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111800979
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111800979
    reference: chr 12
allele count: 1
allele frequency: 8.963625607285635e-6
allele num: 111562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.195G>A
  hgvsp: ENST00000450786.2:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.253G>A
  hgvsp: ENSP00000447349.1:p.Gly85Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.253G>A
  hgvsp: ENSP00000449994.1:p.Gly85Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.253G>A
  hgvsp: ENSP00000447353.1:p.Gly85Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.292G>A
  hgvsp: ENSP00000354461.3:p.Gly98Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.253G>A
  hgvsp: ENSP00000376426.4:p.Gly85Arg
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45078
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly98Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

12-111800980-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111800980
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111800980
    reference: chr 12
allele count: 1
allele frequency: 8.959770629871875e-6
allele num: 111610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.252G>A
  hgvsp: ENST00000547710.1:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.252G>A
  hgvsp: ENST00000547838.2:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.252G>A
  hgvsp: ENST00000392658.5:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.194G>A
  hgvsp: ENSP00000390552.2:p.Arg65Gln
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.291G>A
  hgvsp: ENST00000361483.3:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.252G>A
  hgvsp: ENST00000548163.1:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4294
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45056
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg65Gln
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

12-111800981-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111800981
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111800981
    reference: chr 12
allele count: 6
allele frequency: 5.372204215389574e-5
allele num: 111686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.251C>T
  hgvsp: ENSP00000449994.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.290C>T
  hgvsp: ENSP00000354461.3:p.Ala97Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.251C>T
  hgvsp: ENSP00000376426.4:p.Ala84Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.251C>T
  hgvsp: ENSP00000447353.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.251C>T
  hgvsp: ENSP00000447349.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.193C>T
  hgvsp: ENSP00000390552.2:p.Arg65Trp
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15044
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45258
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala97Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

12-111800987-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111800987
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111800987
    reference: chr 12
allele count: 1
allele frequency: 8.901073469460416e-6
allele num: 112346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.245G>A
  hgvsp: ENSP00000447353.1:p.Arg82His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.284G>A
  hgvsp: ENSP00000354461.3:p.Arg95His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.245G>A
  hgvsp: ENSP00000449994.1:p.Arg82His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.245G>A
  hgvsp: ENSP00000447349.1:p.Arg82His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.187G>A
  hgvsp: ENSP00000390552.2:p.Ala63Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.245G>A
  hgvsp: ENSP00000376426.4:p.Arg82His
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4417
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg95His
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP

12-111800988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111800988
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111800988
    reference: chr 12
allele count: 3
allele frequency: 2.669371629918317e-5
allele num: 112386
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.283C>T
  hgvsp: ENSP00000354461.3:p.Arg95Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.244C>T
  hgvsp: ENSP00000447353.1:p.Arg82Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.244C>T
  hgvsp: ENSP00000376426.4:p.Arg82Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.186C>T
  hgvsp: ENST00000450786.2:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.244C>T
  hgvsp: ENSP00000449994.1:p.Arg82Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.244C>T
  hgvsp: ENSP00000447349.1:p.Arg82Cys
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15348
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg95Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

12-111800992-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111800992
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111800992
    reference: chr 12
allele count: 1
allele frequency: 8.871854927428227e-6
allele num: 112716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.240T>C
  hgvsp: ENST00000392658.5:c.240T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.182T>C
  hgvsp: ENSP00000390552.2:p.Leu61Pro
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.240T>C
  hgvsp: ENST00000547710.1:c.240T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.279T>C
  hgvsp: ENST00000361483.3:c.279T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.240T>C
  hgvsp: ENST00000547838.2:c.240T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.240T>C
  hgvsp: ENST00000548163.1:c.240T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4086
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45675
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4456
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu61Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

12-111800995-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111800995
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111800995
    reference: chr 12
allele count: 3
allele frequency: 2.655055225148683e-5
allele num: 112992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.237C>T
  hgvsp: ENST00000548163.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.237C>T
  hgvsp: ENST00000547710.1:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.237C>T
  hgvsp: ENST00000392658.5:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.276C>T
  hgvsp: ENST00000361483.3:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.179C>T
  hgvsp: ENSP00000390552.2:p.Ser60Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.237C>T
  hgvsp: ENST00000547838.2:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15743
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4051
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser60Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

12-111801003-ACTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801003
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801000
    reference: chr 12
allele count: 1
allele frequency: 8.815543566416305e-6
allele num: 113436
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.226_228delGAG
  hgvsp: ENSP00000449994.1:p.Glu76del
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.168_170delGAG
  hgvsp: ENSP00000390552.2:p.Arg56del
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.265_267delGAG
  hgvsp: ENSP00000354461.3:p.Glu89del
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.226_228delGAG
  hgvsp: ENSP00000376426.4:p.Glu76del
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.226_228delGAG
  hgvsp: ENSP00000447353.1:p.Glu76del
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.226_228delGAG
  hgvsp: ENSP00000447349.1:p.Glu76del
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu89del
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: ACTC
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

12-111801009-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801009
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801009
    reference: chr 12
allele count: 2
allele frequency: 1.761617869851672e-5
allele num: 113532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.223G>A
  hgvsp: ENSP00000447353.1:p.Glu75Lys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.223G>A
  hgvsp: ENSP00000447349.1:p.Glu75Lys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.262G>A
  hgvsp: ENSP00000354461.3:p.Glu88Lys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.223G>A
  hgvsp: ENSP00000376426.4:p.Glu75Lys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.223G>A
  hgvsp: ENSP00000449994.1:p.Glu75Lys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.165G>A
  hgvsp: ENST00000450786.2:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.223G>A
  hgvsp: ENST00000549321.1:c.223G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4423
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu88Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

12-111801010-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801010
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801010
    reference: chr 12
allele count: 2
allele frequency: 1.760439405675657e-5
allele num: 113608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.222C>T
  hgvsp: ENST00000547838.2:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.222C>T
  hgvsp: ENST00000392658.5:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.222C>T
  hgvsp: ENST00000547710.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.222C>T
  hgvsp: ENST00000548163.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.261C>T
  hgvsp: ENST00000361483.3:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.222C>T
  hgvsp: ENST00000549321.1:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.164C>T
  hgvsp: ENSP00000390552.2:p.Pro55Leu
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35168
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro55Leu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

12-111801012-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801012
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801012
    reference: chr 12
allele count: 2
allele frequency: 1.75926251715281e-5
allele num: 113684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.162G>A
  hgvsp: ENST00000450786.2:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.220G>A
  hgvsp: ENSP00000447353.1:p.Ala74Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.220G>A
  hgvsp: ENSP00000449994.1:p.Ala74Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.259G>A
  hgvsp: ENSP00000354461.3:p.Ala87Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.220G>A
  hgvsp: ENSP00000447349.1:p.Ala74Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.220G>A
  hgvsp: ENSP00000447539.1:p.Ala74Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.220G>A
  hgvsp: ENSP00000376426.4:p.Ala74Thr
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16071
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala87Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

12-111801013-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801013
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801013
    reference: chr 12
allele count: 4
allele frequency: 3.514444366345681e-5
allele num: 113816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.161C>T
  hgvsp: ENSP00000390552.2:p.Pro54Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.219C>T
  hgvsp: ENST00000547710.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.219C>T
  hgvsp: ENST00000549321.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.219C>T
  hgvsp: ENST00000547838.2:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.219C>T
  hgvsp: ENST00000548163.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.219C>T
  hgvsp: ENST00000392658.5:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.258C>T
  hgvsp: ENST00000361483.3:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16150
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45910
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro54Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

12-111801024-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801024
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801024
    reference: chr 12
allele count: 1
allele frequency: 8.749059476106318e-6
allele num: 114298
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.247C>T
  hgvsp: ENST00000361483.3:c.247C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.208C>T
  hgvsp: ENST00000549321.1:c.208C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.208C>T
  hgvsp: ENST00000548163.1:c.208C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.208C>T
  hgvsp: ENST00000547838.2:c.208C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.150C>T
  hgvsp: ENST00000450786.2:c.150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.208C>T
  hgvsp: ENST00000547710.1:c.208C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.208C>T
  hgvsp: ENST00000392658.5:c.208C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45697
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu83Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP

12-111801031-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801031
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801031
    reference: chr 12
allele count: 3
allele frequency: 2.617435611083967e-5
allele num: 114616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.201T>C
  hgvsp: ENST00000549321.1:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.201T>C
  hgvsp: ENST00000547710.1:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.201T>C
  hgvsp: ENST00000548163.1:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.201T>C
  hgvsp: ENST00000547838.2:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.143T>C
  hgvsp: ENSP00000390552.2:p.Leu48Pro
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.201T>C
  hgvsp: ENST00000392658.5:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.240T>C
  hgvsp: ENST00000361483.3:c.240T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu48Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

