16-71772812-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772812
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772812
    reference: chr 16
allele count: 1
allele frequency: 8.339866228545694e-6
allele num: 119906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.543+33G>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2277+33G>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2268+33G>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2337+33G>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2268+33G>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2277+33G>C
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

16-71772813-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772813
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772813
    reference: chr 16
allele count: 13
allele frequency: 1.082990386377647e-4
allele num: 120038
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2268+32T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.543+32T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2268+32T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2277+32T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2337+32T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2277+32T>C
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6560
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5478
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

16-71772824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772824
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772824
    reference: chr 16
allele count: 1
allele frequency: 8.304130474498016e-6
allele num: 120422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.543+21G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2337+21G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2268+21G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2268+21G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2277+21G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2277+21G>A
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

16-71772826-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772826
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772826
    reference: chr 16
allele count: 1
allele frequency: 8.296689620841284e-6
allele num: 120530
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2277+19T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2268+19T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.543+19T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2268+19T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2277+19T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2337+19T>C
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34480
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

16-71772826-AAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772826
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772823
    reference: chr 16
allele count: 1
allele frequency: 8.296689620841284e-6
allele num: 120530
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2277+16_2277+18delCTT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2268+16_2268+18delCTT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2337+16_2337+18delCTT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.543+16_543+18delCTT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2277+16_2277+18delCTT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2268+16_2268+18delCTT
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34480
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: AAAG
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-71772827-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772827
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772827
    reference: chr 16
allele count: 1
allele frequency: 8.294349888855711e-6
allele num: 120564
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2268+18T>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2268+18T>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2277+18T>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.543+18T>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2277+18T>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2337+18T>G
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2637
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6384
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3200
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34484
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/16-71772831-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772831
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772831
    reference: chr 16
allele count: 1
allele frequency: 8.283906027370025e-6
allele num: 120716
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.543+14T>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2268+14T>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2268+14T>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2277+14T>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2277+14T>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2337+14T>G
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3204
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

16-71772848-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772848
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772848
    reference: chr 16
allele count: 1
allele frequency: 8.253549026081216e-6
allele num: 121160
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2274A>G
  hgvsp: ENST00000423132.2:c.2274A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2334A>G
  hgvsp: ENST00000433195.2:c.2334A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2265A>G
  hgvsp: ENST00000569748.1:c.2265A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1641A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.540A>G
  hgvsp: ENST00000564155.1:c.540A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2274A>G
  hgvsp: ENST00000393512.3:c.2274A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2265A>G
  hgvsp: ENST00000299980.4:c.2265A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5551
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3724
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro758Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-71772857-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772857
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772857
    reference: chr 16
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1632T>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2256T>G
  hgvsp: ENST00000569748.1:c.2256T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2256T>G
  hgvsp: ENST00000299980.4:c.2256T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2265T>G
  hgvsp: ENST00000393512.3:c.2265T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2265T>G
  hgvsp: ENST00000423132.2:c.2265T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.531T>G
  hgvsp: ENST00000564155.1:c.531T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2325T>G
  hgvsp: ENST00000433195.2:c.2325T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2741
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala755Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

16-71772865-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772865
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772865
    reference: chr 16
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2248T>A
  hgvsp: ENSP00000454523.1:p.Phe750Ile
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2257T>A
  hgvsp: ENSP00000377148.3:p.Phe753Ile
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2257T>A
  hgvsp: ENSP00000409153.2:p.Phe753Ile
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2248T>A
  hgvsp: ENSP00000299980.4:p.Phe750Ile
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1624T>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.523T>A
  hgvsp: ENSP00000454219.1:p.Phe175Ile
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2317T>A
  hgvsp: ENSP00000403259.2:p.Phe773Ile
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3300
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3426
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe753Ile
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

16-71772875-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772875
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772875
    reference: chr 16
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2247G>A
  hgvsp: ENST00000393512.3:c.2247G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2247G>A
  hgvsp: ENST00000423132.2:c.2247G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1614G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.513G>A
  hgvsp: ENST00000564155.1:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2238G>A
  hgvsp: ENST00000569748.1:c.2238G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2307G>A
  hgvsp: ENST00000433195.2:c.2307G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2238G>A
  hgvsp: ENST00000299980.4:c.2238G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34516
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr749Thr
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

16-71772884-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772884
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772884
    reference: chr 16
allele count: 17
allele frequency: 1.400329489291598e-4
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2298A>G
  hgvsp: ENST00000433195.2:c.2298A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2238A>G
  hgvsp: ENST00000423132.2:c.2238A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2238A>G
  hgvsp: ENST00000393512.3:c.2238A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2229A>G
  hgvsp: ENST00000569748.1:c.2229A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.504A>G
  hgvsp: ENST00000564155.1:c.504A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1605A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2229A>G
  hgvsp: ENST00000299980.4:c.2229A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7005
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3782
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu746Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

16-71772910-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772910
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772910
    reference: chr 16
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1579A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2203A>G
  hgvsp: ENSP00000454523.1:p.Ile735Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.478A>G
  hgvsp: ENSP00000454219.1:p.Ile160Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2212A>G
  hgvsp: ENSP00000377148.3:p.Ile738Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2212A>G
  hgvsp: ENSP00000409153.2:p.Ile738Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2272A>G
  hgvsp: ENSP00000403259.2:p.Ile758Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2203A>G
  hgvsp: ENSP00000299980.4:p.Ile735Val
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile738Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

16-71772911-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772911
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772911
    reference: chr 16
allele count: 9
allele frequency: 7.412898443291327e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2271G>A
  hgvsp: ENST00000433195.2:c.2271G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1578G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2211G>A
  hgvsp: ENST00000393512.3:c.2211G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2202G>A
  hgvsp: ENST00000569748.1:c.2202G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2211G>A
  hgvsp: ENST00000423132.2:c.2211G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.477G>A
  hgvsp: ENST00000564155.1:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2202G>A
  hgvsp: ENST00000299980.4:c.2202G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr737Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

