15-44085209-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085209
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085209
    reference: chr 15
allele count: 1
allele frequency: 9.232587340276238e-6
allele num: 108312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.2T>A
  hgvsp: ENSP00000394660.1:p.Met1?
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.2T>A
  hgvsp: ENSP00000386783.1:p.Met1?
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.44T>A
  hgvsp: ENSP00000386316.1:p.Met15Lys
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.44T>A
  hgvsp: ENSP00000387187.2:p.Met15Lys
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.2T>A
  hgvsp: ENSP00000384300.1:p.Met1?
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.2T>A
  hgvsp: ENSP00000386044.1:p.Met1?
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.91T>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.44T>A
  hgvsp: ENSP00000386290.1:p.Met15Lys
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.44T>A
  hgvsp: ENSP00000370764.1:p.Met15Lys
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.44T>A
  hgvsp: ENSP00000400178.1:p.Met15Lys
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.44T>A
  hgvsp: ENSP00000339647.5:p.Met15Lys
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.281T>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.-39T>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2377A>T
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.2T>A
  hgvsp: ENSP00000387041.1:p.Met1?
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.44T>A
  hgvsp: ENSP00000249786.4:p.Met15Lys
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.44T>A
  hgvsp: ENSP00000391027.1:p.Met15Lys
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

15-44085220-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085220
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085220
    reference: chr 15
allele count: 1
allele frequency: 9.041754823776199e-6
allele num: 110598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.55A>G
  hgvsp: ENSP00000249786.4:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.55A>G
  hgvsp: ENSP00000386316.1:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.55A>G
  hgvsp: ENSP00000400178.1:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.13A>G
  hgvsp: ENSP00000386044.1:p.Ser5Gly
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.55A>G
  hgvsp: ENSP00000370764.1:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.55A>G
  hgvsp: ENSP00000387187.2:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.13A>G
  hgvsp: ENSP00000384300.1:p.Ser5Gly
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.13A>G
  hgvsp: ENSP00000386783.1:p.Ser5Gly
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.55A>G
  hgvsp: ENSP00000339647.5:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.-28A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.13A>G
  hgvsp: ENSP00000387041.1:p.Ser5Gly
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.292A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2366T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.13A>G
  hgvsp: ENSP00000394660.1:p.Ser5Gly
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.55A>G
  hgvsp: ENSP00000391027.1:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.55A>G
  hgvsp: ENSP00000386290.1:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.102A>G
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser19Gly
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

15-44085221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085221
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085221
    reference: chr 15
allele count: 1
allele frequency: 9.030813134414622e-6
allele num: 110732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.14G>A
  hgvsp: ENSP00000384300.1:p.Ser5Asn
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.14G>A
  hgvsp: ENSP00000387041.1:p.Ser5Asn
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.56G>A
  hgvsp: ENSP00000387187.2:p.Ser19Asn
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.103G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.14G>A
  hgvsp: ENSP00000394660.1:p.Ser5Asn
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.56G>A
  hgvsp: ENSP00000339647.5:p.Ser19Asn
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.56G>A
  hgvsp: ENSP00000386290.1:p.Ser19Asn
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.56G>A
  hgvsp: ENSP00000386316.1:p.Ser19Asn
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2365C>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.-27G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.56G>A
  hgvsp: ENSP00000391027.1:p.Ser19Asn
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.56G>A
  hgvsp: ENSP00000400178.1:p.Ser19Asn
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.56G>A
  hgvsp: ENSP00000370764.1:p.Ser19Asn
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.14G>A
  hgvsp: ENSP00000386783.1:p.Ser5Asn
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.56G>A
  hgvsp: ENSP00000249786.4:p.Ser19Asn
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.293G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.14G>A
  hgvsp: ENSP00000386044.1:p.Ser5Asn
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8819
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser19Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

15-44085227-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085227
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085227
    reference: chr 15
allele count: 3
allele frequency: 2.695902228612509e-5
allele num: 111280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.20C>T
  hgvsp: ENSP00000387041.1:p.Ser7Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.62C>T
  hgvsp: ENSP00000339647.5:p.Ser21Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.20C>T
  hgvsp: ENSP00000386783.1:p.Ser7Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.20C>T
  hgvsp: ENSP00000384300.1:p.Ser7Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.62C>T
  hgvsp: ENSP00000370764.1:p.Ser21Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.62C>T
  hgvsp: ENSP00000386316.1:p.Ser21Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.62C>T
  hgvsp: ENSP00000400178.1:p.Ser21Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.62C>T
  hgvsp: ENSP00000249786.4:p.Ser21Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.62C>T
  hgvsp: ENSP00000391027.1:p.Ser21Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.62C>T
  hgvsp: ENSP00000386290.1:p.Ser21Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.20C>T
  hgvsp: ENSP00000386044.1:p.Ser7Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.20C>T
  hgvsp: ENSP00000394660.1:p.Ser7Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.109C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.62C>T
  hgvsp: ENSP00000387187.2:p.Ser21Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.299C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2359G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser21Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

15-44085228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085228
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085228
    reference: chr 15
allele count: 1
allele frequency: 8.971345522401449e-6
allele num: 111466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.21G>A
  hgvsp: ENST00000403425.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.-20G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.63G>A
  hgvsp: ENST00000339624.5:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.21G>A
  hgvsp: ENST00000409614.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.63G>A
  hgvsp: ENST00000448830.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.63G>A
  hgvsp: ENST00000249786.4:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.63G>A
  hgvsp: ENST00000409617.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2358C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.300G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.63G>A
  hgvsp: ENST00000381359.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.21G>A
  hgvsp: ENST00000409291.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.63G>A
  hgvsp: ENST00000409646.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.63G>A
  hgvsp: ENST00000445816.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.110G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.63G>A
  hgvsp: ENST00000409960.2:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.21G>A
  hgvsp: ENST00000402131.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.21G>A
  hgvsp: ENST00000430901.1:c.21G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser21Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

