12-14577804-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577804
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577804
    reference: chr 12
allele count: 19
allele frequency: 1.573134180065906e-4
allele num: 120778
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1047A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+700A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.955A>G
  hgvsp: ENSP00000443179.1:p.Lys319Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1113A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.955A>G
  hgvsp: ENSP00000444589.1:p.Lys319Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1114A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.955A>G
  hgvsp: ENSP00000379575.2:p.Lys319Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.955A>G
  hgvsp: ENSP00000445955.1:p.Lys319Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.979A>G
  hgvsp: ENSP00000440440.1:p.Lys327Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9467A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.955A>G
  hgvsp: ENSP00000261168.4:p.Lys319Glu
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36283
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys319Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

12-14577806-AAAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577806
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577803
    reference: chr 12
allele count: 1
allele frequency: 8.281436332317477e-6
allele num: 120752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1117_1119delAAT
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.958_960delAAT
  hgvsp: ENSP00000261168.4:p.Asn320del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1050_1052delAAT
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.958_960delAAT
  hgvsp: ENSP00000444589.1:p.Asn320del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1116_1118delAAT
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.982_984delAAT
  hgvsp: ENSP00000440440.1:p.Asn328del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.958_960delAAT
  hgvsp: ENSP00000379575.2:p.Asn320del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+703_255+705delAAT
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.958_960delAAT
  hgvsp: ENSP00000443179.1:p.Asn320del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.958_960delAAT
  hgvsp: ENSP00000445955.1:p.Asn320del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9464_-125-9462delAAT
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn320del
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: AAAT
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

12-14577816-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577816
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577816
    reference: chr 12
allele count: 13
allele frequency: 1.078033004395058e-4
allele num: 120590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9455G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1125G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.967G>A
  hgvsp: ENSP00000261168.4:p.Asp323Asn
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.967G>A
  hgvsp: ENSP00000443179.1:p.Asp323Asn
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1059G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1126G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.967G>A
  hgvsp: ENSP00000379575.2:p.Asp323Asn
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.991G>A
  hgvsp: ENSP00000440440.1:p.Asp331Asn
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.967G>A
  hgvsp: ENSP00000445955.1:p.Asp323Asn
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.967G>A
  hgvsp: ENSP00000444589.1:p.Asp323Asn
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+712G>A
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35993
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp323Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

12-14577818-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577818
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577818
    reference: chr 12
allele count: 1
allele frequency: 8.293524416135881e-6
allele num: 120576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.969T>A
  hgvsp: ENSP00000443179.1:p.Asp323Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.969T>A
  hgvsp: ENSP00000444589.1:p.Asp323Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1061T>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+714T>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1127T>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.993T>A
  hgvsp: ENSP00000440440.1:p.Asp331Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.969T>A
  hgvsp: ENSP00000379575.2:p.Asp323Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9453T>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.969T>A
  hgvsp: ENSP00000445955.1:p.Asp323Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.969T>A
  hgvsp: ENSP00000261168.4:p.Asp323Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1128T>A
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp323Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/12-14577840-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577840
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577840
    reference: chr 12
allele count: 1
allele frequency: 8.305509875251242e-6
allele num: 120402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.991A>C
  hgvsp: ENSP00000444589.1:p.Ser331Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1015A>C
  hgvsp: ENSP00000440440.1:p.Ser339Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.991A>C
  hgvsp: ENSP00000445955.1:p.Ser331Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9431A>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.991A>C
  hgvsp: ENSP00000379575.2:p.Ser331Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1150A>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1083A>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1149A>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.991A>C
  hgvsp: ENSP00000443179.1:p.Ser331Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.991A>C
  hgvsp: ENSP00000261168.4:p.Ser331Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+736A>C
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser331Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQ

12-14577849-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577849
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577849
    reference: chr 12
allele count: 1
allele frequency: 8.31255195344971e-6
allele num: 120300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1000T>C
  hgvsp: ENSP00000445955.1:p.Ser334Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+745T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1092T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1000T>C
  hgvsp: ENSP00000443179.1:p.Ser334Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1000T>C
  hgvsp: ENSP00000261168.4:p.Ser334Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1159T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1158T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9422T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1000T>C
  hgvsp: ENSP00000444589.1:p.Ser334Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1000T>C
  hgvsp: ENSP00000379575.2:p.Ser334Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1024T>C
  hgvsp: ENSP00000440440.1:p.Ser342Pro
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35243
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser334Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

12-14577851-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577851
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577851
    reference: chr 12
allele count: 154
allele frequency: 1.280494902965094e-3
allele num: 120266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1002A>T
  hgvsp: ENST00000540793.1:c.1002A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+747A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1002A>T
  hgvsp: ENST00000536444.1:c.1002A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1026A>T
  hgvsp: ENST00000544627.1:c.1026A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1160A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1002A>T
  hgvsp: ENST00000261168.4:c.1002A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1002A>T
  hgvsp: ENST00000543189.1:c.1002A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1094A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1002A>T
  hgvsp: ENST00000396279.2:c.1002A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9420A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1161A>T
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 35058
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13748
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: p.Ser334Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

12-14577874-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577874
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577874
    reference: chr 12
allele count: 1
allele frequency: 8.318360284820657e-6
allele num: 120216
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1025A>G
  hgvsp: ENSP00000261168.4:p.Asp342Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1049A>G
  hgvsp: ENSP00000440440.1:p.Asp350Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1184A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1183A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1025A>G
  hgvsp: ENSP00000379575.2:p.Asp342Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9397A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1025A>G
  hgvsp: ENSP00000443179.1:p.Asp342Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1025A>G
  hgvsp: ENSP00000445955.1:p.Asp342Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1025A>G
  hgvsp: ENSP00000444589.1:p.Asp342Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1117A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+770A>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp342Gly
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

12-14577876-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577876
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577876
    reference: chr 12
allele count: 2
allele frequency: 1.663976571209877e-5
allele num: 120194
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1027A>G
  hgvsp: ENSP00000261168.4:p.Asn343Asp
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1027A>G
  hgvsp: ENSP00000443179.1:p.Asn343Asp
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1027A>G
  hgvsp: ENSP00000445955.1:p.Asn343Asp
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1027A>G
  hgvsp: ENSP00000379575.2:p.Asn343Asp
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1186A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9395A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1027A>G
  hgvsp: ENSP00000444589.1:p.Asn343Asp
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1185A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1119A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1051A>G
  hgvsp: ENSP00000440440.1:p.Asn351Asp
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+772A>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn343Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

12-14577886-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577886
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577886
    reference: chr 12
allele count: 1
allele frequency: 8.316838270762986e-6
allele num: 120238
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1037A>G
  hgvsp: ENSP00000261168.4:p.Asp346Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1037A>G
  hgvsp: ENSP00000444589.1:p.Asp346Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1195A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1196A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1037A>G
  hgvsp: ENSP00000443179.1:p.Asp346Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1037A>G
  hgvsp: ENSP00000445955.1:p.Asp346Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1037A>G
  hgvsp: ENSP00000379575.2:p.Asp346Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1061A>G
  hgvsp: ENSP00000440440.1:p.Asp354Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1129A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9385A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+782A>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp346Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

12-14577892-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577892
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577892
    reference: chr 12
allele count: 46196
allele frequency: 3.839236740189153e-1
allele num: 120326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1043A>T
  hgvsp: ENSP00000445955.1:p.Asn348Ile
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+788A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1043A>T
  hgvsp: ENSP00000261168.4:p.Asn348Ile
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1067A>T
  hgvsp: ENSP00000440440.1:p.Asn356Ile
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1202A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1043A>T
  hgvsp: ENSP00000379575.2:p.Asn348Ile
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1043A>T
  hgvsp: ENSP00000443179.1:p.Asn348Ile
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1043A>T
  hgvsp: ENSP00000444589.1:p.Asn348Ile
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9379A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1201A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1135A>T
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 385
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 2.75e1
  variant carriers: 762
genotype depth: GenotypeDepth
  all individuals: 12333
  bin: 9.75e1
  variant carriers: 12247
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 8.25e1
  variant carriers: 2615
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 6.75e1
  variant carriers: 2040
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.75e1
  variant carriers: 1036
genotype depth: GenotypeDepth
  all individuals: 14378
  bin: 2.25e1
  variant carriers: 508
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 7.75e1
  variant carriers: 2504
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 3.25e1
  variant carriers: 922
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 5.75e1
  variant carriers: 1371
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 3.75e1
  variant carriers: 941
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 9.25e1
  variant carriers: 2476
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 5.25e1
  variant carriers: 1095
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 7.25e1
  variant carriers: 2435
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 6.25e1
  variant carriers: 1748
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 4.25e1
  variant carriers: 1038
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 8.75e1
  variant carriers: 2542
genotype quality: GenotypeQuality
hgvs: p.Asn348Ile
num of homozygotes: 9303
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

