16-55517880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517880
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517880
    reference: chr 16
allele count: 1119
allele frequency: 9.221564781698614e-3
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.153-48C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.381-48C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.153-48C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.231-48C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.153-48C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.153-48C>T
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 3.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 4.25e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 5.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9101
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 6.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 5.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 27077
  bin: 2.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 12067
  bin: 3.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 4.75e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35666
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2190
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 8
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

16-55517882-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517882
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517882
    reference: chr 16
allele count: 303
allele frequency: 2.49707438479669e-3
allele num: 121342
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.153-46C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.153-46C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.153-46C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.153-46C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.381-46C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.231-46C>G
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9352
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 3.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 4.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 27585
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12194
  bin: 3.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 9.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 4.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36710
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8913
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7244
  bin: 9.75e1
  variant carriers: 297
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 4
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

16-55517885-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517885
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517885
    reference: chr 16
allele count: 3
allele frequency: 2.471984179301253e-5
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.231-43A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.153-43A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.153-43A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.153-43A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.153-43A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.381-43A>G
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8967
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7003
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37099
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

16-55517887-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517887
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517887
    reference: chr 16
allele count: 3
allele frequency: 2.472024918011174e-5
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.153-41G>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.153-41G>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.381-41G>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.153-41G>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.231-41G>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.153-41G>A
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12221
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8944
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-55517890-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517890
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517890
    reference: chr 16
allele count: 32
allele frequency: 2.636609320413948e-4
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.153-38C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.153-38C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.153-38C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.231-38C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.153-38C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.381-38C>T
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27843
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12212
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-55517895-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517895
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517895
    reference: chr 16
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.153-33A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.153-33A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.381-33A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.153-33A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.153-33A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.231-33A>G
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37643
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ

16-55517899-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517899
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517899
    reference: chr 16
allele count: 1105
allele frequency: 9.103041486802649e-3
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.153-29A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.153-29A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.153-29A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.153-29A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.231-29A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.381-29A>G
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 3.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 4.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 27844
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12116
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 5.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 4.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9636
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 9.75e1
  variant carriers: 348
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 5.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 21
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

16-55517902-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517902
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517902
    reference: chr 16
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.231-26C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.381-26C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.153-26C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.153-26C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.153-26C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.153-26C>G
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

16-55517903-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517903
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517903
    reference: chr 16
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.153-25T>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.153-25T>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.153-25T>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.231-25T>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.153-25T>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.381-25T>G
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6334
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum

16-55517904-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517904
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517904
    reference: chr 16
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.153-24C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.381-24C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.153-24C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.153-24C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.153-24C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.231-24C>T
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9036
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

16-55517921-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517921
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517921
    reference: chr 16
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.153-7C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.153-7C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.231-7C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.153-7C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.381-7C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.153-7C>T
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38411
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genotype quality: GenotypeQuality
  all individuals: 9042
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: c.381-7C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-55517938-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517938
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517938
    reference: chr 16
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.163T>C
  hgvsp: ENSP00000461421.1:p.Tyr55His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.241T>C
  hgvsp: ENSP00000394237.2:p.Tyr81His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.163T>C
  hgvsp: ENSP00000444143.1:p.Tyr55His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.163T>C
  hgvsp: ENSP00000456096.1:p.Tyr55His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.163T>C
  hgvsp: ENSP00000457949.1:p.Tyr55His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.391T>C
  hgvsp: ENSP00000219070.4:p.Tyr131His
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9778
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6332
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr131His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

16-55517966-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517966
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517966
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.191T>C
  hgvsp: ENSP00000457949.1:p.Val64Ala
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.269T>C
  hgvsp: ENSP00000394237.2:p.Val90Ala
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.191T>C
  hgvsp: ENSP00000456096.1:p.Val64Ala
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.191T>C
  hgvsp: ENSP00000461421.1:p.Val64Ala
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.191T>C
  hgvsp: ENSP00000444143.1:p.Val64Ala
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.419T>C
  hgvsp: ENSP00000219070.4:p.Val140Ala
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38416
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6328
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val140Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

16-55517971-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517971
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517971
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.196G>A
  hgvsp: ENSP00000444143.1:p.Asp66Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.196G>A
  hgvsp: ENSP00000456096.1:p.Asp66Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.196G>A
  hgvsp: ENSP00000457949.1:p.Asp66Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.424G>A
  hgvsp: ENSP00000219070.4:p.Asp142Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.196G>A
  hgvsp: ENSP00000461421.1:p.Asp66Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.274G>A
  hgvsp: ENSP00000394237.2:p.Asp92Asn
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9049
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6328
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp142Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

16-55517971-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517971
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517971
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.196G>T
  hgvsp: ENSP00000444143.1:p.Asp66Tyr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.196G>T
  hgvsp: ENSP00000457949.1:p.Asp66Tyr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.424G>T
  hgvsp: ENSP00000219070.4:p.Asp142Tyr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.274G>T
  hgvsp: ENSP00000394237.2:p.Asp92Tyr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.196G>T
  hgvsp: ENSP00000461421.1:p.Asp66Tyr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.196G>T
  hgvsp: ENSP00000456096.1:p.Asp66Tyr
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38416
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp142Tyr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

16-55517972-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517972
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517972
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.197A>G
  hgvsp: ENSP00000457949.1:p.Asp66Gly
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.425A>G
  hgvsp: ENSP00000219070.4:p.Asp142Gly
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.197A>G
  hgvsp: ENSP00000456096.1:p.Asp66Gly
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.197A>G
  hgvsp: ENSP00000461421.1:p.Asp66Gly
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.275A>G
  hgvsp: ENSP00000394237.2:p.Asp92Gly
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.197A>G
  hgvsp: ENSP00000444143.1:p.Asp66Gly
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6326
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp142Gly
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