15-44085229-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085229
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085229
    reference: chr 15
allele count: 17
allele frequency: 1.524308233057762e-4
allele num: 111526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.64G>A
  hgvsp: ENSP00000249786.4:p.Val22Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.22G>A
  hgvsp: ENSP00000386783.1:p.Val8Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.64G>A
  hgvsp: ENSP00000339647.5:p.Val22Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2357C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.22G>A
  hgvsp: ENSP00000387041.1:p.Val8Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.64G>A
  hgvsp: ENSP00000391027.1:p.Val22Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.64G>A
  hgvsp: ENSP00000387187.2:p.Val22Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.64G>A
  hgvsp: ENSP00000386290.1:p.Val22Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.64G>A
  hgvsp: ENSP00000386316.1:p.Val22Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.22G>A
  hgvsp: ENSP00000394660.1:p.Val8Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.22G>A
  hgvsp: ENSP00000386044.1:p.Val8Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.111G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.64G>A
  hgvsp: ENSP00000370764.1:p.Val22Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.64G>A
  hgvsp: ENSP00000400178.1:p.Val22Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.22G>A
  hgvsp: ENSP00000384300.1:p.Val8Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.301G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.-19G>A
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41662
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9145
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Val22Ile
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

15-44085243-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085243
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085243
    reference: chr 15
allele count: 3
allele frequency: 2.700804839842273e-5
allele num: 111078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.78C>T
  hgvsp: ENST00000409646.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.36C>T
  hgvsp: ENST00000430901.1:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.78C>T
  hgvsp: ENST00000409617.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.36C>T
  hgvsp: ENST00000402131.1:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.36C>T
  hgvsp: ENST00000403425.1:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.125C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.78C>T
  hgvsp: ENST00000448830.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.78C>T
  hgvsp: ENST00000409960.2:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.36C>T
  hgvsp: ENST00000409614.1:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.78C>T
  hgvsp: ENST00000249786.4:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.78C>T
  hgvsp: ENST00000339624.5:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.78C>T
  hgvsp: ENST00000381359.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.36C>T
  hgvsp: ENST00000409291.1:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.-5C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.78C>T
  hgvsp: ENST00000445816.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2343G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.315C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9589
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg26Arg
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ

15-44085255-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085255
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085255
    reference: chr 15
allele count: 1
allele frequency: 9.134088417975885e-6
allele num: 109480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.48G>A
  hgvsp: ENST00000430901.1:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.90G>A
  hgvsp: ENST00000339624.5:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.48G>A
  hgvsp: ENST00000402131.1:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.48G>A
  hgvsp: ENST00000409614.1:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.48G>A
  hgvsp: ENST00000409291.1:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.90G>A
  hgvsp: ENST00000381359.1:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.137G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.48G>A
  hgvsp: ENST00000403425.1:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.90G>A
  hgvsp: ENST00000409646.1:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.90G>A
  hgvsp: ENST00000448830.1:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.8G>A
  hgvsp: ENSP00000471672.1:p.Gly3Asp
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.90G>A
  hgvsp: ENST00000445816.1:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.327G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.90G>A
  hgvsp: ENST00000409617.1:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.90G>A
  hgvsp: ENST00000409960.2:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.90G>A
  hgvsp: ENST00000249786.4:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2331C>T
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly3Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

15-44085261-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085261
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085261
    reference: chr 15
allele count: 4
allele frequency: 3.681478481758274e-5
allele num: 108652
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.143T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.96T>C
  hgvsp: ENST00000445816.1:c.96T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.96T>C
  hgvsp: ENST00000339624.5:c.96T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2325A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.54T>C
  hgvsp: ENST00000409291.1:c.54T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.54T>C
  hgvsp: ENST00000403425.1:c.54T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.96T>C
  hgvsp: ENST00000381359.1:c.96T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.96T>C
  hgvsp: ENST00000409646.1:c.96T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.54T>C
  hgvsp: ENST00000430901.1:c.54T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.54T>C
  hgvsp: ENST00000409614.1:c.54T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.14T>C
  hgvsp: ENSP00000471672.1:p.Leu5Pro
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.96T>C
  hgvsp: ENST00000249786.4:c.96T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.333T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.96T>C
  hgvsp: ENST00000409617.1:c.96T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.96T>C
  hgvsp: ENST00000409960.2:c.96T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.96T>C
  hgvsp: ENST00000448830.1:c.96T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.54T>C
  hgvsp: ENST00000402131.1:c.54T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu5Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

15-44085263-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085263
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085263
    reference: chr 15
allele count: 1
allele frequency: 9.270933768449159e-6
allele num: 107864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.98C>T
  hgvsp: ENSP00000386290.1:p.Ala33Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.16C>T
  hgvsp: ENST00000594896.1:c.16C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.98C>T
  hgvsp: ENSP00000391027.1:p.Ala33Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.98C>T
  hgvsp: ENSP00000386316.1:p.Ala33Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.56C>T
  hgvsp: ENSP00000386044.1:p.Ala19Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.56C>T
  hgvsp: ENSP00000386783.1:p.Ala19Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.98C>T
  hgvsp: ENSP00000370764.1:p.Ala33Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.56C>T
  hgvsp: ENSP00000394660.1:p.Ala19Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.98C>T
  hgvsp: ENSP00000249786.4:p.Ala33Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.98C>T
  hgvsp: ENSP00000387187.2:p.Ala33Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.98C>T
  hgvsp: ENSP00000400178.1:p.Ala33Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.56C>T
  hgvsp: ENSP00000387041.1:p.Ala19Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.98C>T
  hgvsp: ENSP00000339647.5:p.Ala33Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2323G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.145C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.335C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.56C>T
  hgvsp: ENSP00000384300.1:p.Ala19Val
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala33Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-44085267-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085267
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085267
    reference: chr 15
allele count: 1
allele frequency: 9.375058594116214e-6
allele num: 106666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.149C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.102C>T
  hgvsp: ENST00000249786.4:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.102C>T
  hgvsp: ENST00000409617.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.60C>T
  hgvsp: ENST00000409291.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.60C>T
  hgvsp: ENST00000402131.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.102C>T
  hgvsp: ENST00000445816.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.102C>T
  hgvsp: ENST00000409646.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.20C>T
  hgvsp: ENSP00000471672.1:p.Pro7Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.60C>T
  hgvsp: ENST00000409614.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.102C>T
  hgvsp: ENST00000448830.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.60C>T
  hgvsp: ENST00000403425.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.60C>T
  hgvsp: ENST00000430901.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.102C>T
  hgvsp: ENST00000339624.5:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.102C>T
  hgvsp: ENST00000381359.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.102C>T
  hgvsp: ENST00000409960.2:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.339C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2319G>A
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9412
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro7Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

