16-71692089-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692089
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692088
    reference: chr 16
allele count: 1
allele frequency: 8.400114241553686e-6
allele num: 119046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.367+46delC
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2279+46delC
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1493+46delC
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2384+46delC
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2279+46delC
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2279+46delC
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-92+46delC
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2078+46delC
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3063delG
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8399
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3415
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: TG
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

16-71692092-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692092
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692092
    reference: chr 16
allele count: 5
allele frequency: 4.205143731812753e-5
allele num: 118902
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-92+44A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1493+44A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2279+44A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2384+44A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2279+44A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2279+44A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2078+44A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3064T>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.367+44A>C
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/16-71692101-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692101
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692101
    reference: chr 16
allele count: 1
allele frequency: 8.389120987902887e-6
allele num: 119202
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-92+35T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3073A>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1493+35T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.367+35T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2279+35T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2279+35T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2384+35T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2078+35T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2279+35T>G
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38510
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

16-71692107-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692107
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692107
    reference: chr 16
allele count: 4
allele frequency: 3.347056264015798e-5
allele num: 119508
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2279+29A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2384+29A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2279+29A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-92+29A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2279+29A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.367+29A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3079T>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1493+29A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2078+29A>G
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11735
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

16-71692108-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692108
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692108
    reference: chr 16
allele count: 2
allele frequency: 1.674032409267444e-5
allele num: 119472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2279+28T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2078+28T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2384+28T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-92+28T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3080A>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2279+28T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2279+28T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1493+28T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.367+28T>A
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

16-71692109-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692109
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692109
    reference: chr 16
allele count: 2
allele frequency: 1.673388108904098e-5
allele num: 119518
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2078+27C>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2384+27C>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2279+27C>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2279+27C>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3081G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-92+27C>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2279+27C>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1493+27C>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.367+27C>G
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS

16-71692118-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692118
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692118
    reference: chr 16
allele count: 7
allele frequency: 5.827214757837604e-5
allele num: 120126
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2078+18A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2384+18A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2279+18A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2279+18A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1493+18A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.367+18A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-92+18A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3090T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2279+18A>G
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8592
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

16-71692124-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692124
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692125
    reference: chr 16
allele count: 1
allele frequency: 8.302200083022e-6
allele num: 120450
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2384+11dupA
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2279+11dupA
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2078+11dupA
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-92+11dupA
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.367+11dupA
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2279+11dupA
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1493+11dupA
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2279+11dupA
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3102dupT
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41179
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

16-71692135-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692135
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692135
    reference: chr 16
allele count: 4
allele frequency: 3.307479865716317e-5
allele num: 120938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-92+1G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2279+1G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2279+1G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2384+1G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2279+1G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3107C>T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1493+1G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2078+1G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.367+1G>A
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: c.2279+1G>A
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP

16-71692138-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692138
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692138
    reference: chr 16
allele count: 1
allele frequency: 8.258456659619451e-6
allele num: 121088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.365T>C
  hgvsp: ENST00000564884.1:c.365T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-94T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2382T>C
  hgvsp: ENST00000567016.1:c.2382T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2277T>C
  hgvsp: ENST00000356272.3:c.2277T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2277T>C
  hgvsp: ENST00000568954.1:c.2277T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2076T>C
  hgvsp: ENST00000393524.2:c.2076T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2277T>C
  hgvsp: ENST00000360429.3:c.2277T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3110A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1491T>C
  hgvsp: ENST00000568004.1:c.1491T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29854
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: c.2277T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

16-71692140-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692140
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692140
    reference: chr 16
allele count: 1
allele frequency: 8.254911672445104e-6
allele num: 121140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.363T>C
  hgvsp: ENSP00000456572.1:p.Phe122Leu
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2275T>C
  hgvsp: ENSP00000457991.1:p.Phe759Leu
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-96T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3112A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2074T>C
  hgvsp: ENSP00000377159.2:p.Phe692Leu
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2275T>C
  hgvsp: ENSP00000353610.3:p.Phe759Leu
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2380T>C
  hgvsp: ENSP00000454519.1:p.Phe794Leu
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2275T>C
  hgvsp: ENSP00000348611.3:p.Phe759Leu
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1489T>C
  hgvsp: ENSP00000458660.1:p.Phe497Leu
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Phe759Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/16-71692148-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692148
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692148
    reference: chr 16
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2372T>G
  hgvsp: ENSP00000454519.1:p.Leu791Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2267T>G
  hgvsp: ENSP00000457991.1:p.Leu756Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.355T>G
  hgvsp: ENSP00000456572.1:p.Leu119Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2066T>G
  hgvsp: ENSP00000377159.2:p.Leu689Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-104T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1481T>G
  hgvsp: ENSP00000458660.1:p.Leu494Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2267T>G
  hgvsp: ENSP00000348611.3:p.Leu756Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3120A>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2267T>G
  hgvsp: ENSP00000353610.3:p.Leu756Arg
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42231
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu756Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-71692150-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692150
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692150
    reference: chr 16
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.353A>G
  hgvsp: ENST00000564884.1:c.353A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2265A>G
  hgvsp: ENST00000360429.3:c.2265A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1479A>G
  hgvsp: ENST00000568004.1:c.1479A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3122T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2265A>G
  hgvsp: ENST00000356272.3:c.2265A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2370A>G
  hgvsp: ENST00000567016.1:c.2370A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2265A>G
  hgvsp: ENST00000568954.1:c.2265A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2064A>G
  hgvsp: ENST00000393524.2:c.2064A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-106A>G
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42240
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr755Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