12-14577907-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577907
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577907
    reference: chr 12
allele count: 3
allele frequency: 2.5002500250025e-5
allele num: 119988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1150A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+803A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1058A>G
  hgvsp: ENSP00000443179.1:p.Glu353Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1216A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1058A>G
  hgvsp: ENSP00000379575.2:p.Glu353Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1058A>G
  hgvsp: ENSP00000261168.4:p.Glu353Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1082A>G
  hgvsp: ENSP00000440440.1:p.Glu361Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1058A>G
  hgvsp: ENSP00000445955.1:p.Glu353Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9364A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1217A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1058A>G
  hgvsp: ENSP00000444589.1:p.Glu353Gly
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18393
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu353Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

12-14577910-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577910
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577910
    reference: chr 12
allele count: 1
allele frequency: 8.335278231587371e-6
allele num: 119972
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1085C>G
  hgvsp: ENSP00000440440.1:p.Thr362Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1061C>G
  hgvsp: ENSP00000443179.1:p.Thr354Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1061C>G
  hgvsp: ENSP00000379575.2:p.Thr354Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9361C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1061C>G
  hgvsp: ENSP00000444589.1:p.Thr354Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1219C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1220C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1061C>G
  hgvsp: ENSP00000445955.1:p.Thr354Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1061C>G
  hgvsp: ENSP00000261168.4:p.Thr354Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1153C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+806C>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr354Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

12-14577917-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577917
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577917
    reference: chr 12
allele count: 2
allele frequency: 1.667278001934042e-5
allele num: 119956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1068T>C
  hgvsp: ENST00000540793.1:c.1068T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1068T>C
  hgvsp: ENST00000536444.1:c.1068T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1227T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1068T>C
  hgvsp: ENST00000396279.2:c.1068T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1068T>C
  hgvsp: ENST00000543189.1:c.1068T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1160T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9354T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1226T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+813T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1068T>C
  hgvsp: ENST00000261168.4:c.1068T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1092T>C
  hgvsp: ENST00000544627.1:c.1092T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp356Asp
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/12-14577919-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577919
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577919
    reference: chr 12
allele count: 1
allele frequency: 8.335834083558401e-6
allele num: 119964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1094C>A
  hgvsp: ENSP00000440440.1:p.Thr365Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9352C>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1070C>A
  hgvsp: ENSP00000379575.2:p.Thr357Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1070C>A
  hgvsp: ENSP00000445955.1:p.Thr357Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1070C>A
  hgvsp: ENSP00000443179.1:p.Thr357Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1162C>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1229C>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1070C>A
  hgvsp: ENSP00000444589.1:p.Thr357Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1070C>A
  hgvsp: ENSP00000261168.4:p.Thr357Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1228C>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+815C>A
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr357Lys
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

12-14577924-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577924
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577924
    reference: chr 12
allele count: 2
allele frequency: 1.66730580055688e-5
allele num: 119954
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1167A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1234A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1075A>G
  hgvsp: ENSP00000445955.1:p.Ile359Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1075A>G
  hgvsp: ENSP00000443179.1:p.Ile359Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1099A>G
  hgvsp: ENSP00000440440.1:p.Ile367Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9347A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1233A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1075A>G
  hgvsp: ENSP00000379575.2:p.Ile359Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1075A>G
  hgvsp: ENSP00000444589.1:p.Ile359Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+820A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1075A>G
  hgvsp: ENSP00000261168.4:p.Ile359Val
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile359Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

12-14577936-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577936
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577936
    reference: chr 12
allele count: 1
allele frequency: 8.340840089413805e-6
allele num: 119892
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1246C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1087C>G
  hgvsp: ENSP00000444589.1:p.Arg363Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1087C>G
  hgvsp: ENSP00000261168.4:p.Arg363Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9335C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+832C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1179C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1087C>G
  hgvsp: ENSP00000379575.2:p.Arg363Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1111C>G
  hgvsp: ENSP00000440440.1:p.Arg371Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1087C>G
  hgvsp: ENSP00000443179.1:p.Arg363Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1245C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1087C>G
  hgvsp: ENSP00000445955.1:p.Arg363Gly
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22797
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg363Gly
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

12-14577937-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577937
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577937
    reference: chr 12
allele count: 1
allele frequency: 8.340422692622062e-6
allele num: 119898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1112G>A
  hgvsp: ENSP00000440440.1:p.Arg371Gln
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1088G>A
  hgvsp: ENSP00000379575.2:p.Arg363Gln
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1247G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1088G>A
  hgvsp: ENSP00000445955.1:p.Arg363Gln
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1180G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1088G>A
  hgvsp: ENSP00000444589.1:p.Arg363Gln
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9334G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1088G>A
  hgvsp: ENSP00000261168.4:p.Arg363Gln
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1088G>A
  hgvsp: ENSP00000443179.1:p.Arg363Gln
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+833G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1246G>A
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg363Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-14577938-ACCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577938
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577935
    reference: chr 12
allele count: 1
allele frequency: 8.340422692622062e-6
allele num: 119898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+838_255+840delCCT
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1093_1095delCCT
  hgvsp: ENSP00000443179.1:p.Pro365del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1093_1095delCCT
  hgvsp: ENSP00000444589.1:p.Pro365del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1117_1119delCCT
  hgvsp: ENSP00000440440.1:p.Pro373del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1093_1095delCCT
  hgvsp: ENSP00000379575.2:p.Pro365del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1093_1095delCCT
  hgvsp: ENSP00000261168.4:p.Pro365del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9329_-125-9327delCCT
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1251_1253delCCT
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1252_1254delCCT
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1093_1095delCCT
  hgvsp: ENSP00000445955.1:p.Pro365del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1185_1187delCCT
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro365del
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: ACCT
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

12-14577944-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577944
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577944
    reference: chr 12
allele count: 1
allele frequency: 8.342510094437214e-6
allele num: 119868
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1253T>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1119T>G
  hgvsp: ENST00000544627.1:c.1119T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1095T>G
  hgvsp: ENST00000543189.1:c.1095T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1095T>G
  hgvsp: ENST00000261168.4:c.1095T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1187T>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9327T>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1095T>G
  hgvsp: ENST00000396279.2:c.1095T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1254T>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+840T>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1095T>G
  hgvsp: ENST00000540793.1:c.1095T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1095T>G
  hgvsp: ENST00000536444.1:c.1095T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro365Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

12-14577970-ATAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577970
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577967
    reference: chr 12
allele count: 13
allele frequency: 1.086012163336229e-4
allele num: 119704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1283_1285delTAT
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1284_1286delTAT
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1125_1127delTAT
  hgvsp: ENSP00000445955.1:p.Ile376del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1125_1127delTAT
  hgvsp: ENSP00000379575.2:p.Ile376del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9297_-125-9295delTAT
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1217_1219delTAT
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+870_255+872delTAT
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1125_1127delTAT
  hgvsp: ENSP00000444589.1:p.Ile376del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1125_1127delTAT
  hgvsp: ENSP00000261168.4:p.Ile376del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1149_1151delTAT
  hgvsp: ENSP00000440440.1:p.Ile384del
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1125_1127delTAT
  hgvsp: ENSP00000443179.1:p.Ile376del
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile376del
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: ATAT
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

12-14577971-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577971
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577971
    reference: chr 12
allele count: 3
allele frequency: 2.50681016762204e-5
allele num: 119674
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1281T>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1146T>A
  hgvsp: ENSP00000440440.1:p.Asp382Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1214T>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+867T>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1122T>A
  hgvsp: ENSP00000445955.1:p.Asp374Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9300T>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1280T>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1122T>A
  hgvsp: ENSP00000443179.1:p.Asp374Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1122T>A
  hgvsp: ENSP00000444589.1:p.Asp374Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1122T>A
  hgvsp: ENSP00000379575.2:p.Asp374Glu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1122T>A
  hgvsp: ENSP00000261168.4:p.Asp374Glu
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp374Glu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-14577977-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577977
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577977
    reference: chr 12
allele count: 2
allele frequency: 1.67372420372571e-5
allele num: 119494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1128C>T
  hgvsp: ENST00000536444.1:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1287C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1286C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1128C>T
  hgvsp: ENST00000540793.1:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1128C>T
  hgvsp: ENST00000543189.1:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+873C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1128C>T
  hgvsp: ENST00000396279.2:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1152C>T
  hgvsp: ENST00000544627.1:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1220C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9294C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1128C>T
  hgvsp: ENST00000261168.4:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9854
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile376Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum

12-14577983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577983
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577983
    reference: chr 12
allele count: 1
allele frequency: 8.374227477515199e-6
allele num: 119414
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1292G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1293G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1226G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1134G>A
  hgvsp: ENST00000540793.1:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1158G>A
  hgvsp: ENST00000544627.1:c.1158G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9288G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+879G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1134G>A
  hgvsp: ENST00000261168.4:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1134G>A
  hgvsp: ENST00000396279.2:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1134G>A
  hgvsp: ENST00000543189.1:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1134G>A
  hgvsp: ENST00000536444.1:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu378Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP

12-14577990-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577990
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577990
    reference: chr 12
allele count: 1
allele frequency: 8.386166180269028e-6
allele num: 119244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1141C>T
  hgvsp: ENSP00000379575.2:p.Leu381Phe
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1141C>T
  hgvsp: ENSP00000443179.1:p.Leu381Phe
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1300C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1141C>T
  hgvsp: ENSP00000444589.1:p.Leu381Phe
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1141C>T
  hgvsp: ENSP00000445955.1:p.Leu381Phe
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1233C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+886C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1141C>T
  hgvsp: ENSP00000261168.4:p.Leu381Phe
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9281C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1299C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1165C>T
  hgvsp: ENSP00000440440.1:p.Leu389Phe
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu381Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

12-14577991-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577991
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577991
    reference: chr 12
allele count: 2
allele frequency: 1.677373903416811e-5
allele num: 119234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1234T>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1142T>G
  hgvsp: ENSP00000443179.1:p.Leu381Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1300T>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9280T>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1142T>G
  hgvsp: ENSP00000445955.1:p.Leu381Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1142T>G
  hgvsp: ENSP00000261168.4:p.Leu381Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1301T>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1166T>G
  hgvsp: ENSP00000440440.1:p.Leu389Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1142T>G
  hgvsp: ENSP00000444589.1:p.Leu381Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1142T>G
  hgvsp: ENSP00000379575.2:p.Leu381Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+887T>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu381Arg
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD

12-14577996-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14577996
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14577996
    reference: chr 12
allele count: 2
allele frequency: 1.679063754050741e-5
allele num: 119114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1147G>A
  hgvsp: ENSP00000444589.1:p.Glu383Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1171G>A
  hgvsp: ENSP00000440440.1:p.Glu391Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1239G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1147G>A
  hgvsp: ENSP00000379575.2:p.Glu383Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1306G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1147G>A
  hgvsp: ENSP00000443179.1:p.Glu383Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+892G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1147G>A
  hgvsp: ENSP00000261168.4:p.Glu383Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1147G>A
  hgvsp: ENSP00000445955.1:p.Glu383Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9275G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1305G>A
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu383Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/12-14578005-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578005
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578005
    reference: chr 12
allele count: 1
allele frequency: 8.407883231317684e-6
allele num: 118936
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1156A>C
  hgvsp: ENSP00000444589.1:p.Ile386Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1315A>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1156A>C
  hgvsp: ENSP00000443179.1:p.Ile386Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1248A>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1180A>C
  hgvsp: ENSP00000440440.1:p.Ile394Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1314A>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1156A>C
  hgvsp: ENSP00000379575.2:p.Ile386Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1156A>C
  hgvsp: ENSP00000261168.4:p.Ile386Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+901A>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9266A>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1156A>C
  hgvsp: ENSP00000445955.1:p.Ile386Leu
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile386Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

12-14578005-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578005
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578005
    reference: chr 12
allele count: 1
allele frequency: 8.407883231317684e-6
allele num: 118936
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1180A>G
  hgvsp: ENSP00000440440.1:p.Ile394Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9266A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1314A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1156A>G
  hgvsp: ENSP00000444589.1:p.Ile386Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1156A>G
  hgvsp: ENSP00000379575.2:p.Ile386Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1315A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1156A>G
  hgvsp: ENSP00000443179.1:p.Ile386Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1156A>G
  hgvsp: ENSP00000445955.1:p.Ile386Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1156A>G
  hgvsp: ENSP00000261168.4:p.Ile386Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1248A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+901A>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile386Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS

12-14578009-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578009
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578009
    reference: chr 12
allele count: 1
allele frequency: 8.414391976035812e-6
allele num: 118844
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+905C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1160C>G
  hgvsp: ENSP00000444589.1:p.Ser387Cys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9262C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1319C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1160C>G
  hgvsp: ENSP00000261168.4:p.Ser387Cys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1160C>G
  hgvsp: ENSP00000379575.2:p.Ser387Cys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1252C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1160C>G
  hgvsp: ENSP00000445955.1:p.Ser387Cys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1318C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1184C>G
  hgvsp: ENSP00000440440.1:p.Ser395Cys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1160C>G
  hgvsp: ENSP00000443179.1:p.Ser387Cys
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser387Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

12-14578014-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578014
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578014
    reference: chr 12
allele count: 1
allele frequency: 8.41864224137931e-6
allele num: 118784
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1189A>G
  hgvsp: ENSP00000440440.1:p.Ser397Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1257A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1165A>G
  hgvsp: ENSP00000379575.2:p.Ser389Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1165A>G
  hgvsp: ENSP00000443179.1:p.Ser389Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1323A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1165A>G
  hgvsp: ENSP00000445955.1:p.Ser389Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9257A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1165A>G
  hgvsp: ENSP00000444589.1:p.Ser389Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+910A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1165A>G
  hgvsp: ENSP00000261168.4:p.Ser389Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1324A>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser389Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

12-14578016-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578016
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578016
    reference: chr 12
allele count: 2
allele frequency: 1.683785149014986e-5
allele num: 118780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1325T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9255T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1167T>C
  hgvsp: ENST00000261168.4:c.1167T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1167T>C
  hgvsp: ENST00000536444.1:c.1167T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1326T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1167T>C
  hgvsp: ENST00000543189.1:c.1167T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1259T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1167T>C
  hgvsp: ENST00000396279.2:c.1167T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+912T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1167T>C
  hgvsp: ENST00000540793.1:c.1167T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1191T>C
  hgvsp: ENST00000544627.1:c.1191T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser389Ser
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

12-14578018-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578018
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578018
    reference: chr 12
allele count: 1
allele frequency: 8.422187410514259e-6
allele num: 118734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1169T>C
  hgvsp: ENSP00000445955.1:p.Met390Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1169T>C
  hgvsp: ENSP00000444589.1:p.Met390Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1169T>C
  hgvsp: ENSP00000261168.4:p.Met390Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1261T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1169T>C
  hgvsp: ENSP00000379575.2:p.Met390Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1328T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1193T>C
  hgvsp: ENSP00000440440.1:p.Met398Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1169T>C
  hgvsp: ENSP00000443179.1:p.Met390Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+914T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9253T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1327T>C
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Met390Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-14578032-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578032
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578032
    reference: chr 12
allele count: 1
allele frequency: 8.43540169382866e-6
allele num: 118548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1183G>C
  hgvsp: ENSP00000444589.1:p.Gly395Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1183G>C
  hgvsp: ENSP00000379575.2:p.Gly395Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1183G>C
  hgvsp: ENSP00000445955.1:p.Gly395Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1183G>C
  hgvsp: ENSP00000443179.1:p.Gly395Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1207G>C
  hgvsp: ENSP00000440440.1:p.Gly403Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1341G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1342G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1275G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+928G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1183G>C
  hgvsp: ENSP00000261168.4:p.Gly395Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9239G>C
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly395Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

12-14578042-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578042
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578042
    reference: chr 12
allele count: 4
allele frequency: 3.376667229444538e-5
allele num: 118460
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1193A>G
  hgvsp: ENSP00000444589.1:p.Asn398Ser
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1285A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1193A>G
  hgvsp: ENSP00000379575.2:p.Asn398Ser
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1193A>G
  hgvsp: ENSP00000261168.4:p.Asn398Ser
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+938A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1217A>G
  hgvsp: ENSP00000440440.1:p.Asn406Ser
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1351A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1193A>G
  hgvsp: ENSP00000443179.1:p.Asn398Ser
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9229A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1352A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1193A>G
  hgvsp: ENSP00000445955.1:p.Asn398Ser
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17622
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn398Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