15-44085270-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085270
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085270
    reference: chr 15
allele count: 1
allele frequency: 9.436276822616868e-6
allele num: 105974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.63C>T
  hgvsp: ENST00000430901.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.63C>T
  hgvsp: ENST00000409614.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.105C>T
  hgvsp: ENST00000445816.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.105C>T
  hgvsp: ENST00000409646.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.23C>T
  hgvsp: ENSP00000471672.1:p.Pro8Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.105C>T
  hgvsp: ENST00000448830.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.105C>T
  hgvsp: ENST00000381359.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.63C>T
  hgvsp: ENST00000402131.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.63C>T
  hgvsp: ENST00000409291.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.63C>T
  hgvsp: ENST00000403425.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.342C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.152C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.105C>T
  hgvsp: ENST00000249786.4:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2316G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.105C>T
  hgvsp: ENST00000339624.5:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.105C>T
  hgvsp: ENST00000409617.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.105C>T
  hgvsp: ENST00000409960.2:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro8Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-44085273-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085273
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085273
    reference: chr 15
allele count: 1
allele frequency: 9.523265337218826e-6
allele num: 105006
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2313G>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.108C>A
  hgvsp: ENST00000445816.1:c.108C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.108C>A
  hgvsp: ENST00000339624.5:c.108C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.66C>A
  hgvsp: ENST00000430901.1:c.66C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.108C>A
  hgvsp: ENST00000409646.1:c.108C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.108C>A
  hgvsp: ENST00000249786.4:c.108C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.345C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.66C>A
  hgvsp: ENST00000409291.1:c.66C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.66C>A
  hgvsp: ENST00000409614.1:c.66C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.66C>A
  hgvsp: ENST00000402131.1:c.66C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.108C>A
  hgvsp: ENST00000409617.1:c.108C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.108C>A
  hgvsp: ENST00000448830.1:c.108C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.26C>A
  hgvsp: ENSP00000471672.1:p.Ala9Glu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.66C>A
  hgvsp: ENST00000403425.1:c.66C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.108C>A
  hgvsp: ENST00000381359.1:c.108C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.108C>A
  hgvsp: ENST00000409960.2:c.108C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.155C>A
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala9Glu
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

15-44085289-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085289
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085289
    reference: chr 15
allele count: 1
allele frequency: 1.017459606853608e-5
allele num: 98284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.116+8C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.74+8C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+8C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.116+8C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+8C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.74+8C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+8C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+8C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.116+8C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.116+8C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+8C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+8C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.74+8C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.361C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2297G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.171C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.116+8C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.116+8C>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

15-44085291-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085291
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085291
    reference: chr 15
allele count: 1040
allele frequency: 1.076337141910912e-2
allele num: 96624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.116+10G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.116+10G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.74+10G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+10G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.173G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.116+10G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2295C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.74+10G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.363G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+10G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.116+10G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+10G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+10G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+10G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.116+10G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.74+10G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+10G>A
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 16590
  bin: 2.25e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 11218
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 3.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
num of homozygotes: 12
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

15-44085295-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085295
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085295
    reference: chr 15
allele count: 1
allele frequency: 1.043710599924853e-5
allele num: 95812
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2291C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+14G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.74+14G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.116+14G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.74+14G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+14G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.177G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.116+14G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.367G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.74+14G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+14G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+14G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.116+14G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+14G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.116+14G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.116+14G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+14G>C
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15996
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

15-44085296-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085296
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085296
    reference: chr 15
allele count: 1
allele frequency: 1.063309444314484e-5
allele num: 94046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.116+15G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.116+15G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+15G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+15G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.368G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.178G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.74+15G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+15G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+15G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.74+15G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2290C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+15G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+15G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.116+15G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.74+15G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.116+15G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.116+15G>A
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

15-44085300-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085300
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085300
    reference: chr 15
allele count: 1
allele frequency: 1.068718606390937e-5
allele num: 93570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.74+19G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2286C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+19G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.74+19G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.372G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+19G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.182G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.116+19G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.116+19G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.116+19G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.116+19G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+19G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+19G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+19G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.74+19G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.116+19G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+19G>A
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22014
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

15-44085322-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085322
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085322
    reference: chr 15
allele count: 1
allele frequency: 1.270486596366408e-5
allele num: 78710
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+41G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+41G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+41G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.116+41G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.74+41G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.116+41G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.74+41G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.204G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.116+41G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.116+41G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.394G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.116+41G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+41G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2264C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+41G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.74+41G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+41G>A
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16735
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

15-44085323-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085323
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085323
    reference: chr 15
allele count: 2
allele frequency: 2.56482597655749e-5
allele num: 77978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+42G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+42G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+42G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.74+42G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.205G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.74+42G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.116+42G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.395G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+42G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.116+42G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.116+42G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+42G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.74+42G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2263C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.116+42G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+42G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.116+42G>A
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-44085330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085330
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085330
    reference: chr 15
allele count: 3
allele frequency: 4.142845306156268e-5
allele num: 72414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.74+49C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+49C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2256G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.74+49C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.116+49C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.402C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+49C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.116+49C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.212C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.116+49C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+49C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.74+49C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.116+49C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+49C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+49C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+49C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.116+49C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

15-44085331-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085331
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085331
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 71584
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.116+50C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000475927
  gene symbol: SERF2
  hgvsc: ENST00000475927.1:n.403C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.213C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+50C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+50C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.74+50C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+50C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.116+50C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+50C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.74+50C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.116+50C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.116+50C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+50C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.74+50C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.116+50C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+2255G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+50C>G
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 19693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19326
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