16-71772912-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772912
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772912
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1577C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2210C>T
  hgvsp: ENSP00000409153.2:p.Thr737Met
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2270C>T
  hgvsp: ENSP00000403259.2:p.Thr757Met
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2201C>T
  hgvsp: ENSP00000454523.1:p.Thr734Met
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2210C>T
  hgvsp: ENSP00000377148.3:p.Thr737Met
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2201C>T
  hgvsp: ENSP00000299980.4:p.Thr734Met
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.476C>T
  hgvsp: ENSP00000454219.1:p.Thr159Met
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34529
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3438
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr737Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-71772921-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772921
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772921
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.467C>T
  hgvsp: ENSP00000454219.1:p.Thr156Ile
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2192C>T
  hgvsp: ENSP00000299980.4:p.Thr731Ile
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2192C>T
  hgvsp: ENSP00000454523.1:p.Thr731Ile
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2261C>T
  hgvsp: ENSP00000403259.2:p.Thr754Ile
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2201C>T
  hgvsp: ENSP00000377148.3:p.Thr734Ile
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2201C>T
  hgvsp: ENSP00000409153.2:p.Thr734Ile
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1568C>T
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7017
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr734Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

16-71772959-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772959
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772959
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.429A>G
  hgvsp: ENST00000564155.1:c.429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2163A>G
  hgvsp: ENST00000423132.2:c.2163A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2163A>G
  hgvsp: ENST00000393512.3:c.2163A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1530A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2223A>G
  hgvsp: ENST00000433195.2:c.2223A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2154A>G
  hgvsp: ENST00000569748.1:c.2154A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2154A>G
  hgvsp: ENST00000299980.4:c.2154A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7005
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34532
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu721Glu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

16-71772964-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772964
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772964
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2149A>C
  hgvsp: ENSP00000454523.1:p.Ile717Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2158A>C
  hgvsp: ENSP00000377148.3:p.Ile720Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2158A>C
  hgvsp: ENSP00000409153.2:p.Ile720Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2149A>C
  hgvsp: ENSP00000299980.4:p.Ile717Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1525A>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2218A>C
  hgvsp: ENSP00000403259.2:p.Ile740Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.424A>C
  hgvsp: ENSP00000454219.1:p.Ile142Leu
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile720Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

16-71772965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772965
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772965
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2157G>A
  hgvsp: ENST00000423132.2:c.2157G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1524G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2157G>A
  hgvsp: ENST00000393512.3:c.2157G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.423G>A
  hgvsp: ENST00000564155.1:c.423G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2148G>A
  hgvsp: ENST00000569748.1:c.2148G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2217G>A
  hgvsp: ENST00000433195.2:c.2217G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2148G>A
  hgvsp: ENST00000299980.4:c.2148G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6993
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys719Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/16-71772980-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772980
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772980
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2133T>G
  hgvsp: ENSP00000299980.4:p.Ser711Arg
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2202T>G
  hgvsp: ENSP00000403259.2:p.Ser734Arg
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2142T>G
  hgvsp: ENSP00000409153.2:p.Ser714Arg
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2142T>G
  hgvsp: ENSP00000377148.3:p.Ser714Arg
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1509T>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.408T>G
  hgvsp: ENSP00000454219.1:p.Ser136Arg
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2133T>G
  hgvsp: ENSP00000454523.1:p.Ser711Arg
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7048
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34534
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser714Arg
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

16-71772986-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772986
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772986
    reference: chr 16
allele count: 5
allele frequency: 4.118276912939626e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2136A>G
  hgvsp: ENST00000423132.2:c.2136A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2127A>G
  hgvsp: ENST00000299980.4:c.2127A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2136A>G
  hgvsp: ENST00000393512.3:c.2136A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1503A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2127A>G
  hgvsp: ENST00000569748.1:c.2127A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.402A>G
  hgvsp: ENST00000564155.1:c.402A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2196A>G
  hgvsp: ENST00000433195.2:c.2196A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3442
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala712Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-71772998-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71772998
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71772998
    reference: chr 16
allele count: 37
allele frequency: 3.04747471419629e-4
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2115C>T
  hgvsp: ENST00000299980.4:c.2115C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2184C>T
  hgvsp: ENST00000433195.2:c.2184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.390C>T
  hgvsp: ENST00000564155.1:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1491C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2124C>T
  hgvsp: ENST00000393512.3:c.2124C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2124C>T
  hgvsp: ENST00000423132.2:c.2124C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2115C>T
  hgvsp: ENST00000569748.1:c.2115C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro708Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD

16-71773015-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773015
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773015
    reference: chr 16
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2117-10A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1484-10A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.383-10A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2108-10A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2108-10A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2117-10A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2177-10A>G
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6829
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3784
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

16-71773020-GAAGAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773020
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773015
    reference: chr 16
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2117-20_2117-16delATCTT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2117-20_2117-16delATCTT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1484-20_*1484-16delATCTT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.383-20_383-16delATCTT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2108-20_2108-16delATCTT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2177-20_2177-16delATCTT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2108-20_2108-16delATCTT
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7359
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3240
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: GAAGAT
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

16-71773024-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773024
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773024
    reference: chr 16
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2117-19T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2108-19T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2117-19T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.383-19T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1484-19T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2108-19T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2177-19T>C
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6817
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2765
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

16-71773032-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773032
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773032
    reference: chr 16
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2108-27A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1484-27A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2117-27A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.383-27A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2117-27A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2108-27A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2177-27A>G
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

16-71773034-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773034
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773034
    reference: chr 16
allele count: 6
allele frequency: 4.942095118857387e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2117-29A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.383-29A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2108-29A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2117-29A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2177-29A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2108-29A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1484-29A>G
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

16-71773036-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773036
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773036
    reference: chr 16
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2117-31C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2108-31C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2108-31C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2117-31C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2177-31C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.383-31C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1484-31C>T
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3244
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2643
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3450
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