12-14578065-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578065
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578065
    reference: chr 12
allele count: 1
allele frequency: 8.457660949287865e-6
allele num: 118236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+961C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1216C>G
  hgvsp: ENSP00000444589.1:p.Leu406Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1240C>G
  hgvsp: ENSP00000440440.1:p.Leu414Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1375C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1216C>G
  hgvsp: ENSP00000379575.2:p.Leu406Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1216C>G
  hgvsp: ENSP00000261168.4:p.Leu406Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1216C>G
  hgvsp: ENSP00000443179.1:p.Leu406Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1216C>G
  hgvsp: ENSP00000445955.1:p.Leu406Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1374C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9206C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1308C>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9333
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu406Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

12-14578068-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578068
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578068
    reference: chr 12
allele count: 1
allele frequency: 8.449514152936206e-6
allele num: 118350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1243G>C
  hgvsp: ENSP00000440440.1:p.Val415Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1219G>C
  hgvsp: ENSP00000444589.1:p.Val407Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1219G>C
  hgvsp: ENSP00000445955.1:p.Val407Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1377G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1219G>C
  hgvsp: ENSP00000379575.2:p.Val407Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1219G>C
  hgvsp: ENSP00000443179.1:p.Val407Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1378G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1219G>C
  hgvsp: ENSP00000261168.4:p.Val407Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9203G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+964G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1311G>C
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val407Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

12-14578075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578075
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578075
    reference: chr 12
allele count: 2
allele frequency: 1.69030273321952e-5
allele num: 118322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1318C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1384C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1226C>T
  hgvsp: ENSP00000379575.2:p.Thr409Met
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1226C>T
  hgvsp: ENSP00000445955.1:p.Thr409Met
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9196C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1250C>T
  hgvsp: ENSP00000440440.1:p.Thr417Met
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+971C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1226C>T
  hgvsp: ENSP00000444589.1:p.Thr409Met
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1226C>T
  hgvsp: ENSP00000261168.4:p.Thr409Met
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1226C>T
  hgvsp: ENSP00000443179.1:p.Thr409Met
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1385C>T
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20513
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr409Met
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

12-14578076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578076
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578076
    reference: chr 12
allele count: 16
allele frequency: 1.35112312109441e-4
allele num: 118420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1319G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1227G>A
  hgvsp: ENST00000536444.1:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1227G>A
  hgvsp: ENST00000543189.1:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9195G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+972G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1385G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1386G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1227G>A
  hgvsp: ENST00000396279.2:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1227G>A
  hgvsp: ENST00000261168.4:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1227G>A
  hgvsp: ENST00000540793.1:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1251G>A
  hgvsp: ENST00000544627.1:c.1251G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Thr409Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

12-14578083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578083
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578083
    reference: chr 12
allele count: 11
allele frequency: 9.281290605646399e-5
allele num: 118518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1258G>A
  hgvsp: ENSP00000440440.1:p.Glu420Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1234G>A
  hgvsp: ENSP00000261168.4:p.Glu412Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1234G>A
  hgvsp: ENSP00000445955.1:p.Glu412Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1392G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1234G>A
  hgvsp: ENSP00000379575.2:p.Glu412Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9188G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1326G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1234G>A
  hgvsp: ENSP00000443179.1:p.Glu412Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+979G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1234G>A
  hgvsp: ENSP00000444589.1:p.Glu412Lys
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1393G>A
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18533
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu412Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS

12-14578086-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578086
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578086
    reference: chr 12
allele count: 3
allele frequency: 2.530150965674285e-5
allele num: 118570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1237A>G
  hgvsp: ENSP00000445955.1:p.Asn413Asp
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1396A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1237A>G
  hgvsp: ENSP00000443179.1:p.Asn413Asp
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1237A>G
  hgvsp: ENSP00000444589.1:p.Asn413Asp
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9185A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1329A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1237A>G
  hgvsp: ENSP00000379575.2:p.Asn413Asp
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1395A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1261A>G
  hgvsp: ENSP00000440440.1:p.Asn421Asp
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1237A>G
  hgvsp: ENSP00000261168.4:p.Asn413Asp
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+982A>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9086
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn413Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

12-14578089-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578089
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578089
    reference: chr 12
allele count: 1
allele frequency: 8.43355204344966e-6
allele num: 118574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1240G>T
  hgvsp: ENSP00000445955.1:p.Val414Phe
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1240G>T
  hgvsp: ENSP00000443179.1:p.Val414Phe
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1398G>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1240G>T
  hgvsp: ENSP00000444589.1:p.Val414Phe
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1240G>T
  hgvsp: ENSP00000261168.4:p.Val414Phe
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9182G>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1240G>T
  hgvsp: ENSP00000379575.2:p.Val414Phe
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1332G>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1399G>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+985G>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1264G>T
  hgvsp: ENSP00000440440.1:p.Val422Phe
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val414Phe
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

12-14578093-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578093
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578093
    reference: chr 12
allele count: 1
allele frequency: 8.428292090890703e-6
allele num: 118648
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1268T>C
  hgvsp: ENSP00000440440.1:p.Ile423Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1244T>C
  hgvsp: ENSP00000379575.2:p.Ile415Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1244T>C
  hgvsp: ENSP00000444589.1:p.Ile415Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1403T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1336T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1244T>C
  hgvsp: ENSP00000445955.1:p.Ile415Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1402T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9178T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1244T>C
  hgvsp: ENSP00000443179.1:p.Ile415Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1244T>C
  hgvsp: ENSP00000261168.4:p.Ile415Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+989T>C
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9023
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile415Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

12-14578116-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578116
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578116
    reference: chr 12
allele count: 1
allele frequency: 8.420059950826851e-6
allele num: 118764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1426A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1267A>G
  hgvsp: ENSP00000444589.1:p.Ile423Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1267A>G
  hgvsp: ENSP00000445955.1:p.Ile423Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1359A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1012A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1267A>G
  hgvsp: ENSP00000261168.4:p.Ile423Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1267A>G
  hgvsp: ENSP00000379575.2:p.Ile423Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1267A>G
  hgvsp: ENSP00000443179.1:p.Ile423Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1291A>G
  hgvsp: ENSP00000440440.1:p.Ile431Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1425A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9155A>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile423Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

12-14578120-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578120
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578120
    reference: chr 12
allele count: 1
allele frequency: 8.419209267865562e-6
allele num: 118776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1430T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1295T>C
  hgvsp: ENSP00000440440.1:p.Leu432Ser
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1363T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1271T>C
  hgvsp: ENSP00000445955.1:p.Leu424Ser
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1271T>C
  hgvsp: ENSP00000379575.2:p.Leu424Ser
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1271T>C
  hgvsp: ENSP00000444589.1:p.Leu424Ser
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9151T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1271T>C
  hgvsp: ENSP00000261168.4:p.Leu424Ser
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1016T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1429T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1271T>C
  hgvsp: ENSP00000443179.1:p.Leu424Ser
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu424Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

12-14578130-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578130
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578130
    reference: chr 12
allele count: 2
allele frequency: 1.683870207284422e-5
allele num: 118774
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1281A>G
  hgvsp: ENST00000536444.1:c.1281A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1281A>G
  hgvsp: ENST00000261168.4:c.1281A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1439A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1281A>G
  hgvsp: ENST00000543189.1:c.1281A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1305A>G
  hgvsp: ENST00000544627.1:c.1305A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1440A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1281A>G
  hgvsp: ENST00000540793.1:c.1281A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1373A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1281A>G
  hgvsp: ENST00000396279.2:c.1281A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1026A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9141A>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr427Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

12-14578131-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578131
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578131
    reference: chr 12
allele count: 1
allele frequency: 8.418925745074929e-6
allele num: 118780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1306G>A
  hgvsp: ENSP00000440440.1:p.Asp436Asn
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1027G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1441G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1282G>A
  hgvsp: ENSP00000443179.1:p.Asp428Asn
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1282G>A
  hgvsp: ENSP00000379575.2:p.Asp428Asn
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1282G>A
  hgvsp: ENSP00000444589.1:p.Asp428Asn
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1440G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1282G>A
  hgvsp: ENSP00000261168.4:p.Asp428Asn
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1282G>A
  hgvsp: ENSP00000445955.1:p.Asp428Asn
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1374G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9140G>A
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp428Asn
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