16-55517980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517980
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517980
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.205G>A
  hgvsp: ENSP00000444143.1:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.205G>A
  hgvsp: ENSP00000457949.1:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.205G>A
  hgvsp: ENSP00000456096.1:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.283G>A
  hgvsp: ENSP00000394237.2:p.Ala95Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.205G>A
  hgvsp: ENSP00000461421.1:p.Ala69Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.433G>A
  hgvsp: ENSP00000219070.4:p.Ala145Thr
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala145Thr
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

16-55517984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55517984
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55517984
    reference: chr 16
allele count: 5
allele frequency: 4.118276912939626e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.287G>A
  hgvsp: ENSP00000394237.2:p.Arg96His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.209G>A
  hgvsp: ENSP00000444143.1:p.Arg70His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.209G>A
  hgvsp: ENSP00000461421.1:p.Arg70His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.209G>A
  hgvsp: ENSP00000456096.1:p.Arg70His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.209G>A
  hgvsp: ENSP00000457949.1:p.Arg70His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.437G>A
  hgvsp: ENSP00000219070.4:p.Arg146His
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12318
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38419
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg146His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

16-55518000-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518000
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518000
    reference: chr 16
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.225G>T
  hgvsp: ENSP00000461421.1:p.Trp75Cys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.303G>T
  hgvsp: ENSP00000394237.2:p.Trp101Cys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.453G>T
  hgvsp: ENSP00000219070.4:p.Trp151Cys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.225G>T
  hgvsp: ENSP00000457949.1:p.Trp75Cys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.225G>T
  hgvsp: ENSP00000444143.1:p.Trp75Cys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.225G>T
  hgvsp: ENSP00000456096.1:p.Trp75Cys
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6323
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Trp151Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

16-55518003-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518003
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518003
    reference: chr 16
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.306C>T
  hgvsp: ENST00000437642.2:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.228C>T
  hgvsp: ENST00000543485.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.228C>T
  hgvsp: ENST00000570308.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.456C>T
  hgvsp: ENST00000219070.4:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.228C>T
  hgvsp: ENST00000568715.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.228C>T
  hgvsp: ENST00000564864.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12316
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9048
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser152Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

16-55518004-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518004
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518004
    reference: chr 16
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.229G>A
  hgvsp: ENSP00000457949.1:p.Asp77Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.229G>A
  hgvsp: ENSP00000456096.1:p.Asp77Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.229G>A
  hgvsp: ENSP00000461421.1:p.Asp77Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.307G>A
  hgvsp: ENSP00000394237.2:p.Asp103Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.457G>A
  hgvsp: ENSP00000219070.4:p.Asp153Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.229G>A
  hgvsp: ENSP00000444143.1:p.Asp77Asn
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12315
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6320
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp153Asn
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

16-55518009-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518009
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518009
    reference: chr 16
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.312G>A
  hgvsp: ENST00000437642.2:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.234G>A
  hgvsp: ENST00000570308.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.234G>A
  hgvsp: ENST00000543485.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.462G>A
  hgvsp: ENST00000219070.4:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.234G>A
  hgvsp: ENST00000564864.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.234G>A
  hgvsp: ENST00000568715.1:c.234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6317
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val154Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

16-55518010-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518010
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518010
    reference: chr 16
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.235A>T
  hgvsp: ENSP00000444143.1:p.Thr79Ser
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.235A>T
  hgvsp: ENSP00000457949.1:p.Thr79Ser
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.235A>T
  hgvsp: ENSP00000461421.1:p.Thr79Ser
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.313A>T
  hgvsp: ENSP00000394237.2:p.Thr105Ser
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.463A>T
  hgvsp: ENSP00000219070.4:p.Thr155Ser
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.235A>T
  hgvsp: ENSP00000456096.1:p.Thr79Ser
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr155Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-55518011-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518011
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518011
    reference: chr 16
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.236C>A
  hgvsp: ENSP00000444143.1:p.Thr79Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.236C>A
  hgvsp: ENSP00000461421.1:p.Thr79Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.236C>A
  hgvsp: ENSP00000456096.1:p.Thr79Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.314C>A
  hgvsp: ENSP00000394237.2:p.Thr105Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.464C>A
  hgvsp: ENSP00000219070.4:p.Thr155Asn
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.236C>A
  hgvsp: ENSP00000457949.1:p.Thr79Asn
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9046
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr155Asn
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

16-55518011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518011
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518011
    reference: chr 16
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.236C>T
  hgvsp: ENSP00000444143.1:p.Thr79Ile
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.236C>T
  hgvsp: ENSP00000461421.1:p.Thr79Ile
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.236C>T
  hgvsp: ENSP00000457949.1:p.Thr79Ile
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.464C>T
  hgvsp: ENSP00000219070.4:p.Thr155Ile
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.314C>T
  hgvsp: ENSP00000394237.2:p.Thr105Ile
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.236C>T
  hgvsp: ENSP00000456096.1:p.Thr79Ile
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6315
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr155Ile
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

16-55518019-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518019
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518019
    reference: chr 16
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.244C>T
  hgvsp: ENSP00000457949.1:p.Arg82Trp
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.322C>T
  hgvsp: ENSP00000394237.2:p.Arg108Trp
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.244C>T
  hgvsp: ENSP00000444143.1:p.Arg82Trp
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.244C>T
  hgvsp: ENSP00000456096.1:p.Arg82Trp
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.244C>T
  hgvsp: ENSP00000461421.1:p.Arg82Trp
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.472C>T
  hgvsp: ENSP00000219070.4:p.Arg158Trp
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9043
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg158Trp
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