16-71692154-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692154
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692154
    reference: chr 16
allele count: 2
allele frequency: 1.648315421639085e-5
allele num: 121336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.349A>G
  hgvsp: ENSP00000456572.1:p.Lys117Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2261A>G
  hgvsp: ENSP00000457991.1:p.Lys754Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2261A>G
  hgvsp: ENSP00000353610.3:p.Lys754Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3126T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2366A>G
  hgvsp: ENSP00000454519.1:p.Lys789Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1475A>G
  hgvsp: ENSP00000458660.1:p.Lys492Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2261A>G
  hgvsp: ENSP00000348611.3:p.Lys754Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2060A>G
  hgvsp: ENSP00000377159.2:p.Lys687Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-110A>G
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys754Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum

16-71692157-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692157
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692157
    reference: chr 16
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1472A>G
  hgvsp: ENSP00000458660.1:p.His491Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.346A>G
  hgvsp: ENSP00000456572.1:p.His116Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2258A>G
  hgvsp: ENSP00000353610.3:p.His753Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2057A>G
  hgvsp: ENSP00000377159.2:p.His686Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-113A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2258A>G
  hgvsp: ENSP00000348611.3:p.His753Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2363A>G
  hgvsp: ENSP00000454519.1:p.His788Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3129T>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2258A>G
  hgvsp: ENSP00000457991.1:p.His753Arg
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12613
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His753Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

16-71692164-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692164
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692164
    reference: chr 16
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-120C>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2356C>G
  hgvsp: ENSP00000454519.1:p.Leu786Val
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2050C>G
  hgvsp: ENSP00000377159.2:p.Leu684Val
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3136G>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2251C>G
  hgvsp: ENSP00000457991.1:p.Leu751Val
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2251C>G
  hgvsp: ENSP00000353610.3:p.Leu751Val
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.339C>G
  hgvsp: ENSP00000456572.1:p.Leu114Val
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2251C>G
  hgvsp: ENSP00000348611.3:p.Leu751Val
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1465C>G
  hgvsp: ENSP00000458660.1:p.Leu489Val
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu751Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/16-71692167-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692167
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692167
    reference: chr 16
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-123G>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2047G>T
  hgvsp: ENSP00000377159.2:p.Val683Phe
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2248G>T
  hgvsp: ENSP00000353610.3:p.Val750Phe
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.336G>T
  hgvsp: ENSP00000456572.1:p.Val113Phe
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2248G>T
  hgvsp: ENSP00000457991.1:p.Val750Phe
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2353G>T
  hgvsp: ENSP00000454519.1:p.Val785Phe
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2248G>T
  hgvsp: ENSP00000348611.3:p.Val750Phe
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3139C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1462G>T
  hgvsp: ENSP00000458660.1:p.Val488Phe
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3309
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val750Phe
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

16-71692167-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692167
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692167
    reference: chr 16
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.336G>A
  hgvsp: ENSP00000456572.1:p.Val113Ile
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-123G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1462G>A
  hgvsp: ENSP00000458660.1:p.Val488Ile
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2248G>A
  hgvsp: ENSP00000457991.1:p.Val750Ile
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2248G>A
  hgvsp: ENSP00000348611.3:p.Val750Ile
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2047G>A
  hgvsp: ENSP00000377159.2:p.Val683Ile
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2353G>A
  hgvsp: ENSP00000454519.1:p.Val785Ile
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3139C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2248G>A
  hgvsp: ENSP00000353610.3:p.Val750Ile
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8748
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val750Ile
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-71692187-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692187
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692187
    reference: chr 16
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.316T>G
  hgvsp: ENSP00000456572.1:p.Leu106Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2228T>G
  hgvsp: ENSP00000353610.3:p.Leu743Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2027T>G
  hgvsp: ENSP00000377159.2:p.Leu676Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2333T>G
  hgvsp: ENSP00000454519.1:p.Leu778Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1442T>G
  hgvsp: ENSP00000458660.1:p.Leu481Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2228T>G
  hgvsp: ENSP00000348611.3:p.Leu743Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3159A>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2228T>G
  hgvsp: ENSP00000457991.1:p.Leu743Arg
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-143T>G
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu743Arg
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

16-71692190-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692190
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692190
    reference: chr 16
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1439A>G
  hgvsp: ENSP00000458660.1:p.Asp480Gly
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2225A>G
  hgvsp: ENSP00000457991.1:p.Asp742Gly
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.313A>G
  hgvsp: ENSP00000456572.1:p.Asp105Gly
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2330A>G
  hgvsp: ENSP00000454519.1:p.Asp777Gly
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2024A>G
  hgvsp: ENSP00000377159.2:p.Asp675Gly
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2225A>G
  hgvsp: ENSP00000353610.3:p.Asp742Gly
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2225A>G
  hgvsp: ENSP00000348611.3:p.Asp742Gly
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-146A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3162T>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8748
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp742Gly
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD

16-71692191-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692191
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692191
    reference: chr 16
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2224G>A
  hgvsp: ENSP00000457991.1:p.Asp742Asn
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2224G>A
  hgvsp: ENSP00000353610.3:p.Asp742Asn
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2224G>A
  hgvsp: ENSP00000348611.3:p.Asp742Asn
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2329G>A
  hgvsp: ENSP00000454519.1:p.Asp777Asn
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2023G>A
  hgvsp: ENSP00000377159.2:p.Asp675Asn
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1438G>A
  hgvsp: ENSP00000458660.1:p.Asp480Asn
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.312G>A
  hgvsp: ENSP00000456572.1:p.Asp105Asn
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3163C>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-147G>A
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp742Asn
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

16-71692211-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692211
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692211
    reference: chr 16
allele count: 8
allele frequency: 6.591740549091988e-5
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2204C>T
  hgvsp: ENSP00000348611.3:p.Pro735Leu
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.2003C>T
  hgvsp: ENSP00000377159.2:p.Pro668Leu
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2204C>T
  hgvsp: ENSP00000353610.3:p.Pro735Leu
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3183G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2309C>T
  hgvsp: ENSP00000454519.1:p.Pro770Leu
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1418C>T
  hgvsp: ENSP00000458660.1:p.Pro473Leu
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2204C>T
  hgvsp: ENSP00000457991.1:p.Pro735Leu
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.292C>T
  hgvsp: ENSP00000456572.1:p.Pro98Leu
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-167C>T
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro735Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