12-111801037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801037
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801037
    reference: chr 12
allele count: 1
allele frequency: 8.713382012094175e-6
allele num: 114766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.195C>T
  hgvsp: ENST00000547710.1:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.195C>T
  hgvsp: ENST00000392658.5:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.195C>T
  hgvsp: ENST00000547838.2:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.234C>T
  hgvsp: ENST00000361483.3:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.195C>T
  hgvsp: ENST00000549321.1:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.195C>T
  hgvsp: ENST00000548163.1:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.137C>T
  hgvsp: ENSP00000390552.2:p.Ala46Val
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35347
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3457
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala46Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

12-111801043-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801043
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801043
    reference: chr 12
allele count: 2
allele frequency: 1.740159398600912e-5
allele num: 114932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.131G>A
  hgvsp: ENSP00000390552.2:p.Trp44Ter
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.189G>A
  hgvsp: ENST00000392658.5:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.189G>A
  hgvsp: ENST00000548163.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.228G>A
  hgvsp: ENST00000361483.3:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.189G>A
  hgvsp: ENST00000547838.2:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.189G>A
  hgvsp: ENST00000547710.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.189G>A
  hgvsp: ENST00000549321.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17142
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4644
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47090
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Trp44Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

12-111801054-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801054
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801054
    reference: chr 12
allele count: 2
allele frequency: 1.737891242766028e-5
allele num: 115082
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.217G>A
  hgvsp: ENSP00000354461.3:p.Val73Ile
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.120G>A
  hgvsp: ENST00000450786.2:c.120G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.178G>A
  hgvsp: ENSP00000376426.4:p.Val60Ile
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.178G>A
  hgvsp: ENSP00000447353.1:p.Val60Ile
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.178G>A
  hgvsp: ENSP00000447539.1:p.Val60Ile
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.178G>A
  hgvsp: ENSP00000447349.1:p.Val60Ile
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.178G>A
  hgvsp: ENSP00000449994.1:p.Val60Ile
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35268
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val73Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

12-111801055-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801055
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801055
    reference: chr 12
allele count: 20
allele frequency: 1.736412571627018e-4
allele num: 115180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.119C>T
  hgvsp: ENSP00000390552.2:p.Ala40Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.177C>T
  hgvsp: ENST00000392658.5:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.177C>T
  hgvsp: ENST00000547710.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.177C>T
  hgvsp: ENST00000548163.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.177C>T
  hgvsp: ENST00000549321.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.177C>T
  hgvsp: ENST00000547838.2:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.216C>T
  hgvsp: ENST00000361483.3:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17409
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35242
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala40Val
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/12-111801060-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801060
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801060
    reference: chr 12
allele count: 1
allele frequency: 8.674983083782986e-6
allele num: 115274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.172G>T
  hgvsp: ENSP00000449994.1:p.Val58Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.172G>T
  hgvsp: ENSP00000447353.1:p.Val58Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.172G>T
  hgvsp: ENSP00000376426.4:p.Val58Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.114G>T
  hgvsp: ENST00000450786.2:c.114G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.172G>T
  hgvsp: ENSP00000447349.1:p.Val58Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.172G>T
  hgvsp: ENSP00000447539.1:p.Val58Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.211G>T
  hgvsp: ENSP00000354461.3:p.Val71Leu
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17576
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4677
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val71Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

12-111801060-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801060
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801060
    reference: chr 12
allele count: 0
allele frequency: 0.0e0
allele num: 115274
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.211G>A
  hgvsp: ENSP00000354461.3:p.Val71Met
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.114G>A
  hgvsp: ENST00000450786.2:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.172G>A
  hgvsp: ENSP00000376426.4:p.Val58Met
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.172G>A
  hgvsp: ENSP00000449994.1:p.Val58Met
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.172G>A
  hgvsp: ENSP00000447539.1:p.Val58Met
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.172G>A
  hgvsp: ENSP00000447349.1:p.Val58Met
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.172G>A
  hgvsp: ENSP00000447353.1:p.Val58Met
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 35128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val71Met
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

12-111801061-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801061
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801061
    reference: chr 12
allele count: 47
allele frequency: 4.076676207823749e-4
allele num: 115290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.171C>T
  hgvsp: ENST00000548163.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.171C>T
  hgvsp: ENST00000547710.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.171C>T
  hgvsp: ENST00000549321.1:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.171C>T
  hgvsp: ENST00000547838.2:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.113C>T
  hgvsp: ENSP00000390552.2:p.Pro38Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.210C>T
  hgvsp: ENST00000361483.3:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.171C>T
  hgvsp: ENST00000392658.5:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 17643
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35131
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro38Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

12-111801064-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801064
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801064
    reference: chr 12
allele count: 1
allele frequency: 8.669267446900737e-6
allele num: 115350
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.207G>C
  hgvsp: ENSP00000354461.3:p.Glu69Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.168G>C
  hgvsp: ENSP00000376426.4:p.Glu56Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.168G>C
  hgvsp: ENSP00000447349.1:p.Glu56Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.168G>C
  hgvsp: ENSP00000447539.1:p.Glu56Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.110G>C
  hgvsp: ENSP00000390552.2:p.Ser37Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.168G>C
  hgvsp: ENSP00000447353.1:p.Glu56Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.168G>C
  hgvsp: ENSP00000449994.1:p.Glu56Asp
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu69Asp
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

12-111801066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801066
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801066
    reference: chr 12
allele count: 1
allele frequency: 8.676036786395974e-6
allele num: 115260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.166G>A
  hgvsp: ENSP00000447353.1:p.Glu56Lys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.166G>A
  hgvsp: ENSP00000447349.1:p.Glu56Lys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.108G>A
  hgvsp: ENST00000450786.2:c.108G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.205G>A
  hgvsp: ENSP00000354461.3:p.Glu69Lys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.166G>A
  hgvsp: ENSP00000376426.4:p.Glu56Lys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.166G>A
  hgvsp: ENSP00000447539.1:p.Glu56Lys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.166G>A
  hgvsp: ENSP00000449994.1:p.Glu56Lys
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu69Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/12-111801068-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801068
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801068
    reference: chr 12
allele count: 1
allele frequency: 8.680103466833325e-6
allele num: 115206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.164G>T
  hgvsp: ENSP00000447349.1:p.Arg55Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.164G>T
  hgvsp: ENSP00000447539.1:p.Arg55Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.106G>T
  hgvsp: ENSP00000390552.2:p.Val36Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.164G>T
  hgvsp: ENSP00000376426.4:p.Arg55Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.164G>T
  hgvsp: ENSP00000447353.1:p.Arg55Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.164G>T
  hgvsp: ENSP00000449994.1:p.Arg55Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.203G>T
  hgvsp: ENSP00000354461.3:p.Arg68Leu
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2969
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg68Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

12-111801068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801068
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801068
    reference: chr 12
allele count: 1
allele frequency: 8.680103466833325e-6
allele num: 115206
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.203G>A
  hgvsp: ENSP00000354461.3:p.Arg68His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.106G>A
  hgvsp: ENSP00000390552.2:p.Val36Met
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.164G>A
  hgvsp: ENSP00000447539.1:p.Arg55His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.164G>A
  hgvsp: ENSP00000447353.1:p.Arg55His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.164G>A
  hgvsp: ENSP00000376426.4:p.Arg55His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.164G>A
  hgvsp: ENSP00000447349.1:p.Arg55His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.164G>A
  hgvsp: ENSP00000449994.1:p.Arg55His
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46979
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4701
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg68His
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ

12-111801069-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801069
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801069
    reference: chr 12
allele count: 4
allele frequency: 3.469632045521572e-5
allele num: 115286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.105C>T
  hgvsp: ENST00000450786.2:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.163C>T
  hgvsp: ENSP00000447349.1:p.Arg55Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.163C>T
  hgvsp: ENSP00000447353.1:p.Arg55Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.163C>T
  hgvsp: ENSP00000449994.1:p.Arg55Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.163C>T
  hgvsp: ENSP00000376426.4:p.Arg55Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.163C>T
  hgvsp: ENSP00000447539.1:p.Arg55Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.202C>T
  hgvsp: ENSP00000354461.3:p.Arg68Cys
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4712
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg68Cys
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/12-111801071-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801071
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801071
    reference: chr 12
allele count: 1
allele frequency: 8.670169415110372e-6
allele num: 115338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.161G>T
  hgvsp: ENSP00000376426.4:p.Ser54Ile
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.161G>T
  hgvsp: ENSP00000447353.1:p.Ser54Ile
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.161G>T
  hgvsp: ENSP00000447539.1:p.Ser54Ile
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.161G>T
  hgvsp: ENSP00000447349.1:p.Ser54Ile
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.200G>T
  hgvsp: ENSP00000354461.3:p.Ser67Ile
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.161G>T
  hgvsp: ENSP00000449994.1:p.Ser54Ile
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.103G>T
  hgvsp: ENSP00000390552.2:p.Ala35Ser
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17749
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4725
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser67Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