16-55518020-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518020
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518020
    reference: chr 16
allele count: 3
allele frequency: 2.471495419495156e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.323G>A
  hgvsp: ENSP00000394237.2:p.Arg108Gln
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.245G>A
  hgvsp: ENSP00000456096.1:p.Arg82Gln
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.473G>A
  hgvsp: ENSP00000219070.4:p.Arg158Gln
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.245G>A
  hgvsp: ENSP00000444143.1:p.Arg82Gln
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.245G>A
  hgvsp: ENSP00000457949.1:p.Arg82Gln
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.245G>A
  hgvsp: ENSP00000461421.1:p.Arg82Gln
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9040
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg158Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-55518021-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518021
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518021
    reference: chr 16
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.474G>A
  hgvsp: ENST00000219070.4:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.324G>A
  hgvsp: ENST00000437642.2:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.246G>A
  hgvsp: ENST00000564864.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.246G>A
  hgvsp: ENST00000543485.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.246G>A
  hgvsp: ENST00000568715.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.246G>A
  hgvsp: ENST00000570308.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg158Arg
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

16-55518021-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518021
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518021
    reference: chr 16
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.246G>C
  hgvsp: ENST00000570308.1:c.246G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.246G>C
  hgvsp: ENST00000568715.1:c.246G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.246G>C
  hgvsp: ENST00000564864.1:c.246G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.474G>C
  hgvsp: ENST00000219070.4:c.474G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.246G>C
  hgvsp: ENST00000543485.1:c.246G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.324G>C
  hgvsp: ENST00000437642.2:c.324G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38403
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9039
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg158Arg
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

16-55518021-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518021
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518021
    reference: chr 16
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.246G>T
  hgvsp: ENST00000564864.1:c.246G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.324G>T
  hgvsp: ENST00000437642.2:c.324G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.246G>T
  hgvsp: ENST00000543485.1:c.246G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.246G>T
  hgvsp: ENST00000568715.1:c.246G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.474G>T
  hgvsp: ENST00000219070.4:c.474G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.246G>T
  hgvsp: ENST00000570308.1:c.246G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12318
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9039
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg158Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

16-55518029-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518029
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518029
    reference: chr 16
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.254G>T
  hgvsp: ENSP00000457949.1:p.Arg85Leu
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.254G>T
  hgvsp: ENSP00000456096.1:p.Arg85Leu
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.482G>T
  hgvsp: ENSP00000219070.4:p.Arg161Leu
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.332G>T
  hgvsp: ENSP00000394237.2:p.Arg111Leu
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.254G>T
  hgvsp: ENSP00000444143.1:p.Arg85Leu
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.254G>T
  hgvsp: ENSP00000461421.1:p.Arg85Leu
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9036
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg161Leu
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

16-55518035-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518035
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518035
    reference: chr 16
allele count: 2
allele frequency: 1.648532805802836e-5
allele num: 121320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.260A>G
  hgvsp: ENSP00000456096.1:p.His87Arg
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.260A>G
  hgvsp: ENSP00000461421.1:p.His87Arg
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.260A>G
  hgvsp: ENSP00000457949.1:p.His87Arg
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.488A>G
  hgvsp: ENSP00000219070.4:p.His163Arg
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.260A>G
  hgvsp: ENSP00000444143.1:p.His87Arg
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.338A>G
  hgvsp: ENSP00000394237.2:p.His113Arg
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6304
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His163Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

16-55518036-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518036
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518036
    reference: chr 16
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.261T>C
  hgvsp: ENST00000568715.1:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.261T>C
  hgvsp: ENST00000570308.1:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.261T>C
  hgvsp: ENST00000564864.1:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.489T>C
  hgvsp: ENST00000219070.4:c.489T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.339T>C
  hgvsp: ENST00000437642.2:c.339T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.261T>C
  hgvsp: ENST00000543485.1:c.261T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9022
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His163His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

16-55518039-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518039
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518039
    reference: chr 16
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.264T>C
  hgvsp: ENST00000568715.1:c.264T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.264T>C
  hgvsp: ENST00000543485.1:c.264T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.342T>C
  hgvsp: ENST00000437642.2:c.342T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.492T>C
  hgvsp: ENST00000219070.4:c.492T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.264T>C
  hgvsp: ENST00000570308.1:c.264T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.264T>C
  hgvsp: ENST00000564864.1:c.264T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38234
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp164Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

16-55518043-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518043
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518043
    reference: chr 16
allele count: 205
allele frequency: 1.691223786031317e-3
allele num: 121214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.268G>A
  hgvsp: ENSP00000444143.1:p.Glu90Lys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.268G>A
  hgvsp: ENSP00000456096.1:p.Glu90Lys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.268G>A
  hgvsp: ENSP00000457949.1:p.Glu90Lys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.268G>A
  hgvsp: ENSP00000461421.1:p.Glu90Lys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.496G>A
  hgvsp: ENSP00000219070.4:p.Glu166Lys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.346G>A
  hgvsp: ENSP00000394237.2:p.Glu116Lys
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 28313
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12280
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9582
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu166Lys
num of homozygotes: 4
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

16-55518046-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518046
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518046
    reference: chr 16
allele count: 6
allele frequency: 4.952701698776683e-5
allele num: 121146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.271G>A
  hgvsp: ENSP00000457949.1:p.Ala91Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.271G>A
  hgvsp: ENSP00000461421.1:p.Ala91Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.271G>A
  hgvsp: ENSP00000444143.1:p.Ala91Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.349G>A
  hgvsp: ENSP00000394237.2:p.Ala117Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.271G>A
  hgvsp: ENSP00000456096.1:p.Ala91Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.499G>A
  hgvsp: ENSP00000219070.4:p.Ala167Thr
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9000
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala167Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

16-55518048-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518048
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518048
    reference: chr 16
allele count: 3
allele frequency: 2.47794627812469e-5
allele num: 121068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.273A>G
  hgvsp: ENST00000543485.1:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.273A>G
  hgvsp: ENST00000568715.1:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.501A>G
  hgvsp: ENST00000219070.4:c.501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.351A>G
  hgvsp: ENST00000437642.2:c.351A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.273A>G
  hgvsp: ENST00000570308.1:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.273A>G
  hgvsp: ENST00000564864.1:c.273A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12264
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6183
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8978
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala167Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