15-44085726-A-AGACT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085726
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085730
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 21540
alternate allele: AGACT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-180_117-177dupACTG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-180_75-177dupACTG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+447_74+450dupACTG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-180_75-177dupACTG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.610_613dupACTG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-157_117-154dupACTG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+447_74+450dupACTG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-180_117-177dupACTG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-180_117-177dupACTG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-180_75-177dupACTG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+447_34+450dupACTG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+447_116+450dupACTG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+447_116+450dupACTG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1856_*439+1859dupAGTC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.117-46_117-43dupACTG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+447_116+450dupACTG
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

15-44085730-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085730
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085730
    reference: chr 15
allele count: 1
allele frequency: 4.624919063916382e-5
allele num: 21622
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1856A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-178T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-178T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.117-44T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-155T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+449T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+449T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-178T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-178T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-178T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+449T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+449T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.612T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-178T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+449T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+449T>G
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25908
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

15-44085737-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085737
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085737
    reference: chr 15
allele count: 1
allele frequency: 4.500855162480871e-5
allele num: 22218
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.117-37C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-171C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-171C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+456C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+456C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-148C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+456C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+456C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-171C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-171C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.619C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-171C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1849G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+456C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+456C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-171C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

15-44085742-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085742
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085742
    reference: chr 15
allele count: 1
allele frequency: 4.303296324984939e-5
allele num: 23238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+461G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+461G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.624G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.117-32G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-166G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+461G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-143G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-166G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-166G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-166G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1844C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-166G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-166G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+461G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+461G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+461G>C
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

15-44085750-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085750
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085750
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 25542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+469G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-158G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.117-24G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-158G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+469G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+469G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.632G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+469G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-135G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-158G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+469G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1836C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-158G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-158G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-158G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+469G>C
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16800
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

15-44085751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085751
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085751
    reference: chr 15
allele count: 1
allele frequency: 3.837593061631744e-5
allele num: 26058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-157C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+470C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+470C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-157C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+470C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-134C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-157C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+470C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-157C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-157C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.633C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+470C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1835G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.117-23C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+470C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-157C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

15-44085759-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085759
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085759
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 30038
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1827G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.117-15C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-149C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-149C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-126C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-149C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.641C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+478C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-149C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+478C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-149C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-149C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+478C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+478C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+478C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+478C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33414
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

15-44085764-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085764
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085764
    reference: chr 15
allele count: 2
allele frequency: 5.996282304970918e-5
allele num: 33354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-144G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-144G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.117-10G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+483G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+483G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-121G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.646G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+483G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-144G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-144G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+483G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1822C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-144G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-144G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+483G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+483G>A
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34275
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

15-44085766-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085766
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085766
    reference: chr 15
allele count: 9
allele frequency: 2.569079698561316e-4
allele num: 35032
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.648T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+485T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+485T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1820A>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-142T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+485T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-142T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-142T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+485T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+485T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-142T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.117-8T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-142T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-142T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-119T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+485T>C
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34421
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5701
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.117-8T>C
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

15-44085767-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085767
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085767
    reference: chr 15
allele count: 1
allele frequency: 2.805678693676e-5
allele num: 35642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-141C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+486C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.649C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+486C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-141C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-141C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-118C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+486C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-141C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+486C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-141C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.117-7C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1819G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+486C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+486C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-141C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.117-7C>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

15-44085772-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085772
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085772
    reference: chr 15
allele count: 2
allele frequency: 4.734848484848485e-5
allele num: 42240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+491A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1814T>C
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.117-2A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+491A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-136A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-136A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+491A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+491A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+491A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-113A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-136A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.654A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-136A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-136A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-136A>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+491A>G
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.117-2A>G
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

15-44085781-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085781
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085781
    reference: chr 15
allele count: 111
allele frequency: 1.989889211573626e-3
allele num: 55782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-127G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-127G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-127G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+500G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.663G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+500G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+500G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+500G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.124G>A
  hgvsp: ENSP00000387187.2:p.Val42Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-104G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-127G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-127G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1805C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+500G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+500G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-127G>A
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 1.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29014
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val42Ile
num of homozygotes: 1
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

15-44085781-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085781
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085781
    reference: chr 15
allele count: 1
allele frequency: 1.792692983399663e-5
allele num: 55782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.663G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1805C>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+500G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-127G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+500G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.124G>C
  hgvsp: ENSP00000387187.2:p.Val42Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+500G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-127G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+500G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-127G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+500G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-104G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+500G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-127G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-127G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-127G>C
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29014
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val42Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

15-44085790-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085790
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085790
    reference: chr 15
allele count: 1
allele frequency: 1.372608230158948e-5
allele num: 72854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-118C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.133C>T
  hgvsp: ENSP00000387187.2:p.Pro45Ser
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-118C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+509C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-118C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1796G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+509C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+509C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-118C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.672C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-118C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+509C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+509C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+509C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-95C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-118C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro45Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-44085801-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085801
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085801
    reference: chr 15
allele count: 1
allele frequency: 1.054807814016286e-5
allele num: 94804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-107A>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+520A>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-107A>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-107A>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-107A>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+520A>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+520A>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+520A>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.683A>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.144A>T
  hgvsp: ENSP00000387187.2:p.Glu48Asp
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-84A>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-107A>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1785T>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+520A>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+520A>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-107A>T
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu48Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

15-44085808-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085808
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085808
    reference: chr 15
allele count: 1
allele frequency: 9.755716850074144e-6
allele num: 102504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-100C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-100C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-100C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+527C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-100C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+527C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-100C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-77C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.690C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.151C>T
  hgvsp: ENSP00000387187.2:p.Pro51Ser
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+527C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+527C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+527C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+527C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-100C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1778G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro51Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-44085816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085816
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085816
    reference: chr 15
allele count: 1
allele frequency: 9.015506671474937e-6
allele num: 110920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+535C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+535C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+535C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-92C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1770G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-92C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.698C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-92C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.159C>T
  hgvsp: ENST00000409960.2:c.159C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-92C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+535C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-69C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+535C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-92C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+535C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-92C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His53His
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