12-14578137-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578137
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578137
    reference: chr 12
allele count: 3
allele frequency: 2.526017985248055e-5
allele num: 118764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1288A>G
  hgvsp: ENSP00000379575.2:p.Met430Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1447A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9134A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1288A>G
  hgvsp: ENSP00000261168.4:p.Met430Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1380A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1033A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1312A>G
  hgvsp: ENSP00000440440.1:p.Met438Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1288A>G
  hgvsp: ENSP00000443179.1:p.Met430Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1288A>G
  hgvsp: ENSP00000444589.1:p.Met430Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1288A>G
  hgvsp: ENSP00000445955.1:p.Met430Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1446A>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20676
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met430Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-14578143-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578143
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578143
    reference: chr 12
allele count: 1
allele frequency: 8.416233230655287e-6
allele num: 118818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1452A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1294A>G
  hgvsp: ENSP00000443179.1:p.Thr432Ala
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1386A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1294A>G
  hgvsp: ENSP00000261168.4:p.Thr432Ala
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1294A>G
  hgvsp: ENSP00000445955.1:p.Thr432Ala
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1453A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1294A>G
  hgvsp: ENSP00000379575.2:p.Thr432Ala
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1318A>G
  hgvsp: ENSP00000440440.1:p.Thr440Ala
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1294A>G
  hgvsp: ENSP00000444589.1:p.Thr432Ala
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1039A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9128A>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr432Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

12-14578176-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578176
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578176
    reference: chr 12
allele count: 1
allele frequency: 8.43810648890389e-6
allele num: 118510
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1327G>A
  hgvsp: ENSP00000444589.1:p.Ala443Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1327G>A
  hgvsp: ENSP00000445955.1:p.Ala443Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1486G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1327G>A
  hgvsp: ENSP00000443179.1:p.Ala443Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1072G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1419G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9095G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1327G>A
  hgvsp: ENSP00000379575.2:p.Ala443Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1351G>A
  hgvsp: ENSP00000440440.1:p.Ala451Thr
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1485G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1327G>A
  hgvsp: ENSP00000261168.4:p.Ala443Thr
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala443Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

12-14578177-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578177
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578177
    reference: chr 12
allele count: 1
allele frequency: 8.448086508405846e-6
allele num: 118370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1328C>T
  hgvsp: ENSP00000445955.1:p.Ala443Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1328C>T
  hgvsp: ENSP00000443179.1:p.Ala443Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1073C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1328C>T
  hgvsp: ENSP00000379575.2:p.Ala443Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1420C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1352C>T
  hgvsp: ENSP00000440440.1:p.Ala451Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9094C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1328C>T
  hgvsp: ENSP00000444589.1:p.Ala443Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1486C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1487C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1328C>T
  hgvsp: ENSP00000261168.4:p.Ala443Val
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala443Val
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

12-14578192-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578192
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578192
    reference: chr 12
allele count: 5
allele frequency: 4.215496163898491e-5
allele num: 118610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1343A>T
  hgvsp: ENSP00000444589.1:p.Glu448Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9079A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1435A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1343A>T
  hgvsp: ENSP00000379575.2:p.Glu448Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1367A>T
  hgvsp: ENSP00000440440.1:p.Glu456Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1343A>T
  hgvsp: ENSP00000261168.4:p.Glu448Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1088A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1502A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1343A>T
  hgvsp: ENSP00000445955.1:p.Glu448Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1343A>T
  hgvsp: ENSP00000443179.1:p.Glu448Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1501A>T
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu448Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

12-14578199-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578199
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578199
    reference: chr 12
allele count: 1
allele frequency: 8.424883736604435e-6
allele num: 118696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1350T>A
  hgvsp: ENST00000540793.1:c.1350T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1350T>A
  hgvsp: ENST00000543189.1:c.1350T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1509T>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1350T>A
  hgvsp: ENST00000536444.1:c.1350T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1350T>A
  hgvsp: ENST00000261168.4:c.1350T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9072T>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1442T>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1350T>A
  hgvsp: ENST00000396279.2:c.1350T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1508T>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1095T>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1374T>A
  hgvsp: ENST00000544627.1:c.1374T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr450Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

12-14578199-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578199
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578199
    reference: chr 12
allele count: 1
allele frequency: 8.424883736604435e-6
allele num: 118696
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1350T>C
  hgvsp: ENST00000540793.1:c.1350T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1509T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1350T>C
  hgvsp: ENST00000536444.1:c.1350T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1508T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1350T>C
  hgvsp: ENST00000261168.4:c.1350T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1350T>C
  hgvsp: ENST00000543189.1:c.1350T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1442T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1374T>C
  hgvsp: ENST00000544627.1:c.1374T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9072T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1350T>C
  hgvsp: ENST00000396279.2:c.1350T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1095T>C
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr450Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

12-14578206-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578206
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578206
    reference: chr 12
allele count: 1
allele frequency: 8.418217021634817e-6
allele num: 118790
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1102T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1357T>C
  hgvsp: ENSP00000379575.2:p.Ser453Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1357T>C
  hgvsp: ENSP00000445955.1:p.Ser453Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1381T>C
  hgvsp: ENSP00000440440.1:p.Ser461Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9065T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1357T>C
  hgvsp: ENSP00000444589.1:p.Ser453Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1357T>C
  hgvsp: ENSP00000443179.1:p.Ser453Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1357T>C
  hgvsp: ENSP00000261168.4:p.Ser453Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1449T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1515T>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1516T>C
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser453Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

12-14578214-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578214
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578214
    reference: chr 12
allele count: 5
allele frequency: 4.202810839889718e-5
allele num: 118968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1524A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1389A>T
  hgvsp: ENST00000544627.1:c.1389A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1365A>T
  hgvsp: ENST00000540793.1:c.1365A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1457A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1110A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1365A>T
  hgvsp: ENST00000396279.2:c.1365A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1365A>T
  hgvsp: ENST00000261168.4:c.1365A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1365A>T
  hgvsp: ENST00000543189.1:c.1365A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9057A>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1365A>T
  hgvsp: ENST00000536444.1:c.1365A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1523A>T
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19626
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr455Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-14578219-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578219
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578219
    reference: chr 12
allele count: 1
allele frequency: 8.397010664203544e-6
allele num: 119090
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1370T>G
  hgvsp: ENSP00000379575.2:p.Leu457Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1370T>G
  hgvsp: ENSP00000445955.1:p.Leu457Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1462T>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9052T>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1529T>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1370T>G
  hgvsp: ENSP00000261168.4:p.Leu457Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1370T>G
  hgvsp: ENSP00000443179.1:p.Leu457Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1394T>G
  hgvsp: ENSP00000440440.1:p.Leu465Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1370T>G
  hgvsp: ENSP00000444589.1:p.Leu457Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1115T>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1528T>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu457Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

12-14578220-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578220
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578220
    reference: chr 12
allele count: 1
allele frequency: 8.396164631996104e-6
allele num: 119102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1371C>G
  hgvsp: ENST00000396279.2:c.1371C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9051C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1371C>G
  hgvsp: ENST00000536444.1:c.1371C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1395C>G
  hgvsp: ENST00000544627.1:c.1395C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1371C>G
  hgvsp: ENST00000540793.1:c.1371C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1371C>G
  hgvsp: ENST00000543189.1:c.1371C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1463C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1116C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1371C>G
  hgvsp: ENST00000261168.4:c.1371C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1529C>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1530C>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu457Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

12-14578220-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578220
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578220
    reference: chr 12
allele count: 297
allele frequency: 2.493660895702843e-3
allele num: 119102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1463C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1371C>T
  hgvsp: ENST00000543189.1:c.1371C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1371C>T
  hgvsp: ENST00000540793.1:c.1371C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1530C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1529C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1395C>T
  hgvsp: ENST00000544627.1:c.1395C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1371C>T
  hgvsp: ENST00000536444.1:c.1371C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1371C>T
  hgvsp: ENST00000396279.2:c.1371C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1116C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1371C>T
  hgvsp: ENST00000261168.4:c.1371C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9051C>T
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 19803
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20903
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
hgvs: p.Leu457Leu
num of homozygotes: 3
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

12-14578227-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578227
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578227
    reference: chr 12
allele count: 1
allele frequency: 8.371423309391063e-6
allele num: 119454
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1378A>G
  hgvsp: ENSP00000445955.1:p.Ile460Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1378A>G
  hgvsp: ENSP00000444589.1:p.Ile460Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1537A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1470A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1378A>G
  hgvsp: ENSP00000443179.1:p.Ile460Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1378A>G
  hgvsp: ENSP00000261168.4:p.Ile460Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1378A>G
  hgvsp: ENSP00000379575.2:p.Ile460Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1536A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9044A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1402A>G
  hgvsp: ENSP00000440440.1:p.Ile468Val
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1123A>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile460Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