16-55518050-ACAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518050
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518047
    reference: chr 16
allele count: 1
allele frequency: 8.262823902696986e-6
allele num: 121024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.279_281delCAT
  hgvsp: ENSP00000444143.1:p.Ile93del
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.279_281delCAT
  hgvsp: ENSP00000457949.1:p.Ile93del
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.279_281delCAT
  hgvsp: ENSP00000461421.1:p.Ile93del
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.357_359delCAT
  hgvsp: ENSP00000394237.2:p.Ile119del
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.507_509delCAT
  hgvsp: ENSP00000219070.4:p.Ile169del
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.279_281delCAT
  hgvsp: ENSP00000456096.1:p.Ile93del
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8970
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile169del
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: ACAT
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-55518056-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518056
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518056
    reference: chr 16
allele count: 1
allele frequency: 8.298066550493736e-6
allele num: 120510
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.281T>C
  hgvsp: ENSP00000457949.1:p.Met94Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.281T>C
  hgvsp: ENSP00000444143.1:p.Met94Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.359T>C
  hgvsp: ENSP00000394237.2:p.Met120Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.509T>C
  hgvsp: ENSP00000219070.4:p.Met170Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.281T>C
  hgvsp: ENSP00000461421.1:p.Met94Thr
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.281T>C
  hgvsp: ENSP00000456096.1:p.Met94Thr
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met170Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

16-55518069-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518069
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518069
    reference: chr 16
allele count: 2
allele frequency: 1.689246258319538e-5
allele num: 118396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.294C>T
  hgvsp: ENST00000564864.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.294C>T
  hgvsp: ENST00000570308.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.294C>T
  hgvsp: ENST00000568715.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.294C>T
  hgvsp: ENST00000543485.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.522C>T
  hgvsp: ENST00000219070.4:c.522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.372C>T
  hgvsp: ENST00000437642.2:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8003
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly174Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-55518070-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518070
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518070
    reference: chr 16
allele count: 1
allele frequency: 8.466540232999188e-6
allele num: 118112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.295C>T
  hgvsp: ENSP00000457949.1:p.Arg99Cys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.295C>T
  hgvsp: ENSP00000461421.1:p.Arg99Cys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.373C>T
  hgvsp: ENSP00000394237.2:p.Arg125Cys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.295C>T
  hgvsp: ENSP00000444143.1:p.Arg99Cys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.523C>T
  hgvsp: ENSP00000219070.4:p.Arg175Cys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.295C>T
  hgvsp: ENSP00000456096.1:p.Arg99Cys
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8003
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3638
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg175Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

16-55518071-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518071
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518071
    reference: chr 16
allele count: 11
allele frequency: 9.381663113006397e-5
allele num: 117250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.296G>A
  hgvsp: ENSP00000461421.1:p.Arg99His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.524G>A
  hgvsp: ENSP00000219070.4:p.Arg175His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.296G>A
  hgvsp: ENSP00000457949.1:p.Arg99His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.296G>A
  hgvsp: ENSP00000456096.1:p.Arg99His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.296G>A
  hgvsp: ENSP00000444143.1:p.Arg99His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.374G>A
  hgvsp: ENSP00000394237.2:p.Arg125His
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25153
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9780
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9177
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4570
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg175His
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

16-55518071-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518071
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518071
    reference: chr 16
allele count: 1
allele frequency: 8.528784648187633e-6
allele num: 117250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.374G>T
  hgvsp: ENSP00000394237.2:p.Arg125Leu
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.296G>T
  hgvsp: ENSP00000456096.1:p.Arg99Leu
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.296G>T
  hgvsp: ENSP00000461421.1:p.Arg99Leu
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.296G>T
  hgvsp: ENSP00000444143.1:p.Arg99Leu
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.524G>T
  hgvsp: ENSP00000219070.4:p.Arg175Leu
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.296G>T
  hgvsp: ENSP00000457949.1:p.Arg99Leu
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4570
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32107
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg175Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

16-55518093-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518093
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518093
    reference: chr 16
allele count: 24
allele frequency: 2.158778131577527e-4
allele num: 111174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.301+17G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.379+17G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.301+17G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.301+17G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.529+17G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.301+17G>C
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13741
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15414
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4590
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13610
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

16-55518094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518094
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518094
    reference: chr 16
allele count: 1
allele frequency: 9.009658353755226e-6
allele num: 110992
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.529+18C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.301+18C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.379+18C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.301+18C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.301+18C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.301+18C>T
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15367
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4527
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13702
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3359
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-55518095-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518095
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518095
    reference: chr 16
allele count: 2
allele frequency: 1.802613789995493e-5
allele num: 110950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.301+19A>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.379+19A>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.301+19A>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.301+19A>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.301+19A>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.529+19A>C
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4512
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3323
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6075
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3537
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum

16-55518095-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518095
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518095
    reference: chr 16
allele count: 2
allele frequency: 1.802613789995493e-5
allele num: 110950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.301+19A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.301+19A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.529+19A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.301+19A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.379+19A>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.301+19A>G
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3323
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3537
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

16-55518104-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518104
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518104
    reference: chr 16
allele count: 50
allele frequency: 4.620303461531353e-4
allele num: 108218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.379+28G>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.301+28G>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.301+28G>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.301+28G>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.529+28G>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.301+28G>T
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6794
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6401
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9957
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18889
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6110
  bin: 9.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14568
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

16-55518108-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518108
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518108
    reference: chr 16
allele count: 4
allele frequency: 3.749882816161995e-5
allele num: 106670
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.529+32G>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.301+32G>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.301+32G>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.301+32G>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.379+32G>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.301+32G>A
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19934
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11727
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5070
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3404
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6462
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

16-55518127-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518127
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518127
    reference: chr 16
allele count: 2
allele frequency: 2.11779156695398e-5
allele num: 94438
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.379+51C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.301+51C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.301+51C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.301+51C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.529+51C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.301+51C>G
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18178
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10271
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6137
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4296
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5394
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12349
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