16-71773038-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773038
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773038
    reference: chr 16
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2108-33T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2117-33T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.383-33T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2117-33T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1484-33T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2177-33T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2108-33T>C
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6790
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3800
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/16-71773041-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773041
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773041
    reference: chr 16
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.383-36G>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2108-36G>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2177-36G>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2108-36G>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2117-36G>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1484-36G>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2117-36G>T
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2643
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2773
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-71773045-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773045
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773045
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2177-40G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2108-40G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.383-40G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2117-40G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2108-40G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2117-40G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1484-40G>A
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34569
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

16-71773051-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773051
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773051
    reference: chr 16
allele count: 17
allele frequency: 1.400352559350236e-4
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2117-46G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1484-46G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2117-46G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.383-46G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2108-46G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2108-46G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2177-46G>A
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3466
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34581
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 3323
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

16-71773054-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773054
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773054
    reference: chr 16
allele count: 88
allele frequency: 7.248644997611242e-4
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2177-49C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2117-49C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1484-49C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2117-49C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2108-49C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.383-49C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2108-49C>T
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 9.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5765
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34617
  bin: 9.75e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2645
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/16-71773055-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773055
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773054
    reference: chr 16
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2108-51delT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2108-51delT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2117-51delT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2177-51delT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2117-51delT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.383-51delT
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1484-51delT
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: CA
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

16-71773086-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773086
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773086
    reference: chr 16
allele count: 8
allele frequency: 6.589568712727751e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1483+51G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2176+51G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2107+51G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.382+51G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2116+51G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2116+51G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2107+51G>A
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24398
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26696
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-71773093-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773093
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773093
    reference: chr 16
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2176+44A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1483+44A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.382+44A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2116+44A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2107+44A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2116+44A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2107+44A>G
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6040
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26720
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

16-71773108-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773108
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773108
    reference: chr 16
allele count: 4
allele frequency: 3.294784356363876e-5
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1483+29A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2107+29A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.382+29A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2116+29A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2116+29A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2176+29A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2107+29A>G
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11180
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6044
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24396
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26743
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-71773118-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773118
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773118
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.382+19C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1483+19C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2116+19C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2107+19C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2176+19C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2116+19C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2107+19C>G
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6038
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24392
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

16-71773118-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773118
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773118
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.382+19C>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2116+19C>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2107+19C>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2176+19C>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1483+19C>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2107+19C>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2116+19C>A
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24392
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26745
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-71773127-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773127
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773127
    reference: chr 16
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2116+10C>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2116+10C>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2107+10C>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.382+10C>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2176+10C>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2107+10C>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1483+10C>A
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

16-71773132-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773132
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773132
    reference: chr 16
allele count: 3
allele frequency: 2.471088267272907e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2116+5G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2107+5G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2176+5G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1483+5G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2116+5G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.382+5G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2107+5G>A
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24391
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6031
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: c.2116+5G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

16-71773133-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773133
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773133
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2107+4C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2176+4C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2107+4C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1483+4C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2116+4C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.382+4C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2116+4C>T
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 8.25e1
  variant carriers: 0
hgvs: c.2116+4C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum

16-71773145-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773145
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773145
    reference: chr 16
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1475T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2108T>C
  hgvsp: ENSP00000409153.2:p.Ile703Thr
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2099T>C
  hgvsp: ENSP00000299980.4:p.Ile700Thr
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2108T>C
  hgvsp: ENSP00000377148.3:p.Ile703Thr
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.374T>C
  hgvsp: ENSP00000454219.1:p.Ile125Thr
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2099T>C
  hgvsp: ENSP00000454523.1:p.Ile700Thr
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2168T>C
  hgvsp: ENSP00000403259.2:p.Ile723Thr
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24388
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile703Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

16-71773151-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773151
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773151
    reference: chr 16
allele count: 31
allele frequency: 2.553752368399374e-4
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1469A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2093A>G
  hgvsp: ENSP00000454523.1:p.Asn698Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2093A>G
  hgvsp: ENSP00000299980.4:p.Asn698Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.368A>G
  hgvsp: ENSP00000454219.1:p.Asn123Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2162A>G
  hgvsp: ENSP00000403259.2:p.Asn721Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2102A>G
  hgvsp: ENSP00000409153.2:p.Asn701Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2102A>G
  hgvsp: ENSP00000377148.3:p.Asn701Ser
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26740
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6029
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24388
  bin: 9.75e1
  variant carriers: 31
hgvs: p.Asn701Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-71773153-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773153
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773153
    reference: chr 16
allele count: 41
allele frequency: 3.377654754255021e-4
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1467C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2100C>T
  hgvsp: ENST00000393512.3:c.2100C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2160C>T
  hgvsp: ENST00000433195.2:c.2160C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.366C>T
  hgvsp: ENST00000564155.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2091C>T
  hgvsp: ENST00000569748.1:c.2091C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2091C>T
  hgvsp: ENST00000299980.4:c.2091C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2100C>T
  hgvsp: ENST00000423132.2:c.2100C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 24361
  bin: 9.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe700Phe
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

16-71773155-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773155
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773155
    reference: chr 16
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1465T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2158T>C
  hgvsp: ENSP00000403259.2:p.Phe720Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.364T>C
  hgvsp: ENSP00000454219.1:p.Phe122Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2098T>C
  hgvsp: ENSP00000377148.3:p.Phe700Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2089T>C
  hgvsp: ENSP00000454523.1:p.Phe697Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2098T>C
  hgvsp: ENSP00000409153.2:p.Phe700Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2089T>C
  hgvsp: ENSP00000299980.4:p.Phe697Leu
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6510
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6029
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26750
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe700Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

16-71773178-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773178
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773178
    reference: chr 16
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2066A>G
  hgvsp: ENSP00000454523.1:p.Asp689Gly
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2066A>G
  hgvsp: ENSP00000299980.4:p.Asp689Gly
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2075A>G
  hgvsp: ENSP00000409153.2:p.Asp692Gly
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.341A>G
  hgvsp: ENSP00000454219.1:p.Asp114Gly
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2075A>G
  hgvsp: ENSP00000377148.3:p.Asp692Gly
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2135A>G
  hgvsp: ENSP00000403259.2:p.Asp712Gly
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1442A>G
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24302
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp692Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