15-44085817-T-TTCCATC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085817
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085823
    reference: chr 15
allele count: 1
allele frequency: 8.956721123531098e-6
allele num: 111648
alternate allele: TTCCATC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-89_75-84dupCCATCT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+538_116+543dupCCATCT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-89_75-84dupCCATCT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+538_74+543dupCCATCT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+538_74+543dupCCATCT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+538_116+543dupCCATCT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.162_167dupCCATCT
  hgvsp: ENSP00000387187.2:p.His55_Leu56dup
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-89_117-84dupCCATCT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-66_117-61dupCCATCT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-89_117-84dupCCATCT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.701_706dupCCATCT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+538_116+543dupCCATCT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-89_75-84dupCCATCT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-89_117-84dupCCATCT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+538_34+543dupCCATCT
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39526
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His55_Leu56dup
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-44085823-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085823
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085823
    reference: chr 15
allele count: 3
allele frequency: 2.602540079117218e-5
allele num: 115272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-85C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-85C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-85C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+542C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-85C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1763G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.166C>T
  hgvsp: ENSP00000387187.2:p.Leu56Phe
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-62C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+542C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-85C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.705C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-85C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+542C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+542C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+542C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+542C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu56Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

15-44085826-A-ATCCTTTGTGCCCTTCATCCCCCTGCATCTTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085826
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085857
    reference: chr 15
allele count: 3
allele frequency: 2.574444349094654e-5
allele num: 116530
alternate allele: ATCCTTTGTGCCCTTCATCCCCCTGCATCTTG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsp: ENSP00000387187.2:p.Phe69LeufsTer47
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Phe69LeufsTer47
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

15-44085827-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085827
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085827
    reference: chr 15
allele count: 1
allele frequency: 8.551686392556613e-6
allele num: 116936
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-58T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1759A>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.170T>C
  hgvsp: ENSP00000387187.2:p.Ile57Thr
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.709T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-81T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-81T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-81T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+546T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+546T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+546T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+546T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-81T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+546T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-81T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-81T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+546T>C
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile57Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/15-44085829-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085829
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085829
    reference: chr 15
allele count: 1
allele frequency: 8.506873553831496e-6
allele num: 117552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+548C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-56C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.172C>A
  hgvsp: ENSP00000387187.2:p.Leu58Ile
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-79C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-79C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+548C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1757G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+548C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-79C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-79C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.711C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-79C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+548C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-79C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+548C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+548C>A
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu58Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

15-44085836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085836
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085836
    reference: chr 15
allele count: 1
allele frequency: 8.408731626921395e-6
allele num: 118924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-72C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-49C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-72C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-72C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.718C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+555C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-72C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+555C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-72C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-72C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1750G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+555C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+555C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.179C>T
  hgvsp: ENSP00000387187.2:p.Ala60Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+555C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+555C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala60Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-44085837-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085837
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085837
    reference: chr 15
allele count: 1
allele frequency: 8.391937026904549e-6
allele num: 119162
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.180C>A
  hgvsp: ENST00000409960.2:c.180C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+556C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-48C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-71C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-71C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.719C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-71C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+556C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-71C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1749G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-71C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+556C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-71C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+556C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+556C>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+556C>A
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala60Ala
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

15-44085845-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085845
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085845
    reference: chr 15
allele count: 1
allele frequency: 8.310341388824253e-6
allele num: 120332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.727C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+564C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.188C>G
  hgvsp: ENSP00000387187.2:p.Pro63Arg
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+564C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+564C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+564C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-63C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-63C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-63C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1741G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-63C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-63C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-63C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-40C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+564C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+564C>G
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro63Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

15-44085851-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085851
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085851
    reference: chr 15
allele count: 1
allele frequency: 8.269246671628215e-6
allele num: 120930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-57C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+570C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.733C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.194C>T
  hgvsp: ENSP00000387187.2:p.Ala65Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1735G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-57C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-57C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-57C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+570C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+570C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-57C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-57C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+570C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-34C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+570C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+570C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala65Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

15-44085856-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085856
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085856
    reference: chr 15
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-52T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+575T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-52T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-52T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-29T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1730A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-52T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+575T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+575T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.199T>C
  hgvsp: ENSP00000387187.2:p.Cys67Arg
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-52T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+575T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.738T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-52T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+575T>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+575T>C
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys67Arg
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

15-44085859-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085859
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085859
    reference: chr 15
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-49C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+578C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.202C>G
  hgvsp: ENSP00000387187.2:p.Pro68Ala
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1727G>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221792
  ensembl transcript: ENST00000408865
  gene symbol: MIR1282
  hgvsc: ENST00000408865.1:n.99G>C
  variant of: http://identifiers.org/hgnc/35360
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+578C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+578C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+578C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-49C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+578C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-49C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-49C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.741C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+578C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-26C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-49C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-49C>G
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro68Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

15-44085868-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085868
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085868
    reference: chr 15
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-40C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-40C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-40C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.750C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-40C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.211C>T
  hgvsp: ENSP00000387187.2:p.Pro71Ser
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-40C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+587C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1718G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+587C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221792
  ensembl transcript: ENST00000408865
  gene symbol: MIR1282
  hgvsc: ENST00000408865.1:n.90G>A
  variant of: http://identifiers.org/hgnc/35360
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-17C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+587C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+587C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+587C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+587C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-40C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro71Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

15-44085878-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085878
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085878
    reference: chr 15
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-30C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+597C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221792
  ensembl transcript: ENST00000408865
  gene symbol: MIR1282
  hgvsc: ENST00000408865.1:n.80G>A
  variant of: http://identifiers.org/hgnc/35360
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.221C>T
  hgvsp: ENSP00000387187.2:p.Pro74Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-7C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-30C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1708G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-30C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+597C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+597C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+597C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.760C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-30C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-30C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+597C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+597C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-30C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro74Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