12-14578229-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578229
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578229
    reference: chr 12
allele count: 5
allele frequency: 4.184870854885418e-5
allele num: 119478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1380C>T
  hgvsp: ENST00000543189.1:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1380C>T
  hgvsp: ENST00000261168.4:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1380C>T
  hgvsp: ENST00000536444.1:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1472C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1538C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1380C>T
  hgvsp: ENST00000396279.2:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1404C>T
  hgvsp: ENST00000544627.1:c.1404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1380C>T
  hgvsp: ENST00000540793.1:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1539C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9042C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1125C>T
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile460Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

12-14578250-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578250
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578250
    reference: chr 12
allele count: 1
allele frequency: 8.307579835842223e-6
allele num: 120372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1425G>A
  hgvsp: ENST00000544627.1:c.1425G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1146G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1401G>A
  hgvsp: ENST00000261168.4:c.1401G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1401G>A
  hgvsp: ENST00000540793.1:c.1401G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9021G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1559G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1401G>A
  hgvsp: ENST00000396279.2:c.1401G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1401G>A
  hgvsp: ENST00000543189.1:c.1401G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1493G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1560G>A
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1401G>A
  hgvsp: ENST00000536444.1:c.1401G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu467Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

12-14578254-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578254
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578254
    reference: chr 12
allele count: 3
allele frequency: 2.489585235099832e-5
allele num: 120502
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1497G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9017G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1405G>C
  hgvsp: ENSP00000443179.1:p.Glu469Gln
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1150G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1405G>C
  hgvsp: ENSP00000444589.1:p.Glu469Gln
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1563G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1429G>C
  hgvsp: ENSP00000440440.1:p.Glu477Gln
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1405G>C
  hgvsp: ENSP00000261168.4:p.Glu469Gln
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1405G>C
  hgvsp: ENSP00000379575.2:p.Glu469Gln
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1564G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1405G>C
  hgvsp: ENSP00000445955.1:p.Glu469Gln
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu469Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

12-14578266-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578266
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578266
    reference: chr 12
allele count: 4
allele frequency: 3.313452617627568e-5
allele num: 120720
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1575A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1576A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1441A>G
  hgvsp: ENSP00000440440.1:p.Ser481Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1417A>G
  hgvsp: ENSP00000444589.1:p.Ser473Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1509A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1417A>G
  hgvsp: ENSP00000261168.4:p.Ser473Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1417A>G
  hgvsp: ENSP00000445955.1:p.Ser473Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1417A>G
  hgvsp: ENSP00000443179.1:p.Ser473Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1417A>G
  hgvsp: ENSP00000379575.2:p.Ser473Gly
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-9005A>G
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1162A>G
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser473Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

12-14578275-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578275
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578275
    reference: chr 12
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1450G>C
  hgvsp: ENSP00000440440.1:p.Gly484Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1426G>C
  hgvsp: ENSP00000444589.1:p.Gly476Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1584G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1426G>C
  hgvsp: ENSP00000261168.4:p.Gly476Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1171G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1426G>C
  hgvsp: ENSP00000445955.1:p.Gly476Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1426G>C
  hgvsp: ENSP00000379575.2:p.Gly476Arg
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-8996G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1585G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1518G>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1426G>C
  hgvsp: ENSP00000443179.1:p.Gly476Arg
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly476Arg
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

12-14578279-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578279
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578279
    reference: chr 12
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1430C>T
  hgvsp: ENSP00000444589.1:p.Ser477Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1454C>T
  hgvsp: ENSP00000440440.1:p.Ser485Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1430C>T
  hgvsp: ENSP00000443179.1:p.Ser477Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1522C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1430C>T
  hgvsp: ENSP00000445955.1:p.Ser477Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1430C>T
  hgvsp: ENSP00000379575.2:p.Ser477Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1430C>T
  hgvsp: ENSP00000261168.4:p.Ser477Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1589C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-8992C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1588C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1175C>T
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser477Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

12-14578282-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578282
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578282
    reference: chr 12
allele count: 1
allele frequency: 8.283768783445716e-6
allele num: 120718
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1433C>T
  hgvsp: ENSP00000261168.4:p.Pro478Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-8989C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1178C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1433C>T
  hgvsp: ENSP00000445955.1:p.Pro478Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1433C>T
  hgvsp: ENSP00000444589.1:p.Pro478Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1433C>T
  hgvsp: ENSP00000379575.2:p.Pro478Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1592C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1457C>T
  hgvsp: ENSP00000440440.1:p.Pro486Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1591C>T
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1433C>T
  hgvsp: ENSP00000443179.1:p.Pro478Leu
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1525C>T
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21600
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro478Leu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/12-14578291-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 14578291
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 14578291
    reference: chr 12
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000261168
  ensembl transcript: ENST00000261168
  gene symbol: ATF7IP
  hgvsc: ENST00000261168.4:c.1442A>C
  hgvsp: ENSP00000261168.4:p.Gln481Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440587
  ensembl transcript: ENST00000538511
  gene symbol: ATF7IP
  hgvsc: ENST00000538511.1:c.-125-8980A>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444620
  ensembl transcript: ENST00000545723
  gene symbol: ATF7IP
  hgvsc: ENST00000545723.1:c.255+1187A>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000539659
  gene symbol: ATF7IP
  hgvsc: ENST00000539659.1:n.1601A>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000440440
  ensembl transcript: ENST00000544627
  gene symbol: ATF7IP
  hgvsc: ENST00000544627.1:c.1466A>C
  hgvsp: ENSP00000440440.1:p.Gln489Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000444589
  ensembl transcript: ENST00000540793
  gene symbol: ATF7IP
  hgvsc: ENST00000540793.1:c.1442A>C
  hgvsp: ENSP00000444589.1:p.Gln481Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000443179
  ensembl transcript: ENST00000543189
  gene symbol: ATF7IP
  hgvsc: ENST00000543189.1:c.1442A>C
  hgvsp: ENSP00000443179.1:p.Gln481Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000537653
  gene symbol: ATF7IP
  hgvsc: ENST00000537653.1:n.1600A>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000379575
  ensembl transcript: ENST00000396279
  gene symbol: ATF7IP
  hgvsc: ENST00000396279.2:c.1442A>C
  hgvsp: ENSP00000379575.2:p.Gln481Pro
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171681
  ensembl transcript: ENST00000541654
  gene symbol: ATF7IP
  hgvsc: ENST00000541654.1:n.1534A>C
  variant of: http://identifiers.org/hgnc/20092
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171681
  ensembl protein: ENSP00000445955
  ensembl transcript: ENST00000536444
  gene symbol: ATF7IP
  hgvsc: ENST00000536444.1:c.1442A>C
  hgvsp: ENSP00000445955.1:p.Gln481Pro
  variant of: http://identifiers.org/hgnc/20092
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln481Pro
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40489
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1841
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3224
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 6620
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 1.154313487241798e-3
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

QD
type: SiteQuality
SIO_000300: 1.515e1

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.553626e6

FS
type: SiteQuality
SIO_000300: 5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3213
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1841
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6620
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66524
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.321e1

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

MQ
type: SiteQuality
SIO_000300: 5.745e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.267e0

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 1.552445e6

GenotypeQuality
all individuals: 258
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39936
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2814
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6590
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2431
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3228
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 7.917174177831912e-4
allele num: 16420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.038e0

QD
type: SiteQuality
SIO_000300: 1.252e1

FS
type: SiteQuality
SIO_000300: 5.27e-1

DP
type: SiteQuality
SIO_000300: 1.54972e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39846
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2809
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3223
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: -7.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.66e0

FS
type: SiteQuality
SIO_000300: 1.1959e1

DP
type: SiteQuality
SIO_000300: 1.548819e6

VQSLOD
type: SiteQuality
SIO_000300: -6.468e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

QD
type: SiteQuality
SIO_000300: 1.514e1

GenotypeQuality
all individuals: 101
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39253
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6567
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2832
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3232
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506296318611797e-5
allele num: 66388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.45e-1

DP
type: SiteQuality
SIO_000300: 1.545415e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.657e1

MQ
type: SiteQuality
SIO_000300: 5.989e1

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3239
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 393
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6558
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1882
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38763
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507159005275056e-5
allele num: 66350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

QD
type: SiteQuality
SIO_000300: 2.777e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

VQSLOD
type: SiteQuality
SIO_000300: -2.226e0

DP
type: SiteQuality
SIO_000300: 1.544471e6

FS
type: SiteQuality
SIO_000300: 6.701e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.919e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

GenotypeQuality
all individuals: 379
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3384
bin: 9.75e1
variant carriers: 154