16-71773182-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773182
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773182
    reference: chr 16
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2062T>C
  hgvsp: ENST00000569748.1:c.2062T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2131T>C
  hgvsp: ENST00000433195.2:c.2131T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1438T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2071T>C
  hgvsp: ENST00000393512.3:c.2071T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.337T>C
  hgvsp: ENST00000564155.1:c.337T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2062T>C
  hgvsp: ENST00000299980.4:c.2062T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2071T>C
  hgvsp: ENST00000423132.2:c.2071T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6487
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu691Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

16-71773186-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773186
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773186
    reference: chr 16
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2127C>A
  hgvsp: ENSP00000403259.2:p.Phe709Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.333C>A
  hgvsp: ENSP00000454219.1:p.Phe111Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2058C>A
  hgvsp: ENSP00000454523.1:p.Phe686Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2058C>A
  hgvsp: ENSP00000299980.4:p.Phe686Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2067C>A
  hgvsp: ENSP00000377148.3:p.Phe689Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1434C>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2067C>A
  hgvsp: ENSP00000409153.2:p.Phe689Leu
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26653
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe689Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

16-71773190-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773190
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773190
    reference: chr 16
allele count: 10
allele frequency: 8.243615319934711e-5
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2063C>G
  hgvsp: ENSP00000377148.3:p.Pro688Arg
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2063C>G
  hgvsp: ENSP00000409153.2:p.Pro688Arg
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.329C>G
  hgvsp: ENSP00000454219.1:p.Pro110Arg
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2054C>G
  hgvsp: ENSP00000299980.4:p.Pro685Arg
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1430C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2054C>G
  hgvsp: ENSP00000454523.1:p.Pro685Arg
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2123C>G
  hgvsp: ENSP00000403259.2:p.Pro708Arg
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8420
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5938
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26538
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro688Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

16-71773190-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773190
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773190
    reference: chr 16
allele count: 28430
allele frequency: 2.343659835457438e-1
allele num: 121306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2063C>A
  hgvsp: ENSP00000409153.2:p.Pro688His
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.329C>A
  hgvsp: ENSP00000454219.1:p.Pro110His
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2054C>A
  hgvsp: ENSP00000454523.1:p.Pro685His
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2063C>A
  hgvsp: ENSP00000377148.3:p.Pro688His
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1430C>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2123C>A
  hgvsp: ENSP00000403259.2:p.Pro708His
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2054C>A
  hgvsp: ENSP00000299980.4:p.Pro685His
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 2.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 6.75e1
  variant carriers: 1741
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 1915
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 4.75e1
  variant carriers: 539
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 6.25e1
  variant carriers: 1558
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.25e1
  variant carriers: 798
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 2.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 8420
  bin: 9.75e1
  variant carriers: 8172
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 4.25e1
  variant carriers: 346
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 7.75e1
  variant carriers: 1940
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 9.25e1
  variant carriers: 1713
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 3.75e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 8.25e1
  variant carriers: 1887
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 5.75e1
  variant carriers: 1166
genotype depth: GenotypeDepth
  all individuals: 11096
  bin: 3.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 8.75e1
  variant carriers: 1883
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5938
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 4
hgvs: p.Pro688His
num of homozygotes: 4189
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

16-71773190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773190
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773190
    reference: chr 16
allele count: 2
allele frequency: 1.648723063986942e-5
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1430C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2063C>T
  hgvsp: ENSP00000409153.2:p.Pro688Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2063C>T
  hgvsp: ENSP00000377148.3:p.Pro688Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.329C>T
  hgvsp: ENSP00000454219.1:p.Pro110Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2123C>T
  hgvsp: ENSP00000403259.2:p.Pro708Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2054C>T
  hgvsp: ENSP00000299980.4:p.Pro685Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2054C>T
  hgvsp: ENSP00000454523.1:p.Pro685Leu
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8420
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24967
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26538
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro688Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

16-71773194-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773194
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773194
    reference: chr 16
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.325C>G
  hgvsp: ENSP00000454219.1:p.Pro109Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2059C>G
  hgvsp: ENSP00000409153.2:p.Pro687Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1426C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2059C>G
  hgvsp: ENSP00000377148.3:p.Pro687Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2050C>G
  hgvsp: ENSP00000299980.4:p.Pro684Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2119C>G
  hgvsp: ENSP00000403259.2:p.Pro707Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2050C>G
  hgvsp: ENSP00000454523.1:p.Pro684Ala
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16820
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9729
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro687Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

16-71773196-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773196
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773196
    reference: chr 16
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2048A>T
  hgvsp: ENSP00000299980.4:p.Gln683Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2048A>T
  hgvsp: ENSP00000454523.1:p.Gln683Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2117A>T
  hgvsp: ENSP00000403259.2:p.Gln706Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1424A>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2057A>T
  hgvsp: ENSP00000377148.3:p.Gln686Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.323A>T
  hgvsp: ENSP00000454219.1:p.Gln108Leu
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2057A>T
  hgvsp: ENSP00000409153.2:p.Gln686Leu
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln686Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/16-71773200-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773200
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773200
    reference: chr 16
allele count: 2
allele frequency: 1.649457328538911e-5
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2044T>G
  hgvsp: ENSP00000454523.1:p.Ser682Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2044T>G
  hgvsp: ENSP00000299980.4:p.Ser682Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.319T>G
  hgvsp: ENSP00000454219.1:p.Ser107Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1420T>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2053T>G
  hgvsp: ENSP00000409153.2:p.Ser685Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2053T>G
  hgvsp: ENSP00000377148.3:p.Ser685Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2113T>G
  hgvsp: ENSP00000403259.2:p.Ser705Ala
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser685Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-71773204-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773204
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773204
    reference: chr 16
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.315G>C
  hgvsp: ENSP00000454219.1:p.Gln105His
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2040G>C
  hgvsp: ENSP00000299980.4:p.Gln680His
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2049G>C
  hgvsp: ENSP00000377148.3:p.Gln683His
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2109G>C
  hgvsp: ENSP00000403259.2:p.Gln703His
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2049G>C
  hgvsp: ENSP00000409153.2:p.Gln683His
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2040G>C
  hgvsp: ENSP00000454523.1:p.Gln680His
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1416G>C
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44086
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln683His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