16-55518127-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55518127
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55518127
    reference: chr 16
allele count: 121
allele frequency: 1.281263898007158e-3
allele num: 94438
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.529+51C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.301+51C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.379+51C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.301+51C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.301+51C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.301+51C>T
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12889
  bin: 1.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10271
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18178
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6137
  bin: 9.75e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 7844
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4296
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5454
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5394
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 1
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-55519164-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519164
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519164
    reference: chr 16
allele count: 3
allele frequency: 2.471291826614165e-5
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.530-47G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.302-47G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.302-47G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.302-47G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.380-47G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.302-47G>C
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5063
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

16-55519164-GGGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519164
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519161
    reference: chr 16
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.380-46_380-44delGGT
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.302-46_302-44delGGT
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.302-46_302-44delGGT
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.530-46_530-44delGGT
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.302-46_302-44delGGT
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.302-46_302-44delGGT
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 8132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5063
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: GGGT
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

16-55519181-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519181
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519181
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.530-30C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.302-30C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.302-30C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.380-30C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.302-30C>G
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.302-30C>G
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5219
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

16-55519186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519186
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519186
    reference: chr 16
allele count: 5
allele frequency: 4.11868399808893e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.302-25C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.302-25C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.302-25C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.302-25C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.530-25C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.380-25C>T
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5228
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37679
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3350
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/16-55519194-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519194
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519194
    reference: chr 16
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.380-17C>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.530-17C>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.302-17C>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.302-17C>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.302-17C>A
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.302-17C>A
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5262
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3323
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-55519195-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519195
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519195
    reference: chr 16
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.302-16C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.530-16C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.302-16C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.302-16C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.380-16C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.302-16C>T
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3354
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

16-55519196-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519196
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519196
    reference: chr 16
allele count: 5
allele frequency: 4.118480445454845e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.302-15C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.302-15C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.302-15C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.530-15C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.302-15C>T
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.380-15C>T
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3323
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

16-55519200-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519200
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519200
    reference: chr 16
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.302-11G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.302-11G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.302-11G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.380-11G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.302-11G>C
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.530-11G>C
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3359
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37675
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

16-55519218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519218
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519218
    reference: chr 16
allele count: 50
allele frequency: 4.118276912939626e-4
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.309C>T
  hgvsp: ENST00000543485.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.309C>T
  hgvsp: ENST00000570308.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.309C>T
  hgvsp: ENST00000564864.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.309C>T
  hgvsp: ENST00000568715.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.387C>T
  hgvsp: ENST00000437642.2:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.537C>T
  hgvsp: ENST00000219070.4:c.537C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 9.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly179Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

16-55519230-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519230
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519230
    reference: chr 16
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.399C>T
  hgvsp: ENST00000437642.2:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.549C>T
  hgvsp: ENST00000219070.4:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.321C>T
  hgvsp: ENST00000568715.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.321C>T
  hgvsp: ENST00000564864.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.321C>T
  hgvsp: ENST00000570308.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.321C>T
  hgvsp: ENST00000543485.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37662
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro183Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

16-55519234-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519234
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519234
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.325G>C
  hgvsp: ENSP00000457949.1:p.Asp109His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.325G>C
  hgvsp: ENSP00000444143.1:p.Asp109His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.403G>C
  hgvsp: ENSP00000394237.2:p.Asp135His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.325G>C
  hgvsp: ENSP00000456096.1:p.Asp109His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.553G>C
  hgvsp: ENSP00000219070.4:p.Asp185His
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.325G>C
  hgvsp: ENSP00000461421.1:p.Asp109His
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7501
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5295
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp185His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

16-55519236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519236
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519236
    reference: chr 16
allele count: 12
allele frequency: 9.883701775771753e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.327C>T
  hgvsp: ENST00000564864.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.327C>T
  hgvsp: ENST00000543485.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.555C>T
  hgvsp: ENST00000219070.4:c.555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.327C>T
  hgvsp: ENST00000570308.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.405C>T
  hgvsp: ENST00000437642.2:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.327C>T
  hgvsp: ENST00000568715.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37662
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp185Asp
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

16-55519245-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519245
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519245
    reference: chr 16
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.336C>T
  hgvsp: ENST00000564864.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.336C>T
  hgvsp: ENST00000568715.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.564C>T
  hgvsp: ENST00000219070.4:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.414C>T
  hgvsp: ENST00000437642.2:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.336C>T
  hgvsp: ENST00000543485.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.336C>T
  hgvsp: ENST00000570308.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5300
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp188Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

16-55519252-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519252
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519252
    reference: chr 16
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.421C>T
  hgvsp: ENST00000437642.2:c.421C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.343C>T
  hgvsp: ENST00000570308.1:c.343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.343C>T
  hgvsp: ENST00000564864.1:c.343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000457949
  ensembl transcript: ENST00000568715
  gene symbol: MMP2
  hgvsc: ENST00000568715.1:c.343C>T
  hgvsp: ENST00000568715.1:c.343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.343C>T
  hgvsp: ENST00000543485.1:c.343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.571C>T
  hgvsp: ENST00000219070.4:c.571C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu191Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ

16-55519266-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519266
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519266
    reference: chr 16
allele count: 7
allele frequency: 5.765587678115476e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.585C>T
  hgvsp: ENST00000219070.4:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.357C>T
  hgvsp: ENST00000543485.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.357C>T
  hgvsp: ENST00000570308.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.435C>T
  hgvsp: ENST00000437642.2:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.357C>T
  hgvsp: ENST00000564864.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37652
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3368
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe195Phe
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

16-55519272-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519272
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519272
    reference: chr 16
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.363A>G
  hgvsp: ENST00000543485.1:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.363A>G
  hgvsp: ENST00000570308.1:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.363A>G
  hgvsp: ENST00000564864.1:c.363A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.441A>G
  hgvsp: ENST00000437642.2:c.441A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.591A>G
  hgvsp: ENST00000219070.4:c.591A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5302
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3368
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3583
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro197Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