12-111801078-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801078
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801078
    reference: chr 12
allele count: 1
allele frequency: 8.665210911233579e-6
allele num: 115404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.154G>A
  hgvsp: ENSP00000447353.1:p.Ala52Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.96G>A
  hgvsp: ENST00000450786.2:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.154G>A
  hgvsp: ENSP00000447349.1:p.Ala52Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.193G>A
  hgvsp: ENSP00000354461.3:p.Ala65Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.154G>A
  hgvsp: ENSP00000447539.1:p.Ala52Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.154G>A
  hgvsp: ENSP00000449994.1:p.Ala52Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.154G>A
  hgvsp: ENSP00000376426.4:p.Ala52Thr
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4727
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47740
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala65Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

12-111801079-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801079
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801079
    reference: chr 12
allele count: 1
allele frequency: 8.664159836420662e-6
allele num: 115418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.153C>T
  hgvsp: ENST00000548163.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.153C>T
  hgvsp: ENST00000392658.5:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.153C>T
  hgvsp: ENST00000549321.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.192C>T
  hgvsp: ENST00000361483.3:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.153C>T
  hgvsp: ENST00000547710.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.95C>T
  hgvsp: ENSP00000390552.2:p.Thr32Met
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.153C>T
  hgvsp: ENST00000547838.2:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3043
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47725
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr32Met
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

12-111801085-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801085
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801085
    reference: chr 12
allele count: 2
allele frequency: 1.731002250302925e-5
allele num: 115540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.89C>T
  hgvsp: ENSP00000390552.2:p.Ser30Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.186C>T
  hgvsp: ENST00000361483.3:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.147C>T
  hgvsp: ENST00000392658.5:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.147C>T
  hgvsp: ENST00000547710.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.147C>T
  hgvsp: ENST00000547838.2:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.147C>T
  hgvsp: ENST00000549321.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.147C>T
  hgvsp: ENST00000548163.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17942
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4767
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser30Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-111801088-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801088
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801088
    reference: chr 12
allele count: 1
allele frequency: 8.64707815229234e-6
allele num: 115646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.144C>G
  hgvsp: ENSP00000447349.1:p.Tyr48Ter
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.144C>G
  hgvsp: ENSP00000449994.1:p.Tyr48Ter
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.183C>G
  hgvsp: ENSP00000354461.3:p.Tyr61Ter
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.144C>G
  hgvsp: ENSP00000447539.1:p.Tyr48Ter
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.144C>G
  hgvsp: ENSP00000376426.4:p.Tyr48Ter
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.144C>G
  hgvsp: ENSP00000447353.1:p.Tyr48Ter
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.86C>G
  hgvsp: ENSP00000390552.2:p.Thr29Ser
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48698
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr61Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

12-111801094-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801094
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801094
    reference: chr 12
allele count: 1
allele frequency: 8.643490587238751e-6
allele num: 115694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.138C>T
  hgvsp: ENST00000549321.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.177C>T
  hgvsp: ENST00000361483.3:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.80C>T
  hgvsp: ENSP00000390552.2:p.Ser27Phe
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.138C>T
  hgvsp: ENST00000392658.5:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.138C>T
  hgvsp: ENST00000548163.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.138C>T
  hgvsp: ENST00000547838.2:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.138C>T
  hgvsp: ENST00000547710.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4804
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48708
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3111
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser27Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

12-111801096-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801096
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801096
    reference: chr 12
allele count: 1
allele frequency: 8.651267410675664e-6
allele num: 115590
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.175C>G
  hgvsp: ENSP00000354461.3:p.Leu59Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.78C>G
  hgvsp: ENSP00000390552.2:p.Cys26Trp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.136C>G
  hgvsp: ENSP00000447353.1:p.Leu46Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.136C>G
  hgvsp: ENSP00000376426.4:p.Leu46Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.136C>G
  hgvsp: ENSP00000447349.1:p.Leu46Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.136C>G
  hgvsp: ENSP00000447539.1:p.Leu46Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.136C>G
  hgvsp: ENSP00000449994.1:p.Leu46Val
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48047
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu59Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

12-111801100-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801100
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801100
    reference: chr 12
allele count: 2
allele frequency: 1.72956518731191e-5
allele num: 115636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.132C>T
  hgvsp: ENST00000547838.2:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.74C>T
  hgvsp: ENSP00000390552.2:p.Thr25Ile
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.132C>T
  hgvsp: ENST00000547710.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.132C>T
  hgvsp: ENST00000549321.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.132C>T
  hgvsp: ENST00000548163.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.132C>T
  hgvsp: ENST00000392658.5:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.171C>T
  hgvsp: ENST00000361483.3:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18147
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr25Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS

http://identifiers.org/exac.variant/12-111801103-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801103
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801103
    reference: chr 12
allele count: 1
allele frequency: 8.653812869950501e-6
allele num: 115556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.129G>T
  hgvsp: ENST00000548163.1:c.129G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.71G>T
  hgvsp: ENSP00000390552.2:p.Gly24Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.129G>T
  hgvsp: ENST00000547710.1:c.129G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.129G>T
  hgvsp: ENST00000547838.2:c.129G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.129G>T
  hgvsp: ENST00000392658.5:c.129G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.168G>T
  hgvsp: ENST00000361483.3:c.168G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.129G>T
  hgvsp: ENST00000549321.1:c.129G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48031
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly24Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

12-111801103-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801103
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801103
    reference: chr 12
allele count: 1
allele frequency: 8.653812869950501e-6
allele num: 115556
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.168G>A
  hgvsp: ENST00000361483.3:c.168G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.129G>A
  hgvsp: ENST00000547710.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.129G>A
  hgvsp: ENST00000547838.2:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.129G>A
  hgvsp: ENST00000549321.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.71G>A
  hgvsp: ENSP00000390552.2:p.Gly24Glu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.129G>A
  hgvsp: ENST00000548163.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.129G>A
  hgvsp: ENST00000392658.5:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34909
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48031
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly24Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

12-111801105-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801105
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801105
    reference: chr 12
allele count: 2
allele frequency: 1.731991617160573e-5
allele num: 115474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.127G>A
  hgvsp: ENSP00000447353.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.127G>A
  hgvsp: ENSP00000447539.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.127G>A
  hgvsp: ENSP00000376426.4:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.166G>A
  hgvsp: ENSP00000354461.3:p.Gly56Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.127G>A
  hgvsp: ENSP00000449994.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.127G>A
  hgvsp: ENSP00000447349.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.69G>A
  hgvsp: ENST00000450786.2:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34642
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly56Arg
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum

12-111801106-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801106
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801106
    reference: chr 12
allele count: 4
allele frequency: 3.462543931026125e-5
allele num: 115522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.68C>T
  hgvsp: ENSP00000390552.2:p.Ala23Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.126C>T
  hgvsp: ENST00000547710.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.126C>T
  hgvsp: ENST00000548163.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.165C>T
  hgvsp: ENST00000361483.3:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.126C>T
  hgvsp: ENST00000547838.2:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.126C>T
  hgvsp: ENST00000549321.1:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.126C>T
  hgvsp: ENST00000392658.5:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala23Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

12-111801107-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801107
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801107
    reference: chr 12
allele count: 1
allele frequency: 8.65516107254756e-6
allele num: 115538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.125G>A
  hgvsp: ENSP00000447353.1:p.Arg42His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.164G>A
  hgvsp: ENSP00000354461.3:p.Arg55His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.125G>A
  hgvsp: ENSP00000376426.4:p.Arg42His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.125G>A
  hgvsp: ENSP00000449994.1:p.Arg42His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.67G>A
  hgvsp: ENSP00000390552.2:p.Ala23Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.125G>A
  hgvsp: ENSP00000447539.1:p.Arg42His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.125G>A
  hgvsp: ENSP00000447349.1:p.Arg42His
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg55His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