16-71773222-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773222
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773222
    reference: chr 16
allele count: 1
allele frequency: 8.257774694875225e-6
allele num: 121098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1398C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2022C>T
  hgvsp: ENST00000569748.1:c.2022C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2022C>T
  hgvsp: ENST00000299980.4:c.2022C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.297C>T
  hgvsp: ENST00000564155.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2031C>T
  hgvsp: ENST00000393512.3:c.2031C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2031C>T
  hgvsp: ENST00000423132.2:c.2031C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2091C>T
  hgvsp: ENST00000433195.2:c.2091C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala677Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-71773227-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773227
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773227
    reference: chr 16
allele count: 1
allele frequency: 8.26255081468751e-6
allele num: 121028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2026C>G
  hgvsp: ENSP00000409153.2:p.Pro676Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2086C>G
  hgvsp: ENSP00000403259.2:p.Pro696Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.292C>G
  hgvsp: ENSP00000454219.1:p.Pro98Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2017C>G
  hgvsp: ENSP00000299980.4:p.Pro673Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1393C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2026C>G
  hgvsp: ENSP00000377148.3:p.Pro676Ala
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2017C>G
  hgvsp: ENSP00000454523.1:p.Pro673Ala
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9631
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro676Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

16-71773232-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773232
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773232
    reference: chr 16
allele count: 1
allele frequency: 8.276501357346223e-6
allele num: 120824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.287C>T
  hgvsp: ENSP00000454219.1:p.Ala96Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2012C>T
  hgvsp: ENSP00000299980.4:p.Ala671Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2021C>T
  hgvsp: ENSP00000409153.2:p.Ala674Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2012C>T
  hgvsp: ENSP00000454523.1:p.Ala671Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2021C>T
  hgvsp: ENSP00000377148.3:p.Ala674Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2081C>T
  hgvsp: ENSP00000403259.2:p.Ala694Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1388C>T
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43696
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala674Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/16-71773233-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773233
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773233
    reference: chr 16
allele count: 1
allele frequency: 8.278968109414843e-6
allele num: 120788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2011G>T
  hgvsp: ENSP00000299980.4:p.Ala671Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2020G>T
  hgvsp: ENSP00000377148.3:p.Ala674Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.286G>T
  hgvsp: ENSP00000454219.1:p.Ala96Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1387G>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2011G>T
  hgvsp: ENSP00000454523.1:p.Ala671Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2080G>T
  hgvsp: ENSP00000403259.2:p.Ala694Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2020G>T
  hgvsp: ENSP00000409153.2:p.Ala674Ser
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10226
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala674Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-71773233-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773233
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773233
    reference: chr 16
allele count: 1
allele frequency: 8.278968109414843e-6
allele num: 120788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2011G>A
  hgvsp: ENSP00000299980.4:p.Ala671Thr
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.286G>A
  hgvsp: ENSP00000454219.1:p.Ala96Thr
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1387G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2020G>A
  hgvsp: ENSP00000377148.3:p.Ala674Thr
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2020G>A
  hgvsp: ENSP00000409153.2:p.Ala674Thr
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2011G>A
  hgvsp: ENSP00000454523.1:p.Ala671Thr
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2080G>A
  hgvsp: ENSP00000403259.2:p.Ala694Thr
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9481
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala674Thr
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

16-71773239-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773239
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773239
    reference: chr 16
allele count: 2
allele frequency: 1.659833684664797e-5
allele num: 120494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2005C>T
  hgvsp: ENSP00000454523.1:p.Pro669Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2074C>T
  hgvsp: ENSP00000403259.2:p.Pro692Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2014C>T
  hgvsp: ENSP00000409153.2:p.Pro672Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1381C>T
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.280C>T
  hgvsp: ENSP00000454219.1:p.Pro94Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2014C>T
  hgvsp: ENSP00000377148.3:p.Pro672Ser
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2005C>T
  hgvsp: ENSP00000299980.4:p.Pro669Ser
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9306
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro672Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

16-71773241-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773241
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773241
    reference: chr 16
allele count: 1
allele frequency: 8.318221896887321e-6
allele num: 120218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2003C>T
  hgvsp: ENSP00000299980.4:p.Ala668Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2072C>T
  hgvsp: ENSP00000403259.2:p.Ala691Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.278C>T
  hgvsp: ENSP00000454219.1:p.Ala93Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2012C>T
  hgvsp: ENSP00000377148.3:p.Ala671Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2012C>T
  hgvsp: ENSP00000409153.2:p.Ala671Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2003C>T
  hgvsp: ENSP00000454523.1:p.Ala668Val
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1379C>T
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42342
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala671Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

16-71773244-C-CTGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773244
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773247
    reference: chr 16
allele count: 2
allele frequency: 1.667778519012675e-5
allele num: 119920
alternate allele: CTGA
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2000-1_2000insTCA
  hgvsp: ENSP00000299980.4:p.Gly667delinsValSer
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2000-1_2000insTCA
  hgvsp: ENSP00000454523.1:p.Gly667delinsValSer
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: protein_altering_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2009-1_2009insTCA
  hgvsp: ENSP00000377148.3:p.Gly670delinsValSer
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2069-1_2069insTCA
  hgvsp: ENSP00000403259.2:p.Gly690delinsValSer
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.275-1_275insTCA
  hgvsp: ENSP00000454219.1:p.Gly92delinsValSer
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2009-1_2009insTCA
  hgvsp: ENSP00000409153.2:p.Gly670delinsValSer
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1376-1_*1376insTCA
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: protein altering
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17409
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8802
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly670delinsValSer
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