15-44085882-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085882
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085882
    reference: chr 15
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+601C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-26C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+601C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1704G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+601C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.225C>T
  hgvsp: ENST00000409960.2:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+601C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-26C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-26C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221792
  ensembl transcript: ENST00000408865
  gene symbol: MIR1282
  hgvsc: ENST00000408865.1:n.76G>A
  variant of: http://identifiers.org/hgnc/35360
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-26C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.117-3C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+601C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-26C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+601C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.764C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-26C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.117-3C>T
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

15-44085887-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085887
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085887
    reference: chr 15
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+606C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-21C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1699G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.119C>T
  hgvsp: ENSP00000339647.5:p.Ala40Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+606C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-21C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-21C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221792
  ensembl transcript: ENST00000408865
  gene symbol: MIR1282
  hgvsc: ENST00000408865.1:n.71G>A
  variant of: http://identifiers.org/hgnc/35360
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+606C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-21C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.230C>T
  hgvsp: ENSP00000387187.2:p.Ala77Val
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+606C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+606C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-21C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+606C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-21C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.769C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala77Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

15-44085888-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085888
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085888
    reference: chr 15
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.120C>T
  hgvsp: ENST00000339624.5:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221792
  ensembl transcript: ENST00000408865
  gene symbol: MIR1282
  hgvsc: ENST00000408865.1:n.70G>A
  variant of: http://identifiers.org/hgnc/35360
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+607C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-20C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+607C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.231C>T
  hgvsp: ENST00000409960.2:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+607C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-20C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.770C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1698G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+607C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+607C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-20C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-20C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-20C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-20C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+607C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala77Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

15-44085893-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085893
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085893
    reference: chr 15
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-15C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-15C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1693G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-15C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+612C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+612C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221792
  ensembl transcript: ENST00000408865
  gene symbol: MIR1282
  hgvsc: ENST00000408865.1:n.65G>C
  variant of: http://identifiers.org/hgnc/35360
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.236C>G
  hgvsp: ENSP00000387187.2:p.Ser79Ter
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-15C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+612C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.125C>G
  hgvsp: ENSP00000339647.5:p.Ser42Ter
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-15C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+612C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-15C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.775C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+612C>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+612C>G
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser79Ter
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

15-44085899-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085899
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085898
    reference: chr 15
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.117-8delA
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1686delT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+619delA
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+619delA
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+619delA
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.243delA
  hgvsp: ENSP00000387187.2:p.Pro83GlnfsTer50
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.75-8delA
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.782delA
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.132delA
  hgvsp: ENSP00000339647.5:p.Pro46GlnfsTer50
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.117-8delA
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+619delA
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000221792
  ensembl transcript: ENST00000408865
  gene symbol: MIR1282
  hgvsc: ENST00000408865.1:n.58delT
  variant of: http://identifiers.org/hgnc/35360
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.75-8delA
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.75-8delA
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.117-8delA
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+619delA
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+619delA
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro83GlnfsTer50
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: TA
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

15-44085948-GAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085948
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085945
    reference: chr 15
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+673_74+675delAAG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+673_116+675delAAG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.121_123delAAG
  hgvsp: ENSP00000384300.1:p.Lys41del
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+673_34+675delAAG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: mature_miRNA_variant
  ensembl gene: ENSG00000221792
  ensembl transcript: ENST00000408865
  gene symbol: MIR1282
  hgvsc: ENST00000408865.1:n.7_9delTCT
  variant of: http://identifiers.org/hgnc/35360
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.121_123delAAG
  hgvsp: ENSP00000386044.1:p.Lys41del
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.163_165delAAG
  hgvsp: ENSP00000249786.4:p.Lys55del
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.163_165delAAG
  hgvsp: ENSP00000370764.1:p.Lys55del
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1635_*439+1637delTCT
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.297_299delAAG
  hgvsp: ENSP00000387187.2:p.Arg101del
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.163_165delAAG
  hgvsp: ENSP00000400178.1:p.Lys55del
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.186_188delAAG
  hgvsp: ENSP00000339647.5:p.Arg64del
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+673_116+675delAAG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+673_116+675delAAG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.836_838delAAG
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.121_123delAAG
  hgvsp: ENSP00000386783.1:p.Lys41del
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+673_74+675delAAG
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13508
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg101del
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: GAGA
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

15-44085965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085965
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085965
    reference: chr 15
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+684C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.174C>T
  hgvsp: ENST00000249786.4:c.174C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1621G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.174C>T
  hgvsp: ENST00000445816.1:c.174C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.132C>T
  hgvsp: ENST00000403425.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.132C>T
  hgvsp: ENST00000402131.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.847C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+684C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.308C>T
  hgvsp: ENSP00000387187.2:p.Pro103Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.197C>T
  hgvsp: ENSP00000339647.5:p.Pro66Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+684C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.174C>T
  hgvsp: ENST00000381359.1:c.174C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+684C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.132C>T
  hgvsp: ENST00000409614.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+684C>T
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+684C>T
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro103Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS

15-44085976-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085976
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085976
    reference: chr 15
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.208G>C
  hgvsp: ENSP00000339647.5:p.Val70Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.*5G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+695G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.858G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+695G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.*5G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.*5G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.*5G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1610C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+695G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.*5G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.319G>C
  hgvsp: ENSP00000387187.2:p.Val107Leu
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+695G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+695G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.*5G>C
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+695G>C
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42815
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val107Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

15-44085981-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085981
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085981
    reference: chr 15
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.863T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+700T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+700T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.*10T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+700T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.324T>G
  hgvsp: ENST00000409960.2:c.324T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.*10T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+700T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.*10T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.*10T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.213T>G
  hgvsp: ENST00000339624.5:c.213T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+700T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+700T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.*10T>G
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1605A>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.*10T>G
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala108Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

15-44085983-CGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085983
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085981
    reference: chr 15
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+705_74+706delGT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+705_116+706delGT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.*15_*16delGT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.868_869delGT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.*15_*16delGT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.*15_*16delGT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+705_116+706delGT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+705_34+706delGT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.*15_*16delGT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.218_219delGT
  hgvsp: ENSP00000339647.5:p.Cys73SerfsTer85
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+705_116+706delGT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.329_330delGT
  hgvsp: ENSP00000387187.2:p.Cys110SerfsTer85
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.*15_*16delGT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+705_74+706delGT
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1601_*439+1602delAC
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.*15_*16delGT
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys110SerfsTer85
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: CGT
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