16-71692220-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692220
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692220
    reference: chr 16
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-176A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1409A>G
  hgvsp: ENSP00000458660.1:p.Glu470Gly
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.283A>G
  hgvsp: ENSP00000456572.1:p.Glu95Gly
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1994A>G
  hgvsp: ENSP00000377159.2:p.Glu665Gly
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2195A>G
  hgvsp: ENSP00000348611.3:p.Glu732Gly
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3192T>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2195A>G
  hgvsp: ENSP00000457991.1:p.Glu732Gly
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2300A>G
  hgvsp: ENSP00000454519.1:p.Glu767Gly
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2195A>G
  hgvsp: ENSP00000353610.3:p.Glu732Gly
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu732Gly
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

16-71692224-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692224
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692224
    reference: chr 16
allele count: 4
allele frequency: 3.296793867963405e-5
allele num: 121330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1990C>G
  hgvsp: ENSP00000377159.2:p.Pro664Ala
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-180C>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2191C>G
  hgvsp: ENSP00000348611.3:p.Pro731Ala
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2296C>G
  hgvsp: ENSP00000454519.1:p.Pro766Ala
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3196G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2191C>G
  hgvsp: ENSP00000353610.3:p.Pro731Ala
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2191C>G
  hgvsp: ENSP00000457991.1:p.Pro731Ala
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1405C>G
  hgvsp: ENSP00000458660.1:p.Pro469Ala
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.279C>G
  hgvsp: ENSP00000456572.1:p.Pro94Ala
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro731Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

16-71692233-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692233
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692233
    reference: chr 16
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2182A>G
  hgvsp: ENSP00000353610.3:p.Ile728Val
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2182A>G
  hgvsp: ENSP00000457991.1:p.Ile728Val
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2287A>G
  hgvsp: ENSP00000454519.1:p.Ile763Val
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2182A>G
  hgvsp: ENSP00000348611.3:p.Ile728Val
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.270A>G
  hgvsp: ENSP00000456572.1:p.Ile91Val
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-189A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1981A>G
  hgvsp: ENSP00000377159.2:p.Ile661Val
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3205T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1396A>G
  hgvsp: ENSP00000458660.1:p.Ile466Val
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42270
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile728Val
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-71692240-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692240
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692240
    reference: chr 16
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2175G>T
  hgvsp: ENSP00000353610.3:p.Leu725Phe
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1389G>T
  hgvsp: ENSP00000458660.1:p.Leu463Phe
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.263G>T
  hgvsp: ENSP00000456572.1:p.Leu88Phe
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2280G>T
  hgvsp: ENSP00000454519.1:p.Leu760Phe
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1974G>T
  hgvsp: ENSP00000377159.2:p.Leu658Phe
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3212C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2175G>T
  hgvsp: ENSP00000348611.3:p.Leu725Phe
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-196G>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2175G>T
  hgvsp: ENSP00000457991.1:p.Leu725Phe
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu725Phe
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-71692240-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692240
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692240
    reference: chr 16
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2175G>A
  hgvsp: ENST00000360429.3:c.2175G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2175G>A
  hgvsp: ENST00000568954.1:c.2175G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2175G>A
  hgvsp: ENST00000356272.3:c.2175G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-196G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1389G>A
  hgvsp: ENST00000568004.1:c.1389G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2280G>A
  hgvsp: ENST00000567016.1:c.2280G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.263G>A
  hgvsp: ENST00000564884.1:c.263G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3212C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1974G>A
  hgvsp: ENST00000393524.2:c.1974G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11792
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu725Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-71692245-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692245
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692245
    reference: chr 16
allele count: 2
allele frequency: 1.652319029758266e-5
allele num: 121042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2170G>A
  hgvsp: ENSP00000353610.3:p.Asp724Asn
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3217C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2170G>A
  hgvsp: ENSP00000348611.3:p.Asp724Asn
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-201G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2275G>A
  hgvsp: ENSP00000454519.1:p.Asp759Asn
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1384G>A
  hgvsp: ENSP00000458660.1:p.Asp462Asn
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1969G>A
  hgvsp: ENSP00000377159.2:p.Asp657Asn
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2170G>A
  hgvsp: ENSP00000457991.1:p.Asp724Asn
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.258G>A
  hgvsp: ENSP00000456572.1:p.Asp87Asn
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp724Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

16-71692246-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692246
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692246
    reference: chr 16
allele count: 12
allele frequency: 9.916535823485662e-5
allele num: 121010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2274C>T
  hgvsp: ENST00000567016.1:c.2274C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1968C>T
  hgvsp: ENST00000393524.2:c.1968C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3218G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.257C>T
  hgvsp: ENST00000564884.1:c.257C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2169C>T
  hgvsp: ENST00000360429.3:c.2169C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2169C>T
  hgvsp: ENST00000356272.3:c.2169C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1383C>T
  hgvsp: ENST00000568004.1:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-202C>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2169C>T
  hgvsp: ENST00000568954.1:c.2169C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn723Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