16-71773245-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773245
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773245
    reference: chr 16
allele count: 2
allele frequency: 1.67238063383226e-5
allele num: 119590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.275-1G>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2069-1G>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1376-1G>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2009-1G>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2000-1G>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2000-1G>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2009-1G>C
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17251
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9562
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
hgvs: c.2009-1G>C
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

16-71773247-A-AATGAGATGTGGTTATTAAGAAAAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773247
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773272
    reference: chr 16
allele count: 2
allele frequency: 1.670648378635748e-5
allele num: 119714
alternate allele: AATGAGATGTGGTTATTAAGAAAAAG
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16098
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

16-71773257-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773257
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773257
    reference: chr 16
allele count: 1
allele frequency: 8.456230550669733e-6
allele num: 118256
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2009-13A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2069-13A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2000-13A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.275-13A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1376-13A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2009-13A>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2000-13A>G
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33734
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

16-71773263-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773263
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773263
    reference: chr 16
allele count: 1
allele frequency: 8.560178051703475e-6
allele num: 116820
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2009-19A>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1376-19A>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.275-19A>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2000-19A>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2000-19A>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2009-19A>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2069-19A>C
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

16-71773266-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773266
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773266
    reference: chr 16
allele count: 156
allele frequency: 1.359050755318593e-3
allele num: 114786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2000-22T>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.275-22T>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2009-22T>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2000-22T>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1376-22T>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2069-22T>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2009-22T>A
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12316
  bin: 2.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 10457
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 8891
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3970
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 2
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

16-71773274-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773274
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773274
    reference: chr 16
allele count: 1
allele frequency: 1.102244169128345e-5
allele num: 90724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2069-30G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.275-30G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2009-30G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2009-30G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1376-30G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2000-30G>A
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2000-30G>A
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11889
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3103
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8590
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5839
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

16-71773280-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773280
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773280
    reference: chr 16
allele count: 1
allele frequency: 1.256439251162206e-5
allele num: 79590
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2000-36C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2069-36C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2000-36C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2009-36C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2009-36C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1376-36C>G
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.275-36C>G
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8594
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6305
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3827
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

16-71773282-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71773282
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71773282
    reference: chr 16
allele count: 1
allele frequency: 1.34665625252498e-5
allele num: 74258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454523
  ensembl transcript: ENST00000569748
  gene symbol: AP1G1
  hgvsc: ENST00000569748.1:c.2000-38T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000454219
  ensembl transcript: ENST00000564155
  gene symbol: AP1G1
  hgvsc: ENST00000564155.1:c.275-38T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000409153
  ensembl transcript: ENST00000423132
  gene symbol: AP1G1
  hgvsc: ENST00000423132.2:c.2009-38T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000457726
  ensembl transcript: ENST00000565009
  gene symbol: AP1G1
  hgvsc: ENST00000565009.1:c.*1376-38T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000377148
  ensembl transcript: ENST00000393512
  gene symbol: AP1G1
  hgvsc: ENST00000393512.3:c.2009-38T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000403259
  ensembl transcript: ENST00000433195
  gene symbol: AP1G1
  hgvsc: ENST00000433195.2:c.2069-38T>C
  variant of: http://identifiers.org/hgnc/555
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000166747
  ensembl protein: ENSP00000299980
  ensembl transcript: ENST00000299980
  gene symbol: AP1G1
  hgvsc: ENST00000299980.4:c.2000-38T>C
  variant of: http://identifiers.org/hgnc/555
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12928
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 674
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2559
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3320
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3176
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34461
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508705229172324e-5
allele num: 66282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.185e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.578e1

MQ
type: SiteQuality
SIO_000300: 5.888e1

DP
type: SiteQuality
SIO_000300: 2.921676e6

GenotypeQuality
all individuals: 3178
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2566
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34464
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 3140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730103806228374e-4
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.658474806259989e-4
allele num: 66326
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 1.244e1

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

DP
type: SiteQuality
SIO_000300: 2.924126e6

FS
type: SiteQuality
SIO_000300: 2.692e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.813e0

GenotypeQuality
all individuals: 3524
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6080
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34476
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.937528e6

FS
type: SiteQuality
SIO_000300: 2.768e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.291e0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

QD
type: SiteQuality
SIO_000300: 1.284e1

GenotypeQuality
all individuals: 283
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3199
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3271
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504800312998465e-5
allele num: 66454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15948
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.084e0

FS
type: SiteQuality
SIO_000300: 6.549e0

MQ
type: SiteQuality
SIO_000300: 5.688e1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 2.940141e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

QD
type: SiteQuality
SIO_000300: 1.72e1

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3199
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6313
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15948
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.940141e6

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: -1.084e0

QD
type: SiteQuality
SIO_000300: 1.72e1

FS
type: SiteQuality
SIO_000300: 6.549e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.688e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

GenotypeQuality
all individuals: 247
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3563
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3201
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3273
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66468
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.415e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.822e0

MQRankSum
type: SiteQuality
SIO_000300: -2.106e0

QD
type: SiteQuality
SIO_000300: 1.301e1

DP
type: SiteQuality
SIO_000300: 2.941001e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6558
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34489
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3600
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16060
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.055e0

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e-1

QD
type: SiteQuality
SIO_000300: 1.286e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

DP
type: SiteQuality
SIO_000300: 2.944808e6

MQ
type: SiteQuality
SIO_000300: 5.885e1

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3259
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.1e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.429e1

MQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

DP
type: SiteQuality
SIO_000300: 2.955508e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.97e0

VQSLOD
type: SiteQuality
SIO_000300: 9.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.416e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.96e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3237
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3748
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3289
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.078288353999514e-5
allele num: 16452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

DP
type: SiteQuality
SIO_000300: 2.959093e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.01e-1

FS
type: SiteQuality
SIO_000300: 6.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.17e-2

QD
type: SiteQuality
SIO_000300: 1.38e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2634
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3238
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variant carriers: 0

GenotypeQuality
all individuals: 6986
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 3772
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variant carriers: 0