12-111801109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801109
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801109
    reference: chr 12
allele count: 1
allele frequency: 8.669568082118148e-6
allele num: 115346
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.162G>A
  hgvsp: ENST00000361483.3:c.162G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.123G>A
  hgvsp: ENST00000549321.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.123G>A
  hgvsp: ENST00000547710.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.123G>A
  hgvsp: ENST00000392658.5:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.123G>A
  hgvsp: ENST00000548163.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.65G>A
  hgvsp: ENSP00000390552.2:p.Cys22Tyr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.123G>A
  hgvsp: ENST00000547838.2:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46705
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Cys22Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

12-111801111-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801111
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801111
    reference: chr 12
allele count: 1
allele frequency: 8.668666239012466e-6
allele num: 115358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.121C>A
  hgvsp: ENSP00000449994.1:p.Leu41Met
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.121C>A
  hgvsp: ENSP00000376426.4:p.Leu41Met
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.121C>A
  hgvsp: ENSP00000447349.1:p.Leu41Met
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.160C>A
  hgvsp: ENSP00000354461.3:p.Leu54Met
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.63C>A
  hgvsp: ENSP00000390552.2:p.Cys21Ter
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.121C>A
  hgvsp: ENSP00000447353.1:p.Leu41Met
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.121C>A
  hgvsp: ENSP00000447539.1:p.Leu41Met
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4557
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys21Ter
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

12-111801115-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801115
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801115
    reference: chr 12
allele count: 1
allele frequency: 8.669868738187303e-6
allele num: 115342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.117C>T
  hgvsp: ENST00000547838.2:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.117C>T
  hgvsp: ENST00000547710.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.59C>T
  hgvsp: ENSP00000390552.2:p.Ser20Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.117C>T
  hgvsp: ENST00000392658.5:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.117C>T
  hgvsp: ENST00000548163.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.156C>T
  hgvsp: ENST00000361483.3:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.117C>T
  hgvsp: ENST00000549321.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4543
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47410
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser20Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/12-111801119-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801119
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801119
    reference: chr 12
allele count: 1
allele frequency: 8.680555555555556e-6
allele num: 115200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.55G>T
  hgvsp: ENSP00000390552.2:p.Gly19Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.113G>T
  hgvsp: ENSP00000376426.4:p.Trp38Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.113G>T
  hgvsp: ENSP00000449994.1:p.Trp38Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.152G>T
  hgvsp: ENSP00000354461.3:p.Trp51Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.113G>T
  hgvsp: ENSP00000447539.1:p.Trp38Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.113G>T
  hgvsp: ENSP00000447349.1:p.Trp38Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.113G>T
  hgvsp: ENSP00000447353.1:p.Trp38Leu
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47008
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Trp51Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

12-111801119-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801119
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801119
    reference: chr 12
allele count: 2
allele frequency: 1.736111111111111e-5
allele num: 115200
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.152G>A
  hgvsp: ENSP00000354461.3:p.Trp51Ter
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.113G>A
  hgvsp: ENSP00000447539.1:p.Trp38Ter
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.113G>A
  hgvsp: ENSP00000447349.1:p.Trp38Ter
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.113G>A
  hgvsp: ENSP00000449994.1:p.Trp38Ter
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.113G>A
  hgvsp: ENSP00000447353.1:p.Trp38Ter
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.55G>A
  hgvsp: ENSP00000390552.2:p.Gly19Ser
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.113G>A
  hgvsp: ENSP00000376426.4:p.Trp38Ter
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47008
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp51Ter
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-111801123-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801123
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801123
    reference: chr 12
allele count: 1
allele frequency: 8.694140149539211e-6
allele num: 115020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.109C>T
  hgvsp: ENSP00000449994.1:p.Arg37Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.109C>T
  hgvsp: ENSP00000447349.1:p.Arg37Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.148C>T
  hgvsp: ENSP00000354461.3:p.Arg50Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.51C>T
  hgvsp: ENST00000450786.2:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.109C>T
  hgvsp: ENSP00000447539.1:p.Arg37Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.109C>T
  hgvsp: ENSP00000447353.1:p.Arg37Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.109C>T
  hgvsp: ENSP00000376426.4:p.Arg37Cys
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg50Cys
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

12-111801125-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801125
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801125
    reference: chr 12
allele count: 1
allele frequency: 8.702462796971543e-6
allele num: 114910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.107G>A
  hgvsp: ENSP00000449994.1:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.49G>A
  hgvsp: ENSP00000390552.2:p.Gly17Ser
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.146G>A
  hgvsp: ENSP00000354461.3:p.Arg49Gln
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.107G>A
  hgvsp: ENSP00000447353.1:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.107G>A
  hgvsp: ENSP00000447349.1:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.107G>A
  hgvsp: ENSP00000447539.1:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.107G>A
  hgvsp: ENSP00000376426.4:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3617
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg49Gln
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ

12-111801126-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801126
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801126
    reference: chr 12
allele count: 2
allele frequency: 1.739342180787226e-5
allele num: 114986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.106C>T
  hgvsp: ENSP00000447353.1:p.Arg36Trp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.106C>T
  hgvsp: ENSP00000447349.1:p.Arg36Trp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.106C>T
  hgvsp: ENSP00000449994.1:p.Arg36Trp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.145C>T
  hgvsp: ENSP00000354461.3:p.Arg49Trp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.48C>T
  hgvsp: ENST00000450786.2:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.106C>T
  hgvsp: ENSP00000447539.1:p.Arg36Trp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.106C>T
  hgvsp: ENSP00000376426.4:p.Arg36Trp
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46444
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg49Trp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

12-111801129-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801129
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801129
    reference: chr 12
allele count: 2
allele frequency: 1.744561330053558e-5
allele num: 114642
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.142C>T
  hgvsp: ENSP00000354461.3:p.His48Tyr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.103C>T
  hgvsp: ENSP00000449994.1:p.His35Tyr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.103C>T
  hgvsp: ENSP00000447539.1:p.His35Tyr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.103C>T
  hgvsp: ENSP00000447353.1:p.His35Tyr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.103C>T
  hgvsp: ENSP00000376426.4:p.His35Tyr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.103C>T
  hgvsp: ENSP00000447349.1:p.His35Tyr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.45C>T
  hgvsp: ENST00000450786.2:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4286
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His48Tyr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

12-111801136-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801136
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801136
    reference: chr 12
allele count: 1
allele frequency: 8.751662815935028e-6
allele num: 114264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.96G>A
  hgvsp: ENST00000547838.2:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.96G>A
  hgvsp: ENST00000548163.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.38G>A
  hgvsp: ENSP00000390552.2:p.Arg13Gln
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.96G>A
  hgvsp: ENST00000392658.5:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.96G>A
  hgvsp: ENST00000549321.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.96G>A
  hgvsp: ENST00000547710.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.135G>A
  hgvsp: ENST00000361483.3:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg13Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-111801137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801137
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801137
    reference: chr 12
allele count: 2
allele frequency: 1.749811895221264e-5
allele num: 114298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.95C>T
  hgvsp: ENSP00000447539.1:p.Ala32Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.95C>T
  hgvsp: ENSP00000447349.1:p.Ala32Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.134C>T
  hgvsp: ENSP00000354461.3:p.Ala45Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.95C>T
  hgvsp: ENSP00000447353.1:p.Ala32Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.37C>T
  hgvsp: ENSP00000390552.2:p.Arg13Trp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.95C>T
  hgvsp: ENSP00000449994.1:p.Ala32Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.95C>T
  hgvsp: ENSP00000376426.4:p.Ala32Val
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3827
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala45Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

12-111801138-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801138
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801138
    reference: chr 12
allele count: 280
allele frequency: 2.450808766893075e-3
allele num: 114248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.94G>A
  hgvsp: ENSP00000447353.1:p.Ala32Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.94G>A
  hgvsp: ENSP00000449994.1:p.Ala32Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.94G>A
  hgvsp: ENSP00000447349.1:p.Ala32Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.133G>A
  hgvsp: ENSP00000354461.3:p.Ala45Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.94G>A
  hgvsp: ENSP00000447539.1:p.Ala32Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.36G>A
  hgvsp: ENST00000450786.2:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.94G>A
  hgvsp: ENSP00000376426.4:p.Ala32Thr
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 33270
  bin: 2.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 16816
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 3.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 9.75e1
  variant carriers: 277
genotype quality: GenotypeQuality
  all individuals: 3806
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4057
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 5.75e1
  variant carriers: 2
hgvs: p.Ala45Thr
num of homozygotes: 4
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