16-71692247-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692247
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692247
    reference: chr 16
allele count: 1
allele frequency: 8.266102367411717e-6
allele num: 120976
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2168A>G
  hgvsp: ENSP00000457991.1:p.Asn723Ser
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2273A>G
  hgvsp: ENSP00000454519.1:p.Asn758Ser
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2168A>G
  hgvsp: ENSP00000348611.3:p.Asn723Ser
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-203A>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3219T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1382A>G
  hgvsp: ENSP00000458660.1:p.Asn461Ser
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1967A>G
  hgvsp: ENSP00000377159.2:p.Asn656Ser
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2168A>G
  hgvsp: ENSP00000353610.3:p.Asn723Ser
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.256A>G
  hgvsp: ENSP00000456572.1:p.Asn86Ser
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29895
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42055
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn723Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-71692255-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692255
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692255
    reference: chr 16
allele count: 2
allele frequency: 1.661736847352853e-5
allele num: 120356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1374A>C
  hgvsp: ENST00000568004.1:c.1374A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.248A>C
  hgvsp: ENST00000564884.1:c.248A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-211A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2160A>C
  hgvsp: ENST00000356272.3:c.2160A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2160A>C
  hgvsp: ENST00000360429.3:c.2160A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1959A>C
  hgvsp: ENST00000393524.2:c.1959A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2160A>C
  hgvsp: ENST00000568954.1:c.2160A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2265A>C
  hgvsp: ENST00000567016.1:c.2265A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3227T>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu720Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

16-71692264-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692264
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692264
    reference: chr 16
allele count: 4
allele frequency: 3.368591255137102e-5
allele num: 118744
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3236A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2151T>C
  hgvsp: ENST00000360429.3:c.2151T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1365T>C
  hgvsp: ENST00000568004.1:c.1365T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.239T>C
  hgvsp: ENST00000564884.1:c.239T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2256T>C
  hgvsp: ENST00000567016.1:c.2256T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2151T>C
  hgvsp: ENST00000568954.1:c.2151T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-220T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1950T>C
  hgvsp: ENST00000393524.2:c.1950T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2151T>C
  hgvsp: ENST00000356272.3:c.2151T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10513
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12079
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 3.25e1
  variant carriers: 0
hgvs: c.2151T>C
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-71692269-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692269
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692269
    reference: chr 16
allele count: 1
allele frequency: 8.448943037226043e-6
allele num: 118358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2149-3T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-222-3T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.237-3T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2149-3T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3241A>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2149-3T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1948-3T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1363-3T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2254-3T>A
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12148
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
hgvs: c.2149-3T>A
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

16-71692271-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692271
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692272
    reference: chr 16
allele count: 23
allele frequency: 1.952693868541253e-4
allele num: 117786
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2149-6dupT
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2149-6dupT
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2254-6dupT
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2149-6dupT
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3249dupA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-222-6dupT
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1948-6dupT
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1363-6dupT
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.237-6dupT
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27054
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 11887
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9889
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
hgvs: c.2149-6dupT
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-71692272-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692272
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692272
    reference: chr 16
allele count: 158
allele frequency: 1.341643598322096e-3
allele num: 117766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1948-6T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2149-6T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3244A>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-222-6T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.237-6T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2254-6T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2149-6T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2149-6T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1363-6T>C
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27058
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 9840
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11923
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
hgvs: c.2149-6T>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/16-71692273-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692273
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692273
    reference: chr 16
allele count: 1
allele frequency: 8.535919147773831e-6
allele num: 117152
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2149-7T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1948-7T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2149-7T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3245A>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-222-7T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.237-7T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1363-7T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2254-7T>G
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2149-7T>G
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
hgvs: c.2149-7T>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

16-71692279-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692279
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692279
    reference: chr 16
allele count: 5
allele frequency: 4.290961518657101e-5
allele num: 116524
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3251T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2149-13A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1948-13A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2149-13A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-222-13A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1363-13A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.237-13A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2254-13A>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2149-13A>C
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24665
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

16-71692285-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692285
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692285
    reference: chr 16
allele count: 1
allele frequency: 8.655610566769381e-6
allele num: 115532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-222-19T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1948-19T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3257A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2149-19T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.237-19T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2149-19T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2254-19T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1363-19T>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2149-19T>A
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21966
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4662
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7873
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

16-71692292-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692292
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692292
    reference: chr 16
allele count: 3
allele frequency: 2.620407735443635e-5
allele num: 114486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2254-26C>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.237-26C>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2149-26C>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1363-26C>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2149-26C>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-222-26C>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3264G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1948-26C>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2149-26C>A
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18087
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3446
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3006
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

16-71692294-A-ACAGAATG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692294
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692301
    reference: chr 16
allele count: 1
allele frequency: 8.751662815935028e-6
allele num: 114264
alternate allele: ACAGAATG
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.237-29_237-28insCATTCTG
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2149-29_2149-28insCATTCTG
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2149-29_2149-28insCATTCTG
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1948-29_1948-28insCATTCTG
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2254-29_2254-28insCATTCTG
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2149-29_2149-28insCATTCTG
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-222-29_-222-28insCATTCTG
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1363-29_1363-28insCATTCTG
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9191
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9723
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-71692299-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692299
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692299
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 113140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1363-33G>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2149-33G>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2149-33G>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3271C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2149-33G>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-222-33G>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1948-33G>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2254-33G>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.237-33G>C
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 11323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13032
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18324
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6840
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

11-105845313-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105845313
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105845313
    reference: chr 11
allele count: 5
allele frequency: 4.359121898484769e-5
allele num: 114702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2544+142G>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2544+142G>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*2+29G>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*2+29G>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.430+29G>C
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8386
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11478
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15681
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4575
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5415
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6319
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3820
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

11-105845313-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105845313
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105845313
    reference: chr 11
allele count: 2
allele frequency: 1.743648759393908e-5
allele num: 114702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.430+29G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*2+29G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2544+142G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*2+29G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2544+142G>T
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9585
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8386
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6319
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4575
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3820
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20937
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5415
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

16-71692304-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692304
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692302
    reference: chr 16
allele count: 2
allele frequency: 1.783739431343869e-5
allele num: 112124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2149-40_2149-39delCT
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2149-40_2149-39delCT
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.237-40_237-39delCT
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1363-40_1363-39delCT
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-222-40_-222-39delCT
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1948-40_1948-39delCT
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2149-40_2149-39delCT
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3280_99+3281delGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2254-40_2254-39delCT
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15606
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14947
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7657
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4685
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: CAG
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