15-44085984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44085984
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 44085984
    reference: chr 15
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386044
  ensembl transcript: ENST00000402131
  gene symbol: SERF2
  hgvsc: ENST00000402131.1:c.*13G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387041
  ensembl transcript: ENST00000409291
  gene symbol: SERF2
  hgvsc: ENST00000409291.1:c.74+703G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000384300
  ensembl transcript: ENST00000403425
  gene symbol: SERF2
  hgvsc: ENST00000403425.1:c.*13G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000140264
  ensembl transcript: ENST00000486144
  gene symbol: SERF2
  hgvsc: ENST00000486144.1:n.866G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386783
  ensembl transcript: ENST00000409614
  gene symbol: SERF2
  hgvsc: ENST00000409614.1:c.*13G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000471672
  ensembl transcript: ENST00000594896
  gene symbol: SERF2
  hgvsc: ENST00000594896.1:c.34+703G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000249786
  ensembl transcript: ENST00000249786
  gene symbol: SERF2
  hgvsc: ENST00000249786.4:c.*13G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386316
  ensembl transcript: ENST00000409646
  gene symbol: SERF2
  hgvsc: ENST00000409646.1:c.116+703G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000386290
  ensembl transcript: ENST00000409617
  gene symbol: SERF2
  hgvsc: ENST00000409617.1:c.116+703G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000387187
  ensembl transcript: ENST00000409960
  gene symbol: SERF2
  hgvsc: ENST00000409960.2:c.327G>A
  hgvsp: ENST00000409960.2:c.327G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000339647
  ensembl transcript: ENST00000339624
  gene symbol: SERF2
  hgvsc: ENST00000339624.5:c.216G>A
  hgvsp: ENST00000339624.5:c.216G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000400178
  ensembl transcript: ENST00000445816
  gene symbol: SERF2
  hgvsc: ENST00000445816.1:c.*13G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000370764
  ensembl transcript: ENST00000381359
  gene symbol: SERF2
  hgvsc: ENST00000381359.1:c.*13G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000262560
  ensembl protein: ENSP00000415219
  ensembl transcript: ENST00000417761
  gene symbol: RP11-296A16.1
  hgvsc: ENST00000417761.2:c.*439+1602C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000391027
  ensembl transcript: ENST00000448830
  gene symbol: SERF2
  hgvsc: ENST00000448830.1:c.116+703G>A
  variant of: http://identifiers.org/hgnc/10757
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000140264
  ensembl protein: ENSP00000394660
  ensembl transcript: ENST00000430901
  gene symbol: SERF2
  hgvsc: ENST00000430901.1:c.74+703G>A
  variant of: http://identifiers.org/hgnc/10757
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser109Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum

GenotypeDepth
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1356
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 622
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 41637
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1499
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8178
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 114
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45197
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6980
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 794
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15030
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.664170411050091e-5
allele num: 60090
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.282e-1

QD
type: SiteQuality
SIO_000300: 1.016e1

MQ
type: SiteQuality
SIO_000300: 5.871e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.07e-1

DP
type: SiteQuality
SIO_000300: 1.275922e6

GenotypeDepth
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1546
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41818
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8803
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 34
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 354
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1411
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6058
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.632813010254066e-5
allele num: 61244
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: 3.34e-1

ClippingRankSum
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ReadPosRankSum
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FS
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.630789302022179e-5
allele num: 61320
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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BaseQRankSum
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DP
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ClippingRankSum
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SIO_000300: -6.3e-1

MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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SIO_000300: 1.028e1

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.693671509480424e-4
allele num: 8122
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5670
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61590
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.749999999999999e-2

FS
type: SiteQuality
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MQRankSum
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SIO_000300: -2.97e-1

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -7.0e-4

DP
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BaseQRankSum
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SIO_000300: -1.33e0

QD
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SIO_000300: 7.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.621271076523995e-5
allele num: 61680
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10590
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15406
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -7.0e-4

ClippingRankSum
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QD
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MQ
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 1.298532658096351e-4
allele num: 15402
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.240335698778393e-5
allele num: 61722
num of homozygotes: 0

European (Finnish)
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allele frequency: 1.054111033028812e-3
allele num: 5692
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East Asian
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allele count: 7
allele frequency: 8.59317456420329e-4
allele num: 8146
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QD
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ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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BaseQRankSum
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
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num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.897893338394382e-4
allele num: 10538
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 1.097213078779899e-4
allele num: 9114
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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DP
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MQ
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South Asian
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Latino
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East Asian
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African
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European (Finnish)
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Other
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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QD
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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African
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Latino
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
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MQ
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QD
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ClippingRankSum
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Latino
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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East Asian
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MQ
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VQSLOD
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African
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VQSLOD
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South Asian
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.76132521974307e-5
allele num: 14790
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.8e-3

MQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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BaseQRankSum
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QD
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FS
type: SiteQuality
SIO_000300: 3.043e0

ClippingRankSum
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SIO_000300: 9.7e-2

MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54408
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.393922497909116e-4
allele num: 7174
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: 9.0e-2

ClippingRankSum
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ReadPosRankSum
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QD
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SIO_000300: 1.547e1

InbreedingCoeff
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SIO_000300: -3.6e-3

BaseQRankSum
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SIO_000300: -2.819e0

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.041287e6

GenotypeDepth
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variant carriers: 242

GenotypeDepth
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variant carriers: 32

GenotypeDepth
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variant carriers: 131

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 338
allele frequency: 6.331485089165293e-3
allele num: 53384
num of homozygotes: 3

Other
type: Population
allele count: 7
allele frequency: 9.943181818181818e-3
allele num: 704
num of homozygotes: 0