GenotypeQuality
all individuals: 34513
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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European (Non-Finnish)
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allele frequency: 1.499205421126803e-5
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Other
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ClippingRankSum
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DP
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MQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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FS
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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South Asian
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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FS
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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allele frequency: 1.029678982434888e-3
allele num: 16510
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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MQRankSum
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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Other
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South Asian
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ReadPosRankSum
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DP
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MQ
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FS
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QD
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InbreedingCoeff
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MQRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele num: 66738
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South Asian
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African
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Latino
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East Asian
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European (Finnish)
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QD
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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QD
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ClippingRankSum
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MQ
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Other
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South Asian
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East Asian
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Latino
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European (Finnish)
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FS
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DP
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QD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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BaseQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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QD
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ClippingRankSum
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DP
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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Other
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South Asian
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ReadPosRankSum
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DP
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QD
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: -6.103e0

VQSLOD
type: SiteQuality
SIO_000300: 6.17e-1

ClippingRankSum
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SIO_000300: -3.52e-1

MQ
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SIO_000300: 5.926e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.62e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele num: 16510
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DP
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FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: 1.1e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 16
allele frequency: 2.419110976716057e-3
allele num: 6614
num of homozygotes: 0

African
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 18
allele frequency: 2.697033263410249e-4
allele num: 66740
num of homozygotes: 0

Other
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allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: -1.133e0

DP
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SIO_000300: 2.968942e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

ReadPosRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10406
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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BaseQRankSum
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FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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South Asian
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allele num: 16512
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Latino
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allele count: 0
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allele num: 11578
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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MQ
type: SiteQuality
SIO_000300: 5.068e1

BaseQRankSum
type: SiteQuality
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DP
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele num: 66736
num of homozygotes: 0

African
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allele count: 0
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Latino
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allele num: 11578
num of homozygotes: 0

Other
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East Asian
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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ReadPosRankSum
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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South Asian
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Other
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Latino
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European (Non-Finnish)
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VQSLOD
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MQ
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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Latino
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MQRankSum
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
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FS
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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South Asian
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Other
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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QD
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FS
type: SiteQuality
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VQSLOD
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MQ
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66732
num of homozygotes: 0

European (Finnish)
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Other
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

QD
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SIO_000300: 1.43e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.88e-1

BaseQRankSum
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SIO_000300: 1.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 1.65e-2

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: 4.5e0

DP
type: SiteQuality
SIO_000300: 2.968666e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6769
bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.97e-1

DP
type: SiteQuality
SIO_000300: 2.968895e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.34e-2

BaseQRankSum
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SIO_000300: -3.711e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.969283e6

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

FS
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.49e1

InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
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SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.552e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.54750344662231e-4
allele num: 66732
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e-1

DP
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SIO_000300: 2.970662e6

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.785e0

QD
type: SiteQuality
SIO_000300: 1.436e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12
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variant carriers: 0

African
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allele count: 88
allele frequency: 8.463165993460281e-3
allele num: 10398
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

QD
type: SiteQuality
SIO_000300: 1.437e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

FS
type: SiteQuality
SIO_000300: 5.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 2.975667e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.868e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.975597e6

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
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SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
SIO_000300: 3.54e-1

FS
type: SiteQuality
SIO_000300: 9.539e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.331e0

MQ
type: SiteQuality
SIO_000300: 6.067e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

QD
type: SiteQuality
SIO_000300: 1.667e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.91e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.491983577571999e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
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SIO_000300: 5.935e1

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-2

ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1049
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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num of homozygotes: 0

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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MQRankSum
type: SiteQuality
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DP
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 2.591121091725686e-4
allele num: 11578
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African
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South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
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allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

FS
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QD
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VQSLOD
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MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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ClippingRankSum
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QD
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6038
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 3.409e0

DP
type: SiteQuality
SIO_000300: 3.289946e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
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MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.325e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.008999999999999e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.55e0

MQRankSum
type: SiteQuality
SIO_000300: 9.93e-1

DP
type: SiteQuality
SIO_000300: 3.289782e6

QD
type: SiteQuality
SIO_000300: 1.59e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.097e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.316e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.320000000000001e-2

DP
type: SiteQuality
SIO_000300: 3.289546e6

MQ
type: SiteQuality
SIO_000300: 5.91e1

QD
type: SiteQuality
SIO_000300: 1.151e1

FS
type: SiteQuality
SIO_000300: 3.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

QD
type: SiteQuality
SIO_000300: 1.481e1

VQSLOD
type: SiteQuality
SIO_000300: 6.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e0

FS
type: SiteQuality
SIO_000300: 1.112e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 3.289199e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 25
allele frequency: 2.160013824088474e-3
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495324862143371e-5
allele num: 66736
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 3.289619e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.403e1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 4.795300605406701e-4
allele num: 66732
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 9
allele frequency: 1.360749924402782e-3
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.23e-1

QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

South Asian
type: Population
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Other
type: Population
allele count: 0
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allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
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Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
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FS
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ClippingRankSum
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.39e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.008e0

QD
type: SiteQuality
SIO_000300: 1.119e1

DP
type: SiteQuality
SIO_000300: 3.281419e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 1023
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 6023
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24301
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 94
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.468e1

DP
type: SiteQuality
SIO_000300: 3.281148e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.404e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.373e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.14e-1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 222
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.199580146948568e-4
allele num: 66690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

QD
type: SiteQuality
SIO_000300: 1.51e1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e0

FS
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.83e-2

DP
type: SiteQuality
SIO_000300: 3.429987e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.319e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 24967
bin: 9.75e1
variant carriers: 24137

GenotypeQuality
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bin: 9.25e1
variant carriers: 19

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26538
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variant carriers: 8

GenotypeQuality
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variant carriers: 10

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 930
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 482
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 13423
allele frequency: 2.012745539061329e-1
allele num: 66690
num of homozygotes: 1419

African
type: Population
allele count: 1289
allele frequency: 1.242289899768697e-1
allele num: 10376
num of homozygotes: 92

East Asian
type: Population
allele count: 1732
allele frequency: 2.002775208140611e-1
allele num: 8648
num of homozygotes: 175