16-71692307-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692307
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692307
    reference: chr 16
allele count: 1
allele frequency: 8.943263933605208e-6
allele num: 111816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1363-41T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-222-41T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2149-41T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.237-41T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2254-41T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1948-41T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2149-41T>C
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3279A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2149-41T>C
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16808
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2904
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

16-71692312-T-TAGTTCTTTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692312
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692321
    reference: chr 16
allele count: 1
allele frequency: 9.119760697479298e-6
allele num: 109652
alternate allele: TAGTTCTTTA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14940
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5917
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8099
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5378
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-71692505-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692505
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692505
    reference: chr 16
allele count: 1
allele frequency: 8.361343835181191e-6
allele num: 119598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2148+51G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-223+51G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2148+51G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.236+51G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2253+51G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2148+51G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1362+51G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3477C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1947+51G>A
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6738
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

16-71692509-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692509
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692509
    reference: chr 16
allele count: 1
allele frequency: 8.356313194618534e-6
allele num: 119670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1947+47G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2148+47G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.236+47G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2148+47G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-223+47G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1362+47G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2253+47G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2148+47G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3481C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44200
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/16-71692513-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692513
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692513
    reference: chr 16
allele count: 2
allele frequency: 1.670536743455672e-5
allele num: 119722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-223+43G>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2148+43G>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2148+43G>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.236+43G>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1362+43G>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1947+43G>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3485C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2253+43G>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2148+43G>T
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3505
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

16-71692513-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692513
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692513
    reference: chr 16
allele count: 2
allele frequency: 1.670536743455672e-5
allele num: 119722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2148+43G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3485C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2253+43G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-223+43G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2148+43G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1362+43G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1947+43G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.236+43G>A
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2148+43G>A
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44207
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum

16-71692516-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71692516
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 71692516
    reference: chr 16
allele count: 1
allele frequency: 8.340005337603416e-6
allele num: 119904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000377159
  ensembl transcript: ENST00000393524
  gene symbol: PHLPP2
  hgvsc: ENST00000393524.2:c.1947+40A>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000454519
  ensembl transcript: ENST00000567016
  gene symbol: PHLPP2
  hgvsc: ENST00000567016.1:c.2253+40A>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000348611
  ensembl transcript: ENST00000356272
  gene symbol: PHLPP2
  hgvsc: ENST00000356272.3:c.2148+40A>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000445781
  ensembl transcript: ENST00000540628
  gene symbol: PHLPP2
  hgvsc: ENST00000540628.1:c.-223+40A>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000260185
  ensembl transcript: ENST00000567077
  gene symbol: RP11-432I5.6
  hgvsc: ENST00000567077.1:n.99+3488T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000353610
  ensembl transcript: ENST00000360429
  gene symbol: PHLPP2
  hgvsc: ENST00000360429.3:c.2148+40A>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000457991
  ensembl transcript: ENST00000568954
  gene symbol: PHLPP2
  hgvsc: ENST00000568954.1:c.2148+40A>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000456572
  ensembl transcript: ENST00000564884
  gene symbol: PHLPP2
  hgvsc: ENST00000564884.1:c.236+40A>T
  variant of: http://identifiers.org/hgnc/29149
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040199
  ensembl protein: ENSP00000458660
  ensembl transcript: ENST00000568004
  gene symbol: PHLPP2
  hgvsc: ENST00000568004.1:c.1362+40A>T
  variant of: http://identifiers.org/hgnc/29149
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

11-105845314-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105845314
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105845314
    reference: chr 11
allele count: 1
allele frequency: 8.727374282173466e-6
allele num: 114582
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2544+143G>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2544+143G>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*2+30G>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.430+30G>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*2+30G>A
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8723
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3963
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6320
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

11-105845320-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105845320
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105845320
    reference: chr 11
allele count: 1
allele frequency: 8.789045333895832e-6
allele num: 113778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2544+149G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*2+36G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2544+149G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*2+36G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.430+36G>T
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4786
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3320
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

11-105845323-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105845323
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105845323
    reference: chr 11
allele count: 2
allele frequency: 1.760656372695741e-5
allele num: 113594
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*2+39T>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2544+152T>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*2+39T>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2544+152T>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.430+39T>C
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9828
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5470
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5481
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6220
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4606
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5585
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/11-105845330-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105845330
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105845330
    reference: chr 11
allele count: 1
allele frequency: 8.887466894185819e-6
allele num: 112518
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*2+46A>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2544+159A>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*2+46A>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2544+159A>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.430+46A>C
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14064
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3505
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3508
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3536
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5906
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5642
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5754
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4075
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

11-105845333-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105845333
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105845333
    reference: chr 11
allele count: 5
allele frequency: 4.489700626762208e-5
allele num: 111366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*2+49G>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*2+49G>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.430+49G>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2544+162G>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2544+162G>A
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13306
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13990
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5676
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5924
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5609
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5100
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

11-105850268-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850268
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850268
    reference: chr 11
allele count: 1
allele frequency: 8.301097405076952e-6
allele num: 120466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*3-34C>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2545-34C>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*3-34C>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2545-34C>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.431-34C>T
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42823
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8365
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

11-105850269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850269
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850269
    reference: chr 11
allele count: 1
allele frequency: 8.295863682367972e-6
allele num: 120542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*3-33G>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2545-33G>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*3-33G>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.431-33G>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2545-33G>A
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8405
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

11-105850269-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850269
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850269
    reference: chr 11
allele count: 1
allele frequency: 8.295863682367972e-6
allele num: 120542
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2545-33G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*3-33G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2545-33G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.431-33G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*3-33G>T
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43255
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD

11-105850272-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850272
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850272
    reference: chr 11
allele count: 1
allele frequency: 8.285004142502071e-6
allele num: 120700
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2545-30T>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.431-30T>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2545-30T>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*3-30T>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*3-30T>C
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

11-105850279-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850279
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850279
    reference: chr 11
allele count: 1
allele frequency: 8.272119647938589e-6
allele num: 120888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2545-23T>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2545-23T>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*3-23T>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*3-23T>C
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.431-23T>C
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-105850285-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850285
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850285
    reference: chr 11
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2545-17C>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*3-17C>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2545-17C>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.431-17C>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*3-17C>T
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-105850294-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850294
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850294
    reference: chr 11
allele count: 2
allele frequency: 1.650546330835507e-5
allele num: 121172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.431-8C>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*3-8C>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*3-8C>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2545-8C>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2545-8C>A
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.25e1
  variant carriers: 0
hgvs: c.2545-8C>A
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

11-105850298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850298
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850298
    reference: chr 11
allele count: 3
allele frequency: 2.474471700291988e-5
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*3-4C>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*3-4C>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2545-4C>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2545-4C>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.431-4C>T
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
hgvs: c.2545-4C>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

11-105850305-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850305
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850305
    reference: chr 11
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*6A>G
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*6A>G
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.434A>G
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2548A>G
  hgvsp: ENSP00000282499.5:p.Thr850Ala
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2548A>G
  hgvsp: ENSP00000435775.1:p.Thr850Ala
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44763
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr850Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

11-105850320-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850320
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850320
    reference: chr 11
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2563A>G
  hgvsp: ENSP00000282499.5:p.Ile855Val
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2563A>G
  hgvsp: ENSP00000435775.1:p.Ile855Val
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.449A>G
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*21A>G
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*21A>G
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44842
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8598
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile855Val
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

11-105850323-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850323
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850323
    reference: chr 11
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*24A>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*24A>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.452A>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2566A>T
  hgvsp: ENSP00000435775.1:p.Arg856Ter
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2566A>T
  hgvsp: ENSP00000282499.5:p.Arg856Ter
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8596
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg856Ter
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/11-105850333-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850333
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850333
    reference: chr 11
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2576C>A
  hgvsp: ENSP00000282499.5:p.Ala859Asp
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*34C>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*34C>A
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2576C>A
  hgvsp: ENSP00000435775.1:p.Ala859Asp
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.462C>A
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44859
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala859Asp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

11-105850344-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850344
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850344
    reference: chr 11
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.473A>G
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*45A>G
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*45A>G
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2587A>G
  hgvsp: ENSP00000435775.1:p.Ile863Val
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2587A>G
  hgvsp: ENSP00000282499.5:p.Ile863Val
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44890
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ile863Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

11-105850349-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850349
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850348
    reference: chr 11
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.481delG
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2595delG
  hgvsp: ENSP00000435775.1:p.Ser866ValfsTer9
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*53delG
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*53delG
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2595delG
  hgvsp: ENSP00000282499.5:p.Ser866ValfsTer9
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8603
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser866ValfsTer9
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: TG
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

11-105850351-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105850351
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 105850351
    reference: chr 11
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000376835
  ensembl transcript: ENST00000393127
  gene symbol: GRIA4
  hgvsc: ENST00000393127.2:c.*52G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152578
  ensembl transcript: ENST00000533094
  gene symbol: GRIA4
  hgvsc: ENST00000533094.1:n.480G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000432180
  ensembl transcript: ENST00000525187
  gene symbol: GRIA4
  hgvsc: ENST00000525187.1:c.*52G>T
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000282499
  ensembl transcript: ENST00000282499
  gene symbol: GRIA4
  hgvsc: ENST00000282499.5:c.2594G>T
  hgvsp: ENSP00000282499.5:p.Gly865Val
  variant of: http://identifiers.org/hgnc/4574
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152578
  ensembl protein: ENSP00000435775
  ensembl transcript: ENST00000530497
  gene symbol: GRIA4
  hgvsc: ENST00000530497.1:c.2594G>T
  hgvsp: ENSP00000435775.1:p.Gly865Val
  variant of: http://identifiers.org/hgnc/4574
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8602
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly865Val
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510026576467746e-5
allele num: 66224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e-1

MQ
type: SiteQuality
SIO_000300: 6.008e1

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

DP
type: SiteQuality
SIO_000300: 1.739662e6

VQSLOD
type: SiteQuality
SIO_000300: 5.28e0

QD
type: SiteQuality
SIO_000300: 1.371e1

GenotypeQuality
all individuals: 427
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 991
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37455
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3327
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 1
allele frequency: 9.701202949165696e-5
allele num: 10308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.044852807834129e-5
allele num: 66172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.827e1

DP
type: SiteQuality
SIO_000300: 1.739608e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.717e0

VQSLOD
type: SiteQuality
SIO_000300: -1.36e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-1

FS
type: SiteQuality
SIO_000300: 5.1908e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-2

QD
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 2043
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3335
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509479531457553e-5
allele num: 66248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.743397e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 2.91e0

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

QD
type: SiteQuality
SIO_000300: 1.15e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.39e-1

GenotypeQuality
all individuals: 165
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8484
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3337
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39360
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2048
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508159140952553e-5
allele num: 66306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.985702938840349e-4
allele num: 15108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

DP
type: SiteQuality
SIO_000300: 1.751456e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.92e-1

FS
type: SiteQuality
SIO_000300: 5.331e0

VQSLOD
type: SiteQuality
SIO_000300: 7.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

QD
type: SiteQuality
SIO_000300: 1.5e1

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8478
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3332
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39458
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66290
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.325732467188121e-4
allele num: 15086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

DP
type: SiteQuality
SIO_000300: 1.753097e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.99e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