12-111801143-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801143
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801143
    reference: chr 12
allele count: 14
allele frequency: 1.227768618234118e-4
allele num: 114028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.89G>A
  hgvsp: ENSP00000449994.1:p.Arg30Gln
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.31G>A
  hgvsp: ENSP00000390552.2:p.Gly11Ser
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.89G>A
  hgvsp: ENSP00000376426.4:p.Arg30Gln
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.89G>A
  hgvsp: ENSP00000447349.1:p.Arg30Gln
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.89G>A
  hgvsp: ENSP00000447539.1:p.Arg30Gln
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.128G>A
  hgvsp: ENSP00000354461.3:p.Arg43Gln
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.89G>A
  hgvsp: ENSP00000447353.1:p.Arg30Gln
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16810
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33481
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4015
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg43Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum

12-111801144-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801144
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801144
    reference: chr 12
allele count: 2
allele frequency: 1.756049590840445e-5
allele num: 113892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.88C>T
  hgvsp: ENSP00000447349.1:p.Arg30Trp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.127C>T
  hgvsp: ENSP00000354461.3:p.Arg43Trp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.88C>T
  hgvsp: ENSP00000447353.1:p.Arg30Trp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.88C>T
  hgvsp: ENSP00000447539.1:p.Arg30Trp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.30C>T
  hgvsp: ENST00000450786.2:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.88C>T
  hgvsp: ENSP00000449994.1:p.Arg30Trp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.88C>T
  hgvsp: ENSP00000376426.4:p.Arg30Trp
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4068
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg43Trp
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

12-111801152-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801152
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801152
    reference: chr 12
allele count: 1
allele frequency: 8.790436005625879e-6
allele num: 113760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.80A>G
  hgvsp: ENSP00000447349.1:p.Lys27Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.80A>G
  hgvsp: ENSP00000376426.4:p.Lys27Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.80A>G
  hgvsp: ENSP00000447539.1:p.Lys27Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.80A>G
  hgvsp: ENSP00000449994.1:p.Lys27Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.22A>G
  hgvsp: ENSP00000390552.2:p.Arg8Gly
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.119A>G
  hgvsp: ENSP00000354461.3:p.Lys40Arg
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.80A>G
  hgvsp: ENSP00000447353.1:p.Lys27Arg
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33329
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys40Arg
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD

12-111801157-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801157
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801157
    reference: chr 12
allele count: 27
allele frequency: 2.377681496354222e-4
allele num: 113556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.75C>T
  hgvsp: ENST00000548163.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.17C>T
  hgvsp: ENSP00000390552.2:p.Thr6Ile
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.75C>T
  hgvsp: ENST00000392658.5:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.75C>T
  hgvsp: ENST00000547838.2:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.75C>T
  hgvsp: ENST00000547710.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.75C>T
  hgvsp: ENST00000549321.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.114C>T
  hgvsp: ENST00000361483.3:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16493
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33462
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr6Ile
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

12-111801159-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801159
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801159
    reference: chr 12
allele count: 1
allele frequency: 8.810417437578192e-6
allele num: 113502
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.73T>C
  hgvsp: ENSP00000449994.1:p.Tyr25His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.73T>C
  hgvsp: ENSP00000447349.1:p.Tyr25His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.73T>C
  hgvsp: ENSP00000376426.4:p.Tyr25His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.73T>C
  hgvsp: ENSP00000447539.1:p.Tyr25His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.15T>C
  hgvsp: ENST00000450786.2:c.15T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.112T>C
  hgvsp: ENSP00000354461.3:p.Tyr38His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.73T>C
  hgvsp: ENSP00000447353.1:p.Tyr25His
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33526
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44354
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Tyr38His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

12-111801160-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801160
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801160
    reference: chr 12
allele count: 3
allele frequency: 2.644057041123901e-5
allele num: 113462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.72G>A
  hgvsp: ENST00000549321.1:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.14G>A
  hgvsp: ENSP00000390552.2:p.Cys5Tyr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.72G>A
  hgvsp: ENST00000392658.5:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.111G>A
  hgvsp: ENST00000361483.3:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.72G>A
  hgvsp: ENST00000547838.2:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.72G>A
  hgvsp: ENST00000547710.1:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.72G>A
  hgvsp: ENST00000548163.1:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16437
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4575
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys5Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

12-111801162-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801162
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801162
    reference: chr 12
allele count: 1
allele frequency: 8.817409092512257e-6
allele num: 113412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.12C>T
  hgvsp: ENST00000450786.2:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.70C>T
  hgvsp: ENST00000549321.1:c.70C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.70C>T
  hgvsp: ENST00000547710.1:c.70C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.70C>T
  hgvsp: ENST00000392658.5:c.70C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.70C>T
  hgvsp: ENST00000547838.2:c.70C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.70C>T
  hgvsp: ENST00000548163.1:c.70C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.109C>T
  hgvsp: ENST00000361483.3:c.109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16412
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4035
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu37Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

12-111801166-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801166
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801166
    reference: chr 12
allele count: 1
allele frequency: 8.827527762574813e-6
allele num: 113282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.66C>T
  hgvsp: ENST00000548163.1:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.8C>T
  hgvsp: ENSP00000390552.2:p.Ala3Val
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.66C>T
  hgvsp: ENST00000549321.1:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.66C>T
  hgvsp: ENST00000547838.2:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.66C>T
  hgvsp: ENST00000547710.1:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.66C>T
  hgvsp: ENST00000392658.5:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.105C>T
  hgvsp: ENST00000361483.3:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16453
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4075
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala3Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

12-111801167-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801167
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801167
    reference: chr 12
allele count: 2
allele frequency: 1.768721921539496e-5
allele num: 113076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.7G>A
  hgvsp: ENSP00000390552.2:p.Ala3Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.65G>A
  hgvsp: ENSP00000376426.4:p.Gly22Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.104G>A
  hgvsp: ENSP00000354461.3:p.Gly35Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.65G>A
  hgvsp: ENSP00000447349.1:p.Gly22Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.65G>A
  hgvsp: ENSP00000447539.1:p.Gly22Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.65G>A
  hgvsp: ENSP00000447353.1:p.Gly22Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.65G>A
  hgvsp: ENSP00000449994.1:p.Gly22Asp
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33504
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly35Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-111801170-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801170
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801170
    reference: chr 12
allele count: 1
allele frequency: 8.844235327413593e-6
allele num: 113068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.62C>A
  hgvsp: ENSP00000447539.1:p.Ala21Glu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.62C>A
  hgvsp: ENSP00000449994.1:p.Ala21Glu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.62C>A
  hgvsp: ENSP00000447349.1:p.Ala21Glu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.4C>A
  hgvsp: ENSP00000390552.2:p.Gln2Lys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.62C>A
  hgvsp: ENSP00000447353.1:p.Ala21Glu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.101C>A
  hgvsp: ENSP00000354461.3:p.Ala34Glu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.62C>A
  hgvsp: ENSP00000376426.4:p.Ala21Glu
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4084
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala34Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

12-111801172-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801172
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801172
    reference: chr 12
allele count: 61
allele frequency: 5.404064565282872e-4
allele num: 112878
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.60T>C
  hgvsp: ENST00000549321.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.60T>C
  hgvsp: ENST00000547710.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.60T>C
  hgvsp: ENST00000547838.2:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.2T>C
  hgvsp: ENSP00000390552.2:p.Met1?
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.99T>C
  hgvsp: ENST00000361483.3:c.99T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.60T>C
  hgvsp: ENST00000548163.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.60T>C
  hgvsp: ENST00000392658.5:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16542
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33431
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 9.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

12-111801181-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801181
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801181
    reference: chr 12
allele count: 2
allele frequency: 1.786288449858883e-5
allele num: 111964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.51G>A
  hgvsp: ENST00000548163.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.51G>A
  hgvsp: ENST00000392658.5:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.51G>A
  hgvsp: ENST00000547710.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.90G>A
  hgvsp: ENST00000361483.3:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.51G>A
  hgvsp: ENST00000549321.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.51G>A
  hgvsp: ENST00000547838.2:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.-8G>A
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16369
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43547
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3985
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro30Pro
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

12-111801182-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801182
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801182
    reference: chr 12
allele count: 1
allele frequency: 8.935272883233854e-6
allele num: 111916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.50C>T
  hgvsp: ENSP00000447539.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.50C>T
  hgvsp: ENSP00000449994.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.-9C>T
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.89C>T
  hgvsp: ENSP00000354461.3:p.Pro30Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.50C>T
  hgvsp: ENSP00000447353.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.50C>T
  hgvsp: ENSP00000447349.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.50C>T
  hgvsp: ENSP00000376426.4:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5239
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3990
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro30Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