South Asian
type: Population
allele count: 8163
allele frequency: 4.944875212018415e-1
allele num: 16508
num of homozygotes: 2072

Other
type: Population
allele count: 239
allele frequency: 2.643805309734513e-1
allele num: 904
num of homozygotes: 38

European (Finnish)
type: Population
allele count: 1440
allele frequency: 2.177199879044451e-1
allele num: 6614
num of homozygotes: 176

Latino
type: Population
allele count: 2144
allele frequency: 1.853709147501297e-1
allele num: 11566
num of homozygotes: 217

BaseQRankSum
type: SiteQuality
SIO_000300: -1.319e0

QD
type: SiteQuality
SIO_000300: 1.51e1

DP
type: SiteQuality
SIO_000300: 3.429987e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.83e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.2e0

FS
type: SiteQuality
SIO_000300: 5.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 5938
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.429987e6

VQSLOD
type: SiteQuality
SIO_000300: 5.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.83e-2

QD
type: SiteQuality
SIO_000300: 1.51e1

FS
type: SiteQuality
SIO_000300: 5.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.319e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 44097
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 428
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variant carriers: 0

GenotypeQuality
all individuals: 835
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variant carriers: 0

GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

FS
type: SiteQuality
SIO_000300: 5.756e0

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 2.080033e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

QD
type: SiteQuality
SIO_000300: 1.177e1

GenotypeQuality
all individuals: 187
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
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variant carriers: 0

GenotypeQuality
all individuals: 44082
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 835
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.602e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.564e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.87e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.515e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.03e-1

QD
type: SiteQuality
SIO_000300: 9.84e0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

DP
type: SiteQuality
SIO_000300: 2.07968e6

GenotypeQuality
all individuals: 833
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9715
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 44123
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variant carriers: 0

GenotypeQuality
all individuals: 389
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000300030003e-5
allele num: 66660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-2

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 1.443e0

MQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

QD
type: SiteQuality
SIO_000300: 1.231e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.079298e6

VQSLOD
type: SiteQuality
SIO_000300: 6.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.55e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 8.25e1
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GenotypeQuality
all individuals: 427
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.148e0

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

FS
type: SiteQuality
SIO_000300: 2.823e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 2.078553e6

QD
type: SiteQuality
SIO_000300: 1.099e1

GenotypeQuality
all individuals: 1479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 376
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 9657
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.67305088024763e-5
allele num: 10338
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.427e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.074129e6

FS
type: SiteQuality
SIO_000300: 5.756e0

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

QD
type: SiteQuality
SIO_000300: 2.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.567e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.04e-1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 797
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variant carriers: 0

GenotypeQuality
all individuals: 1776
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1510
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.593e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e0

DP
type: SiteQuality
SIO_000300: 2.071939e6

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.86e-1

FS
type: SiteQuality
SIO_000300: 2.995e0

VQSLOD
type: SiteQuality
SIO_000300: -3.39e-2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505706628120577e-5
allele num: 66414
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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MQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

BaseQRankSum
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InbreedingCoeff
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SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.99e-1

DP
type: SiteQuality
SIO_000300: 2.063744e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506024096385542e-5
allele num: 66400
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.063145e6

FS
type: SiteQuality
SIO_000300: 2.885e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.95e-2

MQ
type: SiteQuality
SIO_000300: 6.02e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.268e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66400
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.02e1

DP
type: SiteQuality
SIO_000300: 2.063145e6

VQSLOD
type: SiteQuality
SIO_000300: -5.95e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

FS
type: SiteQuality
SIO_000300: 2.885e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.268e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

QD
type: SiteQuality
SIO_000300: 1.038e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019961948479449e-5
allele num: 66226
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.584e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.745e0

FS
type: SiteQuality
SIO_000300: 8.452999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -8.800000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

DP
type: SiteQuality
SIO_000300: 2.044205e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.13421666053245e-5
allele num: 16302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.613e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.464e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.521e1

DP
type: SiteQuality
SIO_000300: 2.025525e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e0

VQSLOD
type: SiteQuality
SIO_000300: -1.367e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10234
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65910
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.231527093596059e-4
allele num: 16240
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.01e-1

MQ
type: SiteQuality
SIO_000300: 5.748e1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8580
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South Asian
type: Population
allele count: 2
allele frequency: 1.239464551313832e-4
allele num: 16136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.48e0

FS
type: SiteQuality
SIO_000300: 1.0623e1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.723e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.000415e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 2
allele frequency: 1.234263144902493e-4
allele num: 16204
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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European (Finnish)
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Other
type: Population
allele count: 0
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allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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QD
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.539219307966999e-5
allele num: 64968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.837044e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

QD
type: SiteQuality
SIO_000300: 1.405e1

VQSLOD
type: SiteQuality
SIO_000300: 8.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5526
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18409
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25308
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 210
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557292802192668e-5
allele num: 64214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 7.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.714268e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.5e-1

QD
type: SiteQuality
SIO_000300: 1.175e1

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21911
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4492
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1382
bin: 9.75e1
variant carriers: 154

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.513809275664408e-5
allele num: 15352
num of homozygotes: 0

African
type: Population
allele count: 147
allele frequency: 1.479468599033816e-2
allele num: 9936
num of homozygotes: 2

Latino
type: Population
allele count: 7
allele frequency: 6.491097922848664e-4
allele num: 10784
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.157407407407407e-3
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63350
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

DP
type: SiteQuality
SIO_000300: 1.636651e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.759e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

GenotypeQuality
all individuals: 4519
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17347
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 853
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.872168345377616e-5
allele num: 53414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.88e0

VQSLOD
type: SiteQuality
SIO_000300: -3.242e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.58e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.044e0

DP
type: SiteQuality
SIO_000300: 1.457037e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

GenotypeQuality
all individuals: 412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 493
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6189
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3474
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2230
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086637175527919e-5
allele num: 47924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5134
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.362779e6

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.798e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.82e0