16-55519308-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519308
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519308
    reference: chr 16
allele count: 4
allele frequency: 3.294947198471145e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.399C>T
  hgvsp: ENST00000564864.1:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.477C>T
  hgvsp: ENST00000437642.2:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.627C>T
  hgvsp: ENST00000219070.4:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.399C>T
  hgvsp: ENST00000570308.1:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.399C>T
  hgvsp: ENST00000543485.1:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5280
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3326
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp209Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-55519327-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519327
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519327
    reference: chr 16
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.646G>A
  hgvsp: ENSP00000219070.4:p.Gly216Arg
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.496G>A
  hgvsp: ENSP00000394237.2:p.Gly166Arg
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.418G>A
  hgvsp: ENSP00000461421.1:p.Gly140Arg
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.418G>A
  hgvsp: ENSP00000444143.1:p.Gly140Arg
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.418G>A
  hgvsp: ENSP00000456096.1:p.Gly140Arg
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37641
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3357
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3322
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly216Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

16-55519328-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519328
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519328
    reference: chr 16
allele count: 7
allele frequency: 5.766632616074076e-5
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.497G>A
  hgvsp: ENSP00000394237.2:p.Gly166Glu
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.419G>A
  hgvsp: ENSP00000444143.1:p.Gly140Glu
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.419G>A
  hgvsp: ENSP00000461421.1:p.Gly140Glu
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.419G>A
  hgvsp: ENSP00000456096.1:p.Gly140Glu
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.647G>A
  hgvsp: ENSP00000219070.4:p.Gly216Glu
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7602
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5245
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37641
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly216Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

16-55519329-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519329
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519329
    reference: chr 16
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.420A>G
  hgvsp: ENST00000570308.1:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.420A>G
  hgvsp: ENST00000564864.1:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.420A>G
  hgvsp: ENST00000543485.1:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.648A>G
  hgvsp: ENST00000219070.4:c.648A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.498A>G
  hgvsp: ENST00000437642.2:c.498A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37639
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly216Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

16-55519330-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519330
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519330
    reference: chr 16
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.499G>A
  hgvsp: ENSP00000394237.2:p.Glu167Lys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.421G>A
  hgvsp: ENSP00000456096.1:p.Glu141Lys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.421G>A
  hgvsp: ENSP00000444143.1:p.Glu141Lys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.649G>A
  hgvsp: ENSP00000219070.4:p.Glu217Lys
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.421G>A
  hgvsp: ENSP00000461421.1:p.Glu141Lys
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37638
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu217Lys
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

16-55519331-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 55519331
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 55519331
    reference: chr 16
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000461421
  ensembl transcript: ENST00000570308
  gene symbol: MMP2
  hgvsc: ENST00000570308.1:c.422A>T
  hgvsp: ENSP00000461421.1:p.Glu141Val
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000394237
  ensembl transcript: ENST00000437642
  gene symbol: MMP2
  hgvsc: ENST00000437642.2:c.500A>T
  hgvsp: ENSP00000394237.2:p.Glu167Val
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000444143
  ensembl transcript: ENST00000543485
  gene symbol: MMP2
  hgvsc: ENST00000543485.1:c.422A>T
  hgvsp: ENSP00000444143.1:p.Glu141Val
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000219070
  ensembl transcript: ENST00000219070
  gene symbol: MMP2
  hgvsc: ENST00000219070.4:c.650A>T
  hgvsp: ENSP00000219070.4:p.Glu217Val
  variant of: http://identifiers.org/hgnc/7166
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000087245
  ensembl protein: ENSP00000456096
  ensembl transcript: ENST00000564864
  gene symbol: MMP2
  hgvsc: ENST00000564864.1:c.422A>T
  hgvsp: ENSP00000456096.1:p.Glu141Val
  variant of: http://identifiers.org/hgnc/7166
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3356
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5243
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu217Val
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8202
bin: 9.75e1
variant carriers: 1110

European (Non-Finnish)
type: Population
allele count: 885
allele frequency: 1.32655814371796e-2
allele num: 66714
num of homozygotes: 5

Other
type: Population
allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 77
allele frequency: 1.164197157544602e-2
allele num: 6614
num of homozygotes: 1

Latino
type: Population
allele count: 50
allele frequency: 4.329004329004329e-3
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 32
allele frequency: 3.075740099961553e-3
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 72
allele frequency: 4.362578768783325e-3
allele num: 16504
num of homozygotes: 2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.469e0

VQSLOD
type: SiteQuality
SIO_000300: 5.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 1.389e1

DP
type: SiteQuality
SIO_000300: 1.957021e6

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2225
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 218
allele frequency: 3.267777911020506e-3
allele num: 66712
num of homozygotes: 3

South Asian
type: Population
allele count: 71
allele frequency: 4.301466133527203e-3
allele num: 16506
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.05143721633888e-4
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.805843906189927e-4
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.463203463203463e-4
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

QD
type: SiteQuality
SIO_000300: 1.599e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

DP
type: SiteQuality
SIO_000300: 1.932706e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.467406380027739e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.546e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

QD
type: SiteQuality
SIO_000300: 1.576e1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 73
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GenotypeQuality
all individuals: 823
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496537665997182e-5
allele num: 66718
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.249e0

FS
type: SiteQuality
SIO_000300: 6.956e0

DP
type: SiteQuality
SIO_000300: 1.925871e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.094e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 32

GenotypeQuality
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GenotypeQuality
all individuals: 65
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 28
allele frequency: 2.691272587466359e-3
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 2.098e1

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.74e-1

DP
type: SiteQuality
SIO_000300: 1.9267e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.097e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 548
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variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.927632e6

QD
type: SiteQuality
SIO_000300: 9.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 7250
bin: 9.75e1
variant carriers: 1083