12-111801187-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801187
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801187
    reference: chr 12
allele count: 3
allele frequency: 2.691790040376851e-5
allele num: 111450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.45C>T
  hgvsp: ENST00000392658.5:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.45C>T
  hgvsp: ENST00000549321.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.84C>T
  hgvsp: ENST00000361483.3:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.45C>T
  hgvsp: ENST00000547710.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.45C>T
  hgvsp: ENST00000547838.2:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.45C>T
  hgvsp: ENST00000548163.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.-14C>T
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5467
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp28Asp
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

12-111801191-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801191
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801191
    reference: chr 12
allele count: 1
allele frequency: 8.993291004910338e-6
allele num: 111194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.41G>C
  hgvsp: ENSP00000376426.4:p.Cys14Ser
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.41G>C
  hgvsp: ENSP00000449994.1:p.Cys14Ser
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.-18G>C
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.80G>C
  hgvsp: ENSP00000354461.3:p.Cys27Ser
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.41G>C
  hgvsp: ENSP00000447353.1:p.Cys14Ser
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.41G>C
  hgvsp: ENSP00000447349.1:p.Cys14Ser
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.41G>C
  hgvsp: ENSP00000447539.1:p.Cys14Ser
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3954
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5684
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys27Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

12-111801198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801198
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801198
    reference: chr 12
allele count: 1
allele frequency: 9.058299213739628e-6
allele num: 110396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.34G>A
  hgvsp: ENSP00000449994.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.34G>A
  hgvsp: ENSP00000447353.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.73G>A
  hgvsp: ENSP00000354461.3:p.Ala25Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.34G>A
  hgvsp: ENSP00000376426.4:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.34G>A
  hgvsp: ENSP00000447539.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.34G>A
  hgvsp: ENSP00000447349.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.-25G>A
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43910
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala25Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

12-111801199-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801199
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801199
    reference: chr 12
allele count: 4
allele frequency: 3.621417060495772e-5
allele num: 110454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.33C>T
  hgvsp: ENST00000547710.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.33C>T
  hgvsp: ENST00000549321.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.33C>T
  hgvsp: ENST00000392658.5:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.72C>T
  hgvsp: ENST00000361483.3:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.33C>T
  hgvsp: ENST00000547838.2:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.-26C>T
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.33C>T
  hgvsp: ENST00000548163.1:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3821
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44338
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Tyr24Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

12-111801206-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801206
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801206
    reference: chr 12
allele count: 1
allele frequency: 9.185941834616303e-6
allele num: 108862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.26C>A
  hgvsp: ENSP00000447353.1:p.Ala9Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.26C>A
  hgvsp: ENSP00000449994.1:p.Ala9Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.26C>A
  hgvsp: ENSP00000447349.1:p.Ala9Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.65C>A
  hgvsp: ENSP00000354461.3:p.Ala22Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.26C>A
  hgvsp: ENSP00000376426.4:p.Ala9Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.26C>A
  hgvsp: ENSP00000447539.1:p.Ala9Asp
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.-33C>A
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3665
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41826
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala22Asp
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/12-111801207-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801207
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801207
    reference: chr 12
allele count: 8
allele frequency: 7.356186552890981e-5
allele num: 108752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.25G>T
  hgvsp: ENSP00000447349.1:p.Ala9Ser
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.25G>T
  hgvsp: ENSP00000449994.1:p.Ala9Ser
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.64G>T
  hgvsp: ENSP00000354461.3:p.Ala22Ser
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.25G>T
  hgvsp: ENSP00000447539.1:p.Ala9Ser
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.25G>T
  hgvsp: ENSP00000376426.4:p.Ala9Ser
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.25G>T
  hgvsp: ENSP00000447353.1:p.Ala9Ser
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.-34G>T
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16001
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31093
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala22Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

12-111801215-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801215
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801215
    reference: chr 12
allele count: 1
allele frequency: 9.357688276688127e-6
allele num: 106864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.17G>A
  hgvsp: ENSP00000447539.1:p.Arg6His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.-42G>A
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.17G>A
  hgvsp: ENSP00000449994.1:p.Arg6His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.17G>A
  hgvsp: ENSP00000447353.1:p.Arg6His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.56G>A
  hgvsp: ENSP00000354461.3:p.Arg19His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.17G>A
  hgvsp: ENSP00000376426.4:p.Arg6His
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.17G>A
  hgvsp: ENSP00000447349.1:p.Arg6His
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15260
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8459
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg19His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

12-111801216-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 111801216
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 111801216
    reference: chr 12
allele count: 1
allele frequency: 9.397613006296401e-6
allele num: 106410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447349
  ensembl transcript: ENST00000547710
  gene symbol: FAM109A
  hgvsc: ENST00000547710.1:c.16C>T
  hgvsp: ENSP00000447349.1:p.Arg6Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447539
  ensembl transcript: ENST00000549321
  gene symbol: FAM109A
  hgvsc: ENST00000549321.1:c.16C>T
  hgvsp: ENSP00000447539.1:p.Arg6Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000376426
  ensembl transcript: ENST00000392658
  gene symbol: FAM109A
  hgvsc: ENST00000392658.5:c.16C>T
  hgvsp: ENSP00000376426.4:p.Arg6Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000447353
  ensembl transcript: ENST00000547838
  gene symbol: FAM109A
  hgvsc: ENST00000547838.2:c.16C>T
  hgvsp: ENSP00000447353.1:p.Arg6Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000449994
  ensembl transcript: ENST00000548163
  gene symbol: FAM109A
  hgvsc: ENST00000548163.1:c.16C>T
  hgvsp: ENSP00000449994.1:p.Arg6Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000354461
  ensembl transcript: ENST00000361483
  gene symbol: FAM109A
  hgvsc: ENST00000361483.3:c.55C>T
  hgvsp: ENSP00000354461.3:p.Arg19Cys
  variant of: http://identifiers.org/hgnc/26509
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198324
  ensembl protein: ENSP00000390552
  ensembl transcript: ENST00000450786
  gene symbol: FAM109A
  hgvsc: ENST00000450786.2:c.-43C>T
  variant of: http://identifiers.org/hgnc/26509
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38857
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg19Cys
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 445
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4337
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4371
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5422
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.049773755656108e-5
allele num: 11050
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.116e0

VQSLOD
type: SiteQuality
SIO_000300: -1.476e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.237e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.3168e6

QD
type: SiteQuality
SIO_000300: 2.812e1

GenotypeQuality
all individuals: 159
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.63377336295909e-5
allele num: 61208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.919e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.231e0

VQSLOD
type: SiteQuality
SIO_000300: -2.631e0

FS
type: SiteQuality
SIO_000300: 2.783e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.27e-1

DP
type: SiteQuality
SIO_000300: 1.319188e6

QD
type: SiteQuality
SIO_000300: 2.898e1

GenotypeQuality
all individuals: 4304
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4295
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.265732667123869e-5
allele num: 61242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11052
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.856665428889714e-4
allele num: 16158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.144164759725401e-4
allele num: 8740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.095e1

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

FS
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.323064e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.61e-1

GenotypeQuality
all individuals: 29
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4185
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 367
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.013881377321075e-5
allele num: 11094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5476
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

FS
type: SiteQuality
SIO_000300: 3.611e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.457e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.445e0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e0

MQ
type: SiteQuality
SIO_000300: 5.862e1

DP
type: SiteQuality
SIO_000300: 1.328571e6

GenotypeQuality
all individuals: 419
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 715
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4392
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45527
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.622586402725945e-5
allele num: 61630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.206854936036688e-4
allele num: 8286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11098
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.178942165101334e-5
allele num: 16184
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.76e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 1.330657e6

FS
type: SiteQuality
SIO_000300: 1.791e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

QD
type: SiteQuality
SIO_000300: 1.084e1

GenotypeQuality
all individuals: 193
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 136
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5488
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.11333778668448e-4
allele num: 8982
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.19e0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.703e-1

QD
type: SiteQuality
SIO_000300: 1.057e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.098e0

DP
type: SiteQuality
SIO_000300: 1.332391e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.16e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.845743821676627e-5
allele num: 61910
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5518
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.05e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.210000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.336857e6

QD
type: SiteQuality
SIO_000300: 1.288e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.608958681941048e-5
allele num: 62152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5542
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.431e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.338948e6

MQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

QD
type: SiteQuality
SIO_000300: 1.499e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607406931138687e-5
allele num: 62212
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.228501228501228e-3
allele num: 814
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

DP
type: SiteQuality
SIO_000300: 1.341468e6

FS
type: SiteQuality
SIO_000300: 3.055e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
type: SiteQuality
SIO_000300: 1.056e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.85e-1

GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 25
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.213780691605605e-5
allele num: 62232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5554
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.201e1

FS
type: SiteQuality
SIO_000300: 2.628e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