South Asian
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allele count: 153
allele frequency: 1.080508474576271e-2
allele num: 14160
num of homozygotes: 1

East Asian
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allele count: 298
allele frequency: 4.230550823395798e-2
allele num: 7044
num of homozygotes: 5

Latino
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allele count: 19
allele frequency: 2.261904761904762e-3
allele num: 8400
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.496259351620948e-3
allele num: 8020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 213
allele frequency: 4.336319218241042e-2
allele num: 4912
num of homozygotes: 3

VQSLOD
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SIO_000300: 6.13e0

FS
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QD
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MQ
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SIO_000300: 6.0e1

DP
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SIO_000300: 1.006242e6

ReadPosRankSum
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SIO_000300: 3.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

InbreedingCoeff
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SIO_000300: 9.7e-3

BaseQRankSum
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SIO_000300: -6.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 344
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 1.198465963566635e-4
allele num: 8344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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MQRankSum
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SIO_000300: -4.72e-1

MQ
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ClippingRankSum
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FS
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QD
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 1
allele frequency: 7.184940364994971e-5
allele num: 13918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6776
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 51926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4730
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VQSLOD
type: SiteQuality
SIO_000300: 7.09e-1

ReadPosRankSum
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MQRankSum
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FS
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QD
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DP
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 407
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
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East Asian
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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Latino
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East Asian
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Other
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VQSLOD
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MQRankSum
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MQ
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FS
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
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DP
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SIO_000300: 7.88311e5

FS
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ClippingRankSum
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VQSLOD
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QD
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MQ
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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South Asian
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Latino
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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Other
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FS
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VQSLOD
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QD
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MQ
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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VQSLOD
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MQ
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QD
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FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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allele num: 12610
num of homozygotes: 0

African
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MQRankSum
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InbreedingCoeff
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QD
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SIO_000300: 1.39e1

MQ
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VQSLOD
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ClippingRankSum
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FS
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SIO_000300: 2.963e0

BaseQRankSum
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SIO_000300: -2.133e0

ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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African
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Latino
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InbreedingCoeff
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QD
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FS
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MQ
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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African
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VQSLOD
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MQ
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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QD
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DP
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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MQRankSum
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FS
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BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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African
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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FS
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VQSLOD
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QD
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DP
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

East Asian
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allele frequency: 8.880994671403197e-4
allele num: 2252
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2890
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 19638
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.33982e5

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.799e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.81e-2

VQSLOD
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SIO_000300: -6.99e-2

ReadPosRankSum
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SIO_000300: -3.77e-1

FS
type: SiteQuality
SIO_000300: 7.397e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.32e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 3
allele frequency: 1.704545454545454e-3
allele num: 1760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3062
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 2.912904165452956e-4
allele num: 20598
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2386
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.068e0

ClippingRankSum
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MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: 1.42e-2

QD
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VQSLOD
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BaseQRankSum
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SIO_000300: 1.75e0

MQRankSum
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SIO_000300: 2.78e-1

ReadPosRankSum
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SIO_000300: 2.09e-1

DP
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SIO_000300: 6.48911e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2458
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2968
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20982
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 3.215434083601286e-4
allele num: 3110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.167e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 1.52e0

BaseQRankSum
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SIO_000300: -2.051e0

MQ
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SIO_000300: 6.0e1

MQRankSum
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SIO_000300: -1.292e0

InbreedingCoeff
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SIO_000300: -1.66e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.519e0

DP
type: SiteQuality
SIO_000300: 6.58658e5

QD
type: SiteQuality
SIO_000300: 1.335e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3056
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.482294935006724e-4
allele num: 4462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3858
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
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MQRankSum
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SIO_000300: 1.28e0

FS
type: SiteQuality
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ClippingRankSum
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SIO_000300: -4.7e-1

BaseQRankSum
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DP
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SIO_000300: 7.19052e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.28e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.94e-1

GenotypeDepth
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variant carriers: 22

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 13
allele frequency: 2.345723565499819e-3
allele num: 5542
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 450
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 8.183306055646482e-4
allele num: 3666
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 95
allele frequency: 2.889294403892944e-3
allele num: 32880
num of homozygotes: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3936
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ClippingRankSum
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SIO_000300: 1.44e-1

MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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DP
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FS
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BaseQRankSum
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MQ
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3666
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4084
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.804402742692169e-4
allele num: 5542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3936
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 32880
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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DP
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 7092
num of homozygotes: 0

European (Non-Finnish)
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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FS
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DP
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MQRankSum
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MQ
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BaseQRankSum
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QD
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele num: 54704
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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Other
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East Asian
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MQRankSum
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

African
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allele count: 0
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East Asian
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allele frequency: 0.0e0
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Latino
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
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SIO_000300: 1.242607e6

BaseQRankSum
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SIO_000300: -1.448e0

InbreedingCoeff
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SIO_000300: -3.0e-4

MQRankSum
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VQSLOD
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QD
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FS
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SIO_000300: 6.24e-1

ClippingRankSum
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SIO_000300: -1.38e-1

ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 9618
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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DP
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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ClippingRankSum
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QD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
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European (Finnish)
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South Asian
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East Asian
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Latino
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African
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Other
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DP
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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African
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Other
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European (Finnish)
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QD
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MQRankSum
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MQ
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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Other
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Latino
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VQSLOD
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FS
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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QD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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European (Finnish)
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African
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Other
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QD
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DP
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MQ
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InbreedingCoeff
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FS
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Non-Finnish)
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Latino
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Other
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BaseQRankSum
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DP
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QD
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MQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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South Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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ClippingRankSum
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QD
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MQ
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VQSLOD
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FS
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MQRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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East Asian
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African
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Latino
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European (Finnish)
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FS
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VQSLOD
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QD
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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VQSLOD
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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QD
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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DP
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QD
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InbreedingCoeff
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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Latino
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European (Finnish)
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BaseQRankSum
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MQRankSum
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MQ
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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Other
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Latino
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African
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FS
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ClippingRankSum
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QD
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Finnish)
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South Asian
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African
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MQ
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeQuality
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South Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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MQ
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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African