European (Non-Finnish)
type: Population
allele count: 337
allele frequency: 5.049899601402583e-3
allele num: 66734
num of homozygotes: 1

Latino
type: Population
allele count: 44
allele frequency: 3.804911795226565e-3
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 172
allele frequency: 1.04191906954204e-2
allele num: 16508
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.360749924402782e-3
allele num: 6614
num of homozygotes: 0

African
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allele count: 536
allele frequency: 5.150874495483375e-2
allele num: 10406
num of homozygotes: 16

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 7.709251101321586e-3
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

DP
type: SiteQuality
SIO_000300: 1.958116e6

QD
type: SiteQuality
SIO_000300: 1.371e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.55e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.668e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
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allele num: 10406
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Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
type: SiteQuality
SIO_000300: 6.99e-1

DP
type: SiteQuality
SIO_000300: 1.898638e6

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.81e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
type: Population
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South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
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allele num: 11568
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.211e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.47e-1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele num: 908
num of homozygotes: 0

Latino
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num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.339e0

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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African
type: Population
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQ
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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DP
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MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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MQ
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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Other
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VQSLOD
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FS
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MQ
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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Latino
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allele frequency: 0.0e0
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East Asian
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African
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Other
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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FS
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DP
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10406
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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FS
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SIO_000300: 5.071e0

MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
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SIO_000300: 4.37e0

MQ
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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VQSLOD
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

East Asian
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South Asian
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allele num: 16512
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European (Finnish)
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allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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Other
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allele frequency: 0.0e0
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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FS
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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African
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East Asian
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QD
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DP
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FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66738
num of homozygotes: 0

East Asian
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Latino
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European (Finnish)
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African
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South Asian
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Other
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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ClippingRankSum
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InbreedingCoeff
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FS
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QD
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DP
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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East Asian
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InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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DP
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ClippingRankSum
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QD
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ReadPosRankSum
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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QD
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DP
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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MQ
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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QD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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MQRankSum
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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African
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East Asian
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South Asian
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QD
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MQRankSum
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ClippingRankSum
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MQ
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VQSLOD
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DP
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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African
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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DP
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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BaseQRankSum
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QD
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FS
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Other
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African
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South Asian
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European (Non-Finnish)
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MQ
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MQRankSum
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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FS
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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East Asian
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Latino
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European (Non-Finnish)
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ClippingRankSum
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FS
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VQSLOD
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MQ
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MQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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MQRankSum
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ReadPosRankSum
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DP
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MQ
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2138
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.757e1

VQSLOD
type: SiteQuality
SIO_000300: -3.939e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.788e0

DP
type: SiteQuality
SIO_000300: 1.896475e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.91e-1

GenotypeQuality
all individuals: 1223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6300
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.895709e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.369e0

VQSLOD
type: SiteQuality
SIO_000300: 1.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.135e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.328e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.291e0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6353
bin: 9.75e1
variant carriers: 201

European (Non-Finnish)
type: Population
allele count: 108
allele frequency: 1.619530336202501e-3
allele num: 66686
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.070065903572668e-4
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.31858407079646e-3
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.886280546469117e-4
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 84
allele frequency: 5.106382978723404e-3
allele num: 16450
num of homozygotes: 4

DP
type: SiteQuality
SIO_000300: 1.901269e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.573e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.83e-2

FS
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

QD
type: SiteQuality
SIO_000300: 1.33e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6189
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2184
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.924557351809084e-4
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.000240009600384e-5
allele num: 66664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.695e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.666e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.207e1

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

DP
type: SiteQuality
SIO_000300: 1.88725e6

GenotypeQuality
all individuals: 342
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2171
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 801
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variant carriers: 0

GenotypeQuality
all individuals: 38047
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736111111111111e-4
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.16e-1

DP
type: SiteQuality
SIO_000300: 1.88516e6

FS
type: SiteQuality
SIO_000300: 8.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 1.523e1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

GenotypeQuality
all individuals: 2161
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 800
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variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 38069
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variant carriers: 0

GenotypeQuality
all individuals: 6180
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variant carriers: 1

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 1194
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 5.726e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.57e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.306e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.297e1

DP
type: SiteQuality
SIO_000300: 1.884039e6

VQSLOD
type: SiteQuality
SIO_000300: 7.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.697e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 37271
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 937
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 506
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variant carriers: 0

GenotypeQuality
all individuals: 2125
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 188
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GenotypeQuality
all individuals: 799
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506341698550899e-5
allele num: 66386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.870964e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.225e1

GenotypeQuality
all individuals: 1126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34226
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1933
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6147
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1898
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variant carriers: 0

GenotypeQuality
all individuals: 388
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GenotypeQuality
all individuals: 772
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GenotypeQuality
all individuals: 485
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11154
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.244555071561916e-4
allele num: 16070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

QD
type: SiteQuality
SIO_000300: 1.395e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

DP
type: SiteQuality
SIO_000300: 1.806958e6

FS
type: SiteQuality
SIO_000300: 1.476e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 33906
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 718
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6142
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 227
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 1860
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variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.564945226917058e-4
allele num: 6390
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.31e1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 7.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.91e-1

DP
type: SiteQuality
SIO_000300: 1.793954e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.633e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 11

GenotypeQuality
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GenotypeQuality
all individuals: 1774
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32107
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.575795776867318e-4
allele num: 6346
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.996641880546894e-4
allele num: 8338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.188118811881188e-5
allele num: 64640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.264094211976948e-5
allele num: 15964
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.377e0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

QD
type: SiteQuality
SIO_000300: 1.268e1

FS
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.767039e6

GenotypeQuality
all individuals: 1070
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6119
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 696
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
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variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7413
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547029702970297e-5
allele num: 64640
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.377e0

QD
type: SiteQuality
SIO_000300: 1.268e1

FS
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

DP
type: SiteQuality
SIO_000300: 1.767039e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.85e-1