DP
type: SiteQuality
SIO_000300: 1.342441e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 14
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.211716341212744e-5
allele num: 62272
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

DP
type: SiteQuality
SIO_000300: 1.343692e6

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.074e0

FS
type: SiteQuality
SIO_000300: 3.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.04e-1

QD
type: SiteQuality
SIO_000300: 1.223e1

MQ
type: SiteQuality
SIO_000300: 5.924e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.811239054431151e-5
allele num: 62354
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African
type: Population
allele count: 1
allele frequency: 1.081081081081081e-4
allele num: 9250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5552
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.972e0

QD
type: SiteQuality
SIO_000300: 1.358e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.166e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11214
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5608
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.597954618088846e-5
allele num: 62580
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8402
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African
type: Population
allele count: 0
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Other
type: Population
allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.26e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.029e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.351657e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11230
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 3
allele frequency: 3.186743148502231e-4
allele num: 9414
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62752
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62834
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South Asian
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allele count: 1
allele frequency: 6.113964294448521e-5
allele num: 16356
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5650
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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East Asian
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allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

African
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allele num: 9446
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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SIO_000300: -1.139e0

QD
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BaseQRankSum
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SIO_000300: -2.985e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3404
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 582
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.113271344040575e-4
allele num: 9464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.336e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 7.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

DP
type: SiteQuality
SIO_000300: 1.364355e6

QD
type: SiteQuality
SIO_000300: 1.137e1

GenotypeQuality
all individuals: 3227
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47032
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4679
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.176317377632373e-5
allele num: 62966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.939e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 1.334e1

DP
type: SiteQuality
SIO_000300: 1.367671e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

FS
type: SiteQuality
SIO_000300: 2.279e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.93e-1

GenotypeQuality
all individuals: 3264
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47331
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4687
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.051303616484441e-4
allele num: 9512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.751927119831815e-4
allele num: 5708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.903976136832418e-4
allele num: 63026
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.210653753026634e-3
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.431052818149592e-4
allele num: 11284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

QD
type: SiteQuality
SIO_000300: 1.1e1

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

DP
type: SiteQuality
SIO_000300: 1.369436e6

FS
type: SiteQuality
SIO_000300: 1.731e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
all individuals: 536
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47335
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.098304671301378e-5
allele num: 16398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.95e0

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.113e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.55e-1

DP
type: SiteQuality
SIO_000300: 1.370689e6

GenotypeQuality
all individuals: 12
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47335
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e-1

FS
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.113e1

DP
type: SiteQuality
SIO_000300: 1.370689e6

GenotypeQuality
all individuals: 4687
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3228
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47710
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 29
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 23
allele frequency: 2.411407003564688e-3
allele num: 9538
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.656277669559058e-4
allele num: 11294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.210653753026634e-3
allele num: 826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.219052147725472e-4
allele num: 63090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.048218029350105e-3
allele num: 5724
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.372704e6

FS
type: SiteQuality
SIO_000300: 1.729e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

QD
type: SiteQuality
SIO_000300: 1.303e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 513
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47777
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.186239620403321e-4
allele num: 8430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9528
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.28e0

DP
type: SiteQuality
SIO_000300: 1.372325e6

VQSLOD
type: SiteQuality
SIO_000300: -1.618e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 1.1642e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 9.42e0

GenotypeQuality
all individuals: 8
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 436
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47277
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4718
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58609313538891e-5
allele num: 63048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.929e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

FS
type: SiteQuality
SIO_000300: 5.616e0

MQ
type: SiteQuality
SIO_000300: 5.753e1

MQRankSum
type: SiteQuality
SIO_000300: 9.75e-1

DP
type: SiteQuality
SIO_000300: 1.371763e6

QD
type: SiteQuality
SIO_000300: 1.427e1

GenotypeQuality
all individuals: 460
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46979
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4701
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.732501732501733e-4
allele num: 5772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 1.578e0

VQSLOD
type: SiteQuality
SIO_000300: -1.195e0

DP
type: SiteQuality
SIO_000300: 1.372721e6

QD
type: SiteQuality
SIO_000300: 5.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2969
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5772
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.186521120075937e-4
allele num: 8428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63006
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.195e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

DP
type: SiteQuality
SIO_000300: 1.372721e6

FS
type: SiteQuality
SIO_000300: 1.578e0

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.102770657878677e-5
allele num: 16386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58609313538891e-5
allele num: 63048
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.101281781886951e-4
allele num: 9518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.946e1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

FS
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 1.372919e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

MQRankSum
type: SiteQuality
SIO_000300: -2.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5808
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63062
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.844861135680169e-5
allele num: 11306
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16390
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MQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.908e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.372864e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 6.04e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585238261310675e-5
allele num: 63082
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.42e1

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.029e0

DP
type: SiteQuality
SIO_000300: 1.37434e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.452e0

GenotypeQuality
all individuals: 936
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 6
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585188003297191e-5
allele num: 63084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.63e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

DP
type: SiteQuality
SIO_000300: 1.374548e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.128e-1

QD
type: SiteQuality
SIO_000300: 7.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.291e0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 48282
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 150
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.167564143173899e-5
allele num: 63140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

FS
type: SiteQuality
SIO_000300: 1.338e0

DP
type: SiteQuality
SIO_000300: 1.377097e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.15e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

QD
type: SiteQuality
SIO_000300: 9.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.582578970690638e-5
allele num: 63188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
SIO_000300: 8.77e-1

QD
type: SiteQuality
SIO_000300: 1.037e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.378515e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.097560975609756e-5
allele num: 16400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.759e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.825e1

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

DP
type: SiteQuality
SIO_000300: 1.37902e6

VQSLOD
type: SiteQuality
SIO_000300: -2.022e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

QD
type: SiteQuality
SIO_000300: 6.68e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

South Asian
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African
type: Population
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East Asian
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58363158394831e-5
allele num: 63146
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 828
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.377052e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -5.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.287e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.22e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4771
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.165558721114277e-5
allele num: 63180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9616
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South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5846
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.65e-1

DP
type: SiteQuality
SIO_000300: 1.377286e6

VQSLOD
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 494
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3221
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4747
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583832240489087e-5
allele num: 63138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.927e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
SIO_000300: 7.57e-1

QD
type: SiteQuality
SIO_000300: 1.027e1

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 1.376622e6

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.75e1
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GenotypeQuality
all individuals: 3221
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4747
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.106497313141182e-5
allele num: 16376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 1.027e1

FS
type: SiteQuality
SIO_000300: 7.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 1.376622e6

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.927e0

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 3260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 535
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variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.042970379641218e-4
allele num: 9588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585137748470342e-5
allele num: 63086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.513e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.302e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.223e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

FS
type: SiteQuality
SIO_000300: 6.399e0

DP
type: SiteQuality
SIO_000300: 1.375413e6

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 260
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variant carriers: 0

GenotypeQuality
all individuals: 528
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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variant carriers: 4

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 900
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 47889
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.33813975598162e-5
allele num: 63110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.189e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.75e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

DP
type: SiteQuality
SIO_000300: 1.375775e6

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 587
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4738
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3305
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 241
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 140
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variant carriers: 0

GenotypeQuality
all individuals: 368
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variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584384308257811e-5
allele num: 63116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 1.768e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

QD
type: SiteQuality
SIO_000300: 1.512e1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.375087e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 3310
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 577
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variant carriers: 0

GenotypeQuality
all individuals: 4561
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 1

GenotypeQuality
all individuals: 619
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5838
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.182312603452353e-4
allele num: 8458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63006
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.370046e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.292e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 1.551e1

GenotypeQuality
all individuals: 601
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 580
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 478
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 242
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63020
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.10798924993892e-5
allele num: 16372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5848
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.232e0

FS
type: SiteQuality
SIO_000300: 3.049e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

MQRankSum
type: SiteQuality
SIO_000300: -1.401e0

DP
type: SiteQuality
SIO_000300: 1.370213e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.183e0

QD
type: SiteQuality
SIO_000300: 1.655e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.586747485005236e-5
allele num: 63022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.592e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

QD
type: SiteQuality
SIO_000300: 9.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.005e-1

DP
type: SiteQuality
SIO_000300: 1.368821e6

GenotypeQuality
all individuals: 4530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62950
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183992422448496e-4
allele num: 8446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.484e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.762e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.918e1

QD
type: SiteQuality
SIO_000300: 1.044e1

DP
type: SiteQuality
SIO_000300: 1.364831e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
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variant carriers: 0

GenotypeQuality
all individuals: 226
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variant carriers: 0

GenotypeQuality
all individuals: 555
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variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62950
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.76772140710624e-4
allele num: 11314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.918e1