GenotypeQuality
all individuals: 422
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 186
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38522
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6531
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.466805338880222e-4
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 149
allele frequency: 1.502016129032258e-2
allele num: 9920
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66330
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.85e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e-1

QD
type: SiteQuality
SIO_000300: 1.489e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

DP
type: SiteQuality
SIO_000300: 1.550944e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39207
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3280
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 178
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1917
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2897
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6683
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507567991316408e-5
allele num: 66332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.301e1

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.406e-1

DP
type: SiteQuality
SIO_000300: 1.551847e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

FS
type: SiteQuality
SIO_000300: 1.185e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.76e-1

GenotypeQuality
all individuals: 286
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2904
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variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.5e0
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GenotypeQuality
all individuals: 113
bin: 5.75e1
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GenotypeQuality
all individuals: 707
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 1915
bin: 8.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39211
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3282
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507886245061673e-5
allele num: 66318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e0

VQSLOD
type: SiteQuality
SIO_000300: -7.1e-1

DP
type: SiteQuality
SIO_000300: 1.552355e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.514e1

GenotypeQuality
all individuals: 645
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39461
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variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
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variant carriers: 0

GenotypeQuality
all individuals: 146
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1924
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variant carriers: 0

GenotypeQuality
all individuals: 110
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variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2506
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2930
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3286
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6738
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507522537461935e-5
allele num: 66334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e0

MQRankSum
type: SiteQuality
SIO_000300: -3.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 1.556034e6

FS
type: SiteQuality
SIO_000300: 2.201e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.149e0

QD
type: SiteQuality
SIO_000300: 1.681e1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e-1

GenotypeQuality
all individuals: 92
bin: 3.75e1
variant carriers: 29

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 28

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 13

GenotypeQuality
all individuals: 37241
bin: 9.75e1
variant carriers: 36293

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 29

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 7

GenotypeQuality
all individuals: 17475
bin: 6.25e1
variant carriers: 51

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 37

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 8

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 345
bin: 9.25e1
variant carriers: 102

GenotypeQuality
all individuals: 106
bin: 2.75e1
variant carriers: 10

GenotypeQuality
all individuals: 742
bin: 7.25e1
variant carriers: 40

GenotypeQuality
all individuals: 98
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 522
bin: 8.25e1
variant carriers: 85

GenotypeQuality
all individuals: 384
bin: 2.25e1
variant carriers: 14

GenotypeQuality
all individuals: 791
bin: 7.75e1
variant carriers: 82

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 22

GenotypeQuality
all individuals: 2199
bin: 6.75e1
variant carriers: 62

GenotypeQuality
all individuals: 252
bin: 8.75e1
variant carriers: 68

East Asian
type: Population
allele count: 2926
allele frequency: 3.394431554524362e-1
allele num: 8620
num of homozygotes: 502

European (Non-Finnish)
type: Population
allele count: 26458
allele frequency: 3.987521099590065e-1
allele num: 66352
num of homozygotes: 5238

South Asian
type: Population
allele count: 7048
allele frequency: 4.287626231901691e-1
allele num: 16438
num of homozygotes: 1552

African
type: Population
allele count: 1350
allele frequency: 1.368613138686131e-1
allele num: 9864
num of homozygotes: 92

European (Finnish)
type: Population
allele count: 2158
allele frequency: 3.266727217680896e-1
allele num: 6606
num of homozygotes: 330

Latino
type: Population
allele count: 5889
allele frequency: 5.104004160166407e-1
allele num: 11538
num of homozygotes: 1510

Other
type: Population
allele count: 367
allele frequency: 4.041850220264317e-1
allele num: 908
num of homozygotes: 79

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.136e0

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.49e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 5.83e0

DP
type: SiteQuality
SIO_000300: 3.720127e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.93e-1

QD
type: SiteQuality
SIO_000300: 1.912e1

GenotypeQuality
all individuals: 1970
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
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variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3079
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7816
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4243
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37377
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.829045238385563e-4
allele num: 16402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-1

QD
type: SiteQuality
SIO_000300: 1.502e1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

FS
type: SiteQuality
SIO_000300: 1.512e0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e-2

DP
type: SiteQuality
SIO_000300: 1.73621e6

GenotypeQuality
all individuals: 7817
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 841
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variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4241
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1969
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3075
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37324
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.736228e6

VQSLOD
type: SiteQuality
SIO_000300: -1.522e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.66e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 1.2292e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e0

QD
type: SiteQuality
SIO_000300: 1.472e1

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37376
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4241
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.219363492257042e-4
allele num: 16402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 2.237e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 1.736114e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: 3.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

QD
type: SiteQuality
SIO_000300: 9.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37403
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7828
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 9.25e1
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GenotypeQuality
all individuals: 2582
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3066
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4239
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 841
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 4.116e0

VQSLOD
type: SiteQuality
SIO_000300: 9.06e-1

DP
type: SiteQuality
SIO_000300: 1.736153e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.667e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

QD
type: SiteQuality
SIO_000300: 1.044e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4237
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37326
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7826
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.026634382566586e-5
allele num: 66080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.58e0

QD
type: SiteQuality
SIO_000300: 1.249e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.998e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.735579e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.05e-1

GenotypeQuality
all individuals: 756
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37198
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variant carriers: 0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4236
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1968
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7811
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66036
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.689e0

DP
type: SiteQuality
SIO_000300: 1.73492e6

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

QD
type: SiteQuality
SIO_000300: 1.589e1

GenotypeQuality
all individuals: 763
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37268
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3066
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7812
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1970
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4236
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66040
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.19e0

QD
type: SiteQuality
SIO_000300: 1.272e1

MQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.768e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 1.734765e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7817
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2561
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4235
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3068
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514050387596899e-5
allele num: 66048
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

DP
type: SiteQuality
SIO_000300: 1.734592e6

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

FS
type: SiteQuality
SIO_000300: 2.307e0

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

MQ
type: SiteQuality
SIO_000300: 5.808e1

GenotypeQuality
all individuals: 37206
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 197
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variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 194
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7812
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3061
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2555
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4235
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 789
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514463122822959e-5
allele num: 66030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

QD
type: SiteQuality
SIO_000300: 1.096e1

FS
type: SiteQuality
SIO_000300: 1.774e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.27e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: -3.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.34e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.21e-1

DP
type: SiteQuality
SIO_000300: 1.734151e6

GenotypeQuality
all individuals: 7725
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4242
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 1088
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 837
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variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.030632809351068e-4
allele num: 9924
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.853911753800519e-4
allele num: 16182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.579432452097987e-5
allele num: 65968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

QD
type: SiteQuality
SIO_000300: 1.94e1

FS
type: SiteQuality
SIO_000300: 1.103e0

VQSLOD
type: SiteQuality
SIO_000300: 3.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

MQ
type: SiteQuality
SIO_000300: 5.795e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

GenotypeQuality
all individuals: 7726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37047
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1094
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 249
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variant carriers: 0

GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
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GenotypeQuality
all individuals: 838
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1964
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4232
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.024803387779795e-4
allele num: 9918
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.32e1

MQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

DP
type: SiteQuality
SIO_000300: 1.728602e6

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

FS
type: SiteQuality
SIO_000300: 1.757e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.99e-1

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36613
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3037
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GenotypeQuality
all individuals: 153
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GenotypeQuality
all individuals: 836
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variant carriers: 0

GenotypeQuality
all individuals: 212
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2530
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.246261216350947e-4
allele num: 16048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.159999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.256e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.104e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

FS
type: SiteQuality
SIO_000300: 1.171e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.723871e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.15e-1

GenotypeQuality
all individuals: 3028
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65864
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.777e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.51e0

QD
type: SiteQuality
SIO_000300: 1.116e1

FS
type: SiteQuality
SIO_000300: 1.3909e1

DP
type: SiteQuality
SIO_000300: 1.717827e6

GenotypeQuality
all individuals: 1140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51952590791673e-5
allele num: 65810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.113e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.711321e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.624e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.952e0

QD
type: SiteQuality
SIO_000300: 1.091e1

GenotypeQuality
all individuals: 234
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1954
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variant carriers: 0

GenotypeQuality
all individuals: 4225
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.0389594602808e-5
allele num: 65812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.02e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

DP
type: SiteQuality
SIO_000300: 1.709563e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.471e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.288e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 510
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1773
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variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7528
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3025
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.65e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 1.211e0