GenotypeQuality
all individuals: 427
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6095
bin: 9.75e1
variant carriers: 25

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.871668311944718e-5
allele num: 10130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.263068589701755e-4
allele num: 61292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.666666666666667e-4
allele num: 6000
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.078137988362427e-4
allele num: 9624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

FS
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

QD
type: SiteQuality
SIO_000300: 1.388e1

DP
type: SiteQuality
SIO_000300: 1.510136e6

GenotypeQuality
all individuals: 1623
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6073
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1154
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.634681400595024e-5
allele num: 61174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15478
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.401e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.864e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

DP
type: SiteQuality
SIO_000300: 1.507614e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

GenotypeQuality
all individuals: 1234
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
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variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.269469692015955e-5
allele num: 61172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.922e1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e-1

DP
type: SiteQuality
SIO_000300: 1.494932e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4512
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6075
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.295504599041327e-4
allele num: 15438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.494932e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.45e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

GenotypeQuality
all individuals: 2766
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5572
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4607
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9400
num of homozygotes: 0

East Asian
type: Population
allele count: 47
allele frequency: 6.235075616874503e-3
allele num: 7538
num of homozygotes: 1

South Asian
type: Population
allele count: 2
allele frequency: 1.312680493567866e-4
allele num: 15236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59610
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.207729468599034e-3
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5862
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

QD
type: SiteQuality
SIO_000300: 1.314e1

VQSLOD
type: SiteQuality
SIO_000300: 5.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.249e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.376774e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 501
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 923
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variant carriers: 0

GenotypeQuality
all individuals: 385
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variant carriers: 0

GenotypeQuality
all individuals: 6066
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 4
allele frequency: 5.405405405405405e-4
allele num: 7400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15088
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.942e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.117e0

QD
type: SiteQuality
SIO_000300: 9.19e0

DP
type: SiteQuality
SIO_000300: 1.329385e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 7844
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.865182436611008e-5
allele num: 51744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.206885e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

FS
type: SiteQuality
SIO_000300: 1.652e0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

QD
type: SiteQuality
SIO_000300: 1.38e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3029
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5238
num of homozygotes: 0

African
type: Population
allele count: 108
allele frequency: 1.297141484506366e-2
allele num: 8326
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.797773654916512e-5
allele num: 51744
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.155920883637298e-3
allele num: 7786
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.082152974504249e-5
allele num: 14120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.652e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

QD
type: SiteQuality
SIO_000300: 1.38e1

DP
type: SiteQuality
SIO_000300: 1.206885e6

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3327
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.624e1

DP
type: SiteQuality
SIO_000300: 3.014252e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.699e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 6.067e0

VQSLOD
type: SiteQuality
SIO_000300: -2.364e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

QD
type: SiteQuality
SIO_000300: 2.148e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3316
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.364e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.699e-1

MQ
type: SiteQuality
SIO_000300: 5.624e1

DP
type: SiteQuality
SIO_000300: 3.014252e6

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 6.067e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 2.148e1

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3582
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3322
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37680
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.794e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.406e0

VQSLOD
type: SiteQuality
SIO_000300: -3.514e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.89e-1

DP
type: SiteQuality
SIO_000300: 3.013746e6

QD
type: SiteQuality
SIO_000300: 1.229e1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997062878379188e-5
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.23e-1

QD
type: SiteQuality
SIO_000300: 1.305e1

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.138e0

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.431e0

DP
type: SiteQuality
SIO_000300: 3.014062e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37679
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.39e-1

FS
type: SiteQuality
SIO_000300: 4.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.327e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.014144e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37678
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3140
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.174e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

QD
type: SiteQuality
SIO_000300: 1.079e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

FS
type: SiteQuality
SIO_000300: 1.292e0

DP
type: SiteQuality
SIO_000300: 3.014238e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2030
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.779010633379565e-4
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.077e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

DP
type: SiteQuality
SIO_000300: 3.014475e6

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 5278
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.202e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.73e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

FS
type: SiteQuality
SIO_000300: 9.215999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.014148e6

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 37678
bin: 9.75e1
variant carriers: 50

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
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variant carriers: 0

GenotypeQuality
all individuals: 5288
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3582
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495190146543199e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 30
allele frequency: 1.816860465116279e-3
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.537574476263694e-3
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.017704e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 8.19e-1

FS
type: SiteQuality
SIO_000300: 5.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.757e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.81e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.013463e6

InbreedingCoeff
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.124e1

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 2.008e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.013464e6

QD
type: SiteQuality
SIO_000300: 1.068e1

MQ
type: SiteQuality
SIO_000300: 5.887e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.16e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.182242183451373e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.917e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.62e-1

BaseQRankSum
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SIO_000300: 1.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2032
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variant carriers: 0

GenotypeQuality
all individuals: 3581
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
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allele frequency: 0.0e0
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East Asian
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Other
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South Asian
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Latino
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African
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European (Non-Finnish)
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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South Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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QD
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FS
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DP
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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Latino
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South Asian
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allele num: 16512
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European (Non-Finnish)
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allele frequency: 4.495190146543199e-5
allele num: 66738
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Other
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BaseQRankSum
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FS
type: SiteQuality
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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East Asian
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allele num: 8654
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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FS
type: SiteQuality
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ClippingRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498531439189594e-5
allele num: 66732
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Latino
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African
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South Asian
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European (Finnish)
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allele num: 6614
num of homozygotes: 0

East Asian
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MQRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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QD
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VQSLOD
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FS
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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South Asian
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Latino
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African
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ClippingRankSum
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QD
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FS
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MQ
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ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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Latino
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DP
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FS
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ClippingRankSum
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QD
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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Other
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African
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European (Non-Finnish)
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ReadPosRankSum
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QD
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MQ
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FS
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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Latino
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DP
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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ClippingRankSum
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QD
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