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 2.484e0

QD
type: SiteQuality
SIO_000300: 1.044e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.13e-1

DP
type: SiteQuality
SIO_000300: 1.364831e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.762e0

GenotypeQuality
all individuals: 3592
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46394
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.590938017054855e-5
allele num: 62856
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.564e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

QD
type: SiteQuality
SIO_000300: 7.37e0

FS
type: SiteQuality
SIO_000300: 9.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 1.359546e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

GenotypeQuality
all individuals: 661
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.059322033898305e-4
allele num: 9440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.699999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.357415e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 158
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591241805104704e-5
allele num: 62844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.124448799608035e-5
allele num: 16328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.568e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

DP
type: SiteQuality
SIO_000300: 1.358033e6

MQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

QD
type: SiteQuality
SIO_000300: 1.259e1

VQSLOD
type: SiteQuality
SIO_000300: -4.753e-1

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3645
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 847
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variant carriers: 0

GenotypeQuality
all individuals: 204
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variant carriers: 0

GenotypeQuality
all individuals: 690
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variant carriers: 0

GenotypeQuality
all individuals: 523
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GenotypeQuality
all individuals: 44773
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variant carriers: 0

GenotypeQuality
all individuals: 499
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variant carriers: 0

GenotypeQuality
all individuals: 406
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variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.225640397107489e-4
allele num: 16318
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.45e-1

FS
type: SiteQuality
SIO_000300: 3.105e0

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

DP
type: SiteQuality
SIO_000300: 1.349148e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

GenotypeQuality
all individuals: 3747
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4087
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43619
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variant carriers: 0

GenotypeQuality
all individuals: 959
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 1143
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 796
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variant carriers: 0

GenotypeQuality
all individuals: 1288
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variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5720
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.071581654522075e-4
allele num: 9332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.149e0

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

DP
type: SiteQuality
SIO_000300: 1.342967e6

QD
type: SiteQuality
SIO_000300: 1.128e1

VQSLOD
type: SiteQuality
SIO_000300: 9.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

GenotypeQuality
all individuals: 4066
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 210
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variant carriers: 0

GenotypeQuality
all individuals: 1037
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GenotypeQuality
all individuals: 870
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 976
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GenotypeQuality
all individuals: 6
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variant carriers: 2

GenotypeQuality
all individuals: 127
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 615
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.187084520417854e-4
allele num: 8424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.142506142506142e-5
allele num: 16280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.266e1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.48e-1

FS
type: SiteQuality
SIO_000300: 1.372e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.342913e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.27e0

GenotypeQuality
all individuals: 784
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
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GenotypeQuality
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GenotypeQuality
all individuals: 1074
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GenotypeQuality
all individuals: 201
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variant carriers: 0

GenotypeQuality
all individuals: 968
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.243158366980709e-4
allele num: 62412
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 1.956251111506313e-3
allele num: 11246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

African
type: Population
allele count: 243
allele frequency: 2.601713062098501e-2
allele num: 9340
num of homozygotes: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.210653753026634e-3
allele num: 826
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

DP
type: SiteQuality
SIO_000300: 1.345253e6

QD
type: SiteQuality
SIO_000300: 1.351e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

FS
type: SiteQuality
SIO_000300: 3.278e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4112
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variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.246469833119384e-4
allele num: 62320
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.199e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

DP
type: SiteQuality
SIO_000300: 1.341037e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.42e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 186
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GenotypeQuality
all individuals: 595
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GenotypeQuality
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GenotypeQuality
all individuals: 854
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 928
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GenotypeQuality
all individuals: 44813
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variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62274
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.231527093596059e-4
allele num: 16240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5668
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.899e1

DP
type: SiteQuality
SIO_000300: 1.342121e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.92e-1

FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.57e-1

QD
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SIO_000300: 7.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.15e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11210
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5658
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.607096940087426e-5
allele num: 62224
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.336833e6

FS
type: SiteQuality
SIO_000300: 6.545e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.519e0

QD
type: SiteQuality
SIO_000300: 1.002e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

African
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allele frequency: 1.089087344805053e-4
allele num: 9182
num of homozygotes: 0

Latino
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allele frequency: 2.680965147453083e-4
allele num: 11190
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5630
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European (Non-Finnish)
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allele count: 23
allele frequency: 3.701319600901191e-4
allele num: 62140
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16184
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -2.054e0

ClippingRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-2

FS
type: SiteQuality
SIO_000300: 2.429e0

DP
type: SiteQuality
SIO_000300: 1.333848e6

MQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.147e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.089087344805053e-4
allele num: 9182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16172
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.332327e6

VQSLOD
type: SiteQuality
SIO_000300: -2.012e0

FS
type: SiteQuality
SIO_000300: 1.9393e1

MQRankSum
type: SiteQuality
SIO_000300: -1.088e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

QD
type: SiteQuality
SIO_000300: 1.193e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.610098538030527e-5
allele num: 62108
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.181976871045167e-4
allele num: 9166
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16164
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.198e-1

QD
type: SiteQuality
SIO_000300: 9.74e0

FS
type: SiteQuality
SIO_000300: 6.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.23e-1

DP
type: SiteQuality
SIO_000300: 1.332453e6

GenotypeQuality
all individuals: 4638
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.610565308423257e-5
allele num: 62090
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8396
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16152
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5622
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9150
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.661e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.331686e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

QD
type: SiteQuality
SIO_000300: 1.569e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.382e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62008
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African
type: Population
allele count: 1
allele frequency: 1.096491228070175e-4
allele num: 9120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11184
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.091e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5592
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.240540875821858e-4
allele num: 16122
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 61932
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

African
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.614569878584345e-5
allele num: 61936
num of homozygotes: 0

Latino
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South Asian
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East Asian
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African
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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DP
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 55
allele frequency: 8.891619244697362e-4
allele num: 61856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 8.960573476702509e-4
allele num: 5580
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Other
type: Population
allele count: 1
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allele num: 814
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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DP
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 2

GenotypeQuality
all individuals: 552
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11128
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5512
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.395783421178726e-4
allele num: 8348
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.568e1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

DP
type: SiteQuality
SIO_000300: 1.321782e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 6.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.628823663550184e-5
allele num: 61394
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8788
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Latino
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allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15946
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5516
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

DP
type: SiteQuality
SIO_000300: 1.322223e6

ReadPosRankSum
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SIO_000300: 8.03e-1

ClippingRankSum
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SIO_000300: -3.83e-1

FS
type: SiteQuality
SIO_000300: 2.411e0

VQSLOD
type: SiteQuality
SIO_000300: 9.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

African
type: Population
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allele frequency: 1.150483202945237e-4
allele num: 8692
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Latino
type: Population
allele count: 1
allele frequency: 9.004141905276428e-5
allele num: 11106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61190
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South Asian
type: Population
allele count: 1
allele frequency: 6.307556452630251e-5
allele num: 15854
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5474
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.03e-1

MQRankSum
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SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 3.361e0

QD
type: SiteQuality
SIO_000300: 1.191e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.928e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

DP
type: SiteQuality
SIO_000300: 1.317077e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.636821946508659e-5
allele num: 61094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8668
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15776
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11082
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.119e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

QD
type: SiteQuality
SIO_000300: 1.42e1

DP
type: SiteQuality
SIO_000300: 1.314096e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.84e0

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

MQ
type: SiteQuality
SIO_000300: 5.851e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

GenotypeQuality
all individuals: 3814
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 558
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.64630733265286e-5
allele num: 60742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

QD
type: SiteQuality
SIO_000300: 5.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.554e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

DP
type: SiteQuality
SIO_000300: 1.3073e6

GenotypeQuality
all individuals: 497
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variant carriers: 0

GenotypeQuality
all individuals: 800
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 749
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.935184575903139e-5
allele num: 60788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.417661404184315e-5
allele num: 15582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11014
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

FS
type: SiteQuality
SIO_000300: 3.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.562e0

QD
type: SiteQuality
SIO_000300: 1.241e1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

DP
type: SiteQuality
SIO_000300: 1.307313e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele num: 10904
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.665223472990075e-5
allele num: 60052
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.211e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.405e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.92e-1

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5296
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.332933453297344e-4
allele num: 60018
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Other
type: Population
allele count: 0
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allele num: 770
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.18e0

DP
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.272e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59208
num of homozygotes: 0

Latino
type: Population
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allele frequency: 9.29022668153103e-5
allele num: 10764
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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South Asian
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
type: SiteQuality
SIO_000300: 1.319e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

DP
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MQ
type: SiteQuality
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