QD
type: SiteQuality
SIO_000300: 1.846e1

FS
type: SiteQuality
SIO_000300: 8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.922e-1

GenotypeQuality
all individuals: 3330
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39585
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2043
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8482
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

DP
type: SiteQuality
SIO_000300: 1.754197e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.063e-1

QD
type: SiteQuality
SIO_000300: 1.162e1

FS
type: SiteQuality
SIO_000300: 9.702999999999999e0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40600
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3331
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 425
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.048038707447727e-4
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.486e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.14e-1

FS
type: SiteQuality
SIO_000300: 5.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

DP
type: SiteQuality
SIO_000300: 1.767798e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.63e-1

GenotypeQuality
all individuals: 8624
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3323
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 201
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503714174009804e-5
allele num: 66502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.03e-1

MQ
type: SiteQuality
SIO_000300: 6.014e1

MQRankSum
type: SiteQuality
SIO_000300: 2.03e0

FS
type: SiteQuality
SIO_000300: 1.039e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: -2.916e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 3.776e1

DP
type: SiteQuality
SIO_000300: 1.773982e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.62e-1

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3322
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 83
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66602
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South Asian
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Other
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European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
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African
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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FS
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SIO_000300: 9.05e-1

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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African
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allele frequency: 0.0e0
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South Asian
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ClippingRankSum
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QD
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MQRankSum
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MQ
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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allele frequency: 0.0e0
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African
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South Asian
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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BaseQRankSum
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VQSLOD
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QD
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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African
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

FS
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InbreedingCoeff
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QD
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MQ
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DP
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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ReadPosRankSum
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MQ
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VQSLOD
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DP
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FS
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BaseQRankSum
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ClippingRankSum
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QD
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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South Asian
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East Asian
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QD
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MQ
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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Latino
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South Asian
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Other
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MQRankSum
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QD
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MQ
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FS
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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Latino
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African
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ReadPosRankSum
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FS
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ClippingRankSum
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MQRankSum
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MQ
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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DP
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

DP
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MQ
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FS
type: SiteQuality
SIO_000300: 6.655e0

InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 8.74e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.95e-1

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.441e0

InbreedingCoeff
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SIO_000300: 5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2

DP
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SIO_000300: 1.788489e6

BaseQRankSum
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SIO_000300: 1.77e-1

QD
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SIO_000300: 1.019e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.788463e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.484e1

MQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.504e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.73e-1

DP
type: SiteQuality
SIO_000300: 1.788505e6

QD
type: SiteQuality
SIO_000300: 1.027e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.712e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele num: 16510
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQ
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ReadPosRankSum
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QD
type: SiteQuality
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

East Asian
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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DP
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BaseQRankSum
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FS
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ClippingRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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SIO_000300: 3.06e-2

MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66696
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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Latino
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allele num: 11568
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

South Asian
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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ClippingRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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DP
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BaseQRankSum
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SIO_000300: -1.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.067224851352991e-5
allele num: 16482
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66556
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South Asian
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allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 906
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Latino
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ClippingRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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MQRankSum
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MQ
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FS
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DP
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QD
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
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ReadPosRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.471e0

MQ
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.52e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.931620629708325e-4
allele num: 10354
num of homozygotes: 0

Latino
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allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

Other
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East Asian
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allele count: 7
allele frequency: 8.113120074177098e-4
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.007971123477215e-5
allele num: 66490
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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BaseQRankSum
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SIO_000300: -2.286e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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African
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Other
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East Asian
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Latino
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allele num: 11554
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QD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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DP
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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African
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Latino
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East Asian
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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QD
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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Other
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African
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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FS
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ClippingRankSum
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VQSLOD
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MQ
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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allele num: 11372
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.028e0

DP
type: SiteQuality
SIO_000300: 1.69915e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

QD
type: SiteQuality
SIO_000300: 1.302e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 2.395e0

VQSLOD
type: SiteQuality
SIO_000300: 8.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

GenotypeQuality
all individuals: 3939
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 23

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

East Asian
type: Population
allele count: 23
allele frequency: 2.762430939226519e-3
allele num: 8326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

DP
type: SiteQuality
SIO_000300: 1.678266e6

QD
type: SiteQuality
SIO_000300: 1.076e1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.28e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 158

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 3
allele frequency: 3.333333333333334e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.647848046354538e-5
allele num: 64546
num of homozygotes: 0

African
type: Population
allele count: 149
allele frequency: 1.471750296325563e-2
allele num: 10124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.648305084745763e-4
allele num: 11328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16042
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.79e0

QD
type: SiteQuality
SIO_000300: 1.499e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.678e6

GenotypeQuality
all individuals: 370
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 810
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variant carriers: 0

GenotypeQuality
all individuals: 6793
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557583875891717e-5
allele num: 64202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.243e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 1.639879e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.15e-1

FS
type: SiteQuality
SIO_000300: 1.221e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

VQSLOD
type: SiteQuality
SIO_000300: -1.765e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3175
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63840
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.311537490532694e-5
allele num: 15844
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.875670404680643e-4
allele num: 8204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.03e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.234e1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

FS
type: SiteQuality
SIO_000300: 7.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

DP
type: SiteQuality
SIO_000300: 1.607193e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 351
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581427712939242e-5
allele num: 63234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 6.63e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.796e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.523227e6

MQRankSum
type: SiteQuality
SIO_000300: 1.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.193459794341189e-5
allele num: 62628
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.082652134423252e-5
allele num: 11010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.55e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.418e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.436563e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.293e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599692858971077e-5
allele num: 62512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.404407e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.318e0

FS
type: SiteQuality
SIO_000300: 6.376e0

QD
type: SiteQuality
SIO_000300: 5.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 3.534e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.830000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.482e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61928
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2539e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.275e0

MQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

QD
type: SiteQuality
SIO_000300: 2.317e1

DP
type: SiteQuality
SIO_000300: 1.337611e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
all individuals: 20937
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.242586928022972e-5
allele num: 64076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.17096018735363e-3
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14248
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.697e0

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

DP
type: SiteQuality
SIO_000300: 1.450968e6

FS
type: SiteQuality
SIO_000300: 2.017e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.073e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.17e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 1419
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.191327138432213e-4
allele num: 8394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11056
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.018528916339136e-5
allele num: 14248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.17e-1

QD
type: SiteQuality
SIO_000300: 1.073e1

FS
type: SiteQuality
SIO_000300: 2.017e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.697e0

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

DP
type: SiteQuality
SIO_000300: 1.450968e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1095
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.260196263815081e-5
allele num: 61346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15158
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.083e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

FS
type: SiteQuality
SIO_000300: 2.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

DP
type: SiteQuality
SIO_000300: 1.286623e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61132
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.597176408497163e-5
allele num: 15158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.19e-1

DP
type: SiteQuality
SIO_000300: 1.261622e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

VQSLOD
type: SiteQuality
SIO_000300: 2.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.724e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3155
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variant carriers: 1

GenotypeQuality
all individuals: 3520
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.667778519012675e-5
allele num: 59960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9518
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.064e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

QD
type: SiteQuality
SIO_000300: 4.7e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.234814e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.204e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 6.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509753004408479e-5
allele num: 66236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
SIO_000300: 6.784e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.227e0

QD
type: SiteQuality
SIO_000300: 1.248e1

DP
type: SiteQuality
SIO_000300: 3.137804e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: 6.94e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509251713000694e-5
allele num: 66258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15290
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 5.501e0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.444e0

VQSLOD
type: SiteQuality
SIO_000300: 3.52e-1

QD
type: SiteQuality
SIO_000300: 1.367e1

DP
type: SiteQuality
SIO_000300: 3.139504e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508932882665379e-5
allele num: 66272
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.525711302531976e-5
allele num: 15324
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.175e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

DP
type: SiteQuality
SIO_000300: 3.142433e6

FS
type: SiteQuality
SIO_000300: 1.187e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.421e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66272
num of homozygotes: 0

South Asian
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

Latino
type: Population
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allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.469142191745374e-5
allele num: 15458
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66322
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9546
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.562158277876714e-5
allele num: 64014
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: -1.573e0

BaseQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.616e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8336
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Other
type: Population
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allele frequency: 0.0e0
allele num: 848
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6500
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11004
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9506
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.570943823048888e-5
allele num: 63656
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.476000000000001e0

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -6.624e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13818
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6516
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African
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allele count: 2
allele frequency: 2.104377104377104e-4
allele num: 9504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -9.948e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.96e-1

QD
type: SiteQuality
SIO_000300: 1.658e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 1
allele frequency: 9.186110600771634e-5
allele num: 10886
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.901e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.358686e6

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.792179163604996e-5
allele num: 62602
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 2
allele frequency: 2.443195699975568e-4
allele num: 8186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.477e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

FS
type: SiteQuality
SIO_000300: 1.0395e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.276e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.506069459923492e-5
allele num: 66398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.314e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.350000000000001e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.720094e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505706628120577e-5
allele num: 66414
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11574
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European (Finnish)
type: Population
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66414
num of homozygotes: 0

African
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European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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BaseQRankSum
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MQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.504392827055001e-5
allele num: 66472
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European (Finnish)
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num of homozygotes: 0

East Asian
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allele num: 8648
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Latino
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Other
type: Population
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allele num: 898
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South Asian
type: Population
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ReadPosRankSum
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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BaseQRankSum
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FS
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66520
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South Asian
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African
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Latino
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Other
type: Population
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East Asian
type: Population
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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DP
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FS
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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Latino
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European (Finnish)
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South Asian
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VQSLOD
type: SiteQuality
SIO_000300: -1.251e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.287e0

MQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 8.634e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.333e1

DP
type: SiteQuality
SIO_000300: 1.738341e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.368e0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44537
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001921229586936e-5
allele num: 66624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.064e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

QD
type: SiteQuality
SIO_000300: 1.062e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

DP
type: SiteQuality
SIO_000300: 1.741836e6

FS
type: SiteQuality
SIO_000300: 1.251e0

MQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.74e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.47e-1

QD
type: SiteQuality
SIO_000300: 1.087e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

FS
type: SiteQuality
SIO_000300: 1.919e0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-1

DP
type: SiteQuality
SIO_000300: 1.742961e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-1

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.66e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

DP
type: SiteQuality
SIO_000300: 1.744064e6

GenotypeQuality
all individuals: 1855
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 356
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.679e0

VQSLOD
type: SiteQuality
SIO_000300: -2.44e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.768e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e-1

DP
type: SiteQuality
SIO_000300: 1.745281e6

QD
type: SiteQuality
SIO_000300: 1.239e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44859
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: -3.848e-1

FS
type: SiteQuality
SIO_000300: 1.877e0

MQ
type: SiteQuality
SIO_000300: 5.45e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.095e0

QD
type: SiteQuality
SIO_000300: 1.285e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.745462e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

GenotypeQuality
all individuals: 900
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8597
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.046e0

MQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

DP
type: SiteQuality
SIO_000300: 1.745819e6

FS
type: SiteQuality
SIO_000300: 1.0396e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

QD
type: SiteQuality
SIO_000300: 1.176e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

GenotypeQuality
all individuals: 8603
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.043e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.843e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

DP
type: SiteQuality
SIO_000300: 1.745998e6

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.122e1

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.94e-2

DP
type: SiteQuality
SIO_000300: 1.74585e6

MQ
type: SiteQuality
SIO_000300: 6.021e1

QD
type: SiteQuality
SIO_000300: 1.194e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 1.289e1