VQSLOD
type: SiteQuality
SIO_000300: 7.83e-1

QD
type: SiteQuality
SIO_000300: 1.31e1

DP
type: SiteQuality
SIO_000300: 1.706384e6

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521421616358325e-5
allele num: 65728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.759e0

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

DP
type: SiteQuality
SIO_000300: 1.699187e6

QD
type: SiteQuality
SIO_000300: 1.433e1

GenotypeQuality
all individuals: 1952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521421616358325e-5
allele num: 65728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15564
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.93e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

QD
type: SiteQuality
SIO_000300: 1.433e1

MQRankSum
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SIO_000300: -2.81e-1

DP
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SIO_000300: 1.699187e6

FS
type: SiteQuality
SIO_000300: 2.759e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3015
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.522348069662648e-5
allele num: 65688
num of homozygotes: 0

MQRankSum
type: SiteQuality
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FS
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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MQ
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SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 1.696953e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.522533495736906e-5
allele num: 65680
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -7.91e-1

FS
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InbreedingCoeff
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MQ
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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SIO_000300: 5.71e-1

VQSLOD
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 65674
num of homozygotes: 0

Latino
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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FS
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ClippingRankSum
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QD
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DP
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SIO_000300: 1.69287e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 65668
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European (Finnish)
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num of homozygotes: 0

African
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Latino
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

DP
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QD
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MQ
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VQSLOD
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FS
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ReadPosRankSum
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SIO_000300: 2.81e-1

BaseQRankSum
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SIO_000300: -4.186e0

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
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allele frequency: 1.161710037174721e-4
allele num: 8608
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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African
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11516
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African
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allele frequency: 3.955696202531646e-4
allele num: 10112
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South Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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DP
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QD
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FS
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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South Asian
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Other
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East Asian
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11526
num of homozygotes: 0

African
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South Asian
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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MQ
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VQSLOD
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GenotypeQuality
all individuals: 2966
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.04627288512505e-5
allele num: 65654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.99e-1

DP
type: SiteQuality
SIO_000300: 1.679506e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

QD
type: SiteQuality
SIO_000300: 1.234e1

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 16

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

European (Non-Finnish)
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allele count: 16
allele frequency: 2.43568275232151e-4
allele num: 65690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14958
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

DP
type: SiteQuality
SIO_000300: 1.679997e6

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.41e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 5.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 11

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65752
num of homozygotes: 0

South Asian
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allele count: 10
allele frequency: 6.68359844940516e-4
allele num: 14962
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

QD
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SIO_000300: 1.286e1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.187e0

DP
type: SiteQuality
SIO_000300: 1.679702e6

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.046e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 2.00213561131874e-4
allele num: 14984
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
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SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.679015e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

FS
type: SiteQuality
SIO_000300: 3.607e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.256e0

MQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

QD
type: SiteQuality
SIO_000300: 1.505e1

VQSLOD
type: SiteQuality
SIO_000300: 4.88e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65780
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.677350427350428e-5
allele num: 14976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.215e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.11e-1

MQRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.679959e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.974e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5194797301404e-5
allele num: 65812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.395e1

ClippingRankSum
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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SIO_000300: 1.680459e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14964
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ReadPosRankSum
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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DP
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.517128379403465e-5
allele num: 65914
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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MQ
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DP
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ReadPosRankSum
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QD
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BaseQRankSum
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SIO_000300: 2.71e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.033704456511847e-5
allele num: 65926
num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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DP
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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FS
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QD
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InbreedingCoeff
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MQ
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Latino
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allele num: 11548
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South Asian
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East Asian
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VQSLOD
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QD
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.549590536851683e-5
allele num: 65940
num of homozygotes: 0

Latino
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East Asian
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allele frequency: 0.0e0
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DP
type: SiteQuality
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FS
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QD
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MQ
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MQRankSum
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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SIO_000300: -2.41e-1

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.55e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65984
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8630
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65930
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 14582
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European (Finnish)
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East Asian
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Other
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FS
type: SiteQuality
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MQ
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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ReadPosRankSum
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QD
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DP
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BaseQRankSum
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FS
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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allele num: 14654
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African
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European (Non-Finnish)
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allele frequency: 4.548624799102405e-5
allele num: 65954
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Latino
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East Asian
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Other
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QD
type: SiteQuality
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FS
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VQSLOD
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SIO_000300: 6.14e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 1.677669e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 35886
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515794579518584e-5
allele num: 65972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 1.679676e6

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e0

FS
type: SiteQuality
SIO_000300: 2.293e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.216e1

GenotypeQuality
all individuals: 1877
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35886
bin: 6.25e1
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GenotypeQuality
all individuals: 4157
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515794579518584e-5
allele num: 65972
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.293e0

QD
type: SiteQuality
SIO_000300: 1.216e1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.02e-1

DP
type: SiteQuality
SIO_000300: 1.679676e6

GenotypeQuality
all individuals: 228
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4159
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.756756756756757e-5
allele num: 14800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.028e-1

DP
type: SiteQuality
SIO_000300: 1.682091e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 796
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
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variant carriers: 0

GenotypeQuality
all individuals: 624
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 1099
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 73
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GenotypeQuality
all individuals: 1876
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variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4159
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1805
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7022
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514142087093453e-5
allele num: 66044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.463203463203463e-4
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

DP
type: SiteQuality
SIO_000300: 1.686428e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 4.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.181e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

GenotypeQuality
all individuals: 797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1678
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1099
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variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513408801985592e-5
allele num: 66076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.016e-1

FS
type: SiteQuality
SIO_000300: 7.618e0

QD
type: SiteQuality
SIO_000300: 1.573e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.689771e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.34e-1

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1088
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36621
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66070
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.633939233116624e-5
allele num: 15074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.699448e6

QD
type: SiteQuality
SIO_000300: 1.351e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.44e0

GenotypeQuality
all individuals: 500
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 36621
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
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variant carriers: 1

GenotypeQuality
all individuals: 793
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.25e1
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GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7004
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4365
bin: 9.75e1
variant carriers: 293

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 250
allele frequency: 3.783865597093991e-3
allele num: 66070
num of homozygotes: 2

African
type: Population
allele count: 1
allele frequency: 9.744689144416293e-5
allele num: 10262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.65357569324665e-4
allele num: 15074
num of homozygotes: 1

Latino
type: Population
allele count: 18
allele frequency: 1.557902025272633e-3
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 22
allele frequency: 3.326277592984578e-3
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.252252252252252e-3
allele num: 888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

DP
type: SiteQuality
SIO_000300: 1.699448e6

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.44e0

VQSLOD
type: SiteQuality
SIO_000300: 6.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 286
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 4107
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GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 2301
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 1092
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GenotypeQuality
all individuals: 159
bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510893542441e-5
allele num: 66186
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

MQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

QD
type: SiteQuality
SIO_000300: 1.907e1

BaseQRankSum
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SIO_000300: 4.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.868e-1

DP
type: SiteQuality
SIO_000300: 1.696997e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.754194303550527e-5
allele num: 10252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.532543663503958e-5
allele num: 66188
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.522306287503261e-5
allele num: 15332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

MQRankSum
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FS
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.363e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66426
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
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SIO_000300: 3.99e-1

ClippingRankSum
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SIO_000300: -2.88e-1

MQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.727e0

VQSLOD
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SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 1.715987e6

QD
type: SiteQuality
SIO_000300: 1.459e1

BaseQRankSum
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SIO_000300: -3.267e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.470615455807496e-4
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: 1.12e-2

ReadPosRankSum
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SIO_000300: 9.29e-1

DP
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MQRankSum
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QD
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FS
type: SiteQuality
SIO_000300: 7.188e0

BaseQRankSum
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SIO_000300: 2.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728907330567082e-4
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10164
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503668952243474e-5
allele num: 66504
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
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South Asian
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allele count: 1
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allele num: 16322
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MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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QD
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VQSLOD
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DP
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.25e-2

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

South Asian
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allele frequency: 6.104260774020266e-5
allele num: 16382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66492
num of homozygotes: 0

European (Finnish)
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allele num: 6614
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VQSLOD
type: SiteQuality
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MQ
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QD
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FS
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MQRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66496
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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African
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Other
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Latino
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DP
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MQ
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
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QD
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.721489e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.04e-1

FS
type: SiteQuality
SIO_000300: 1.808e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.26e0

VQSLOD
type: SiteQuality
SIO_000300: -4.809e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.03e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.75e-1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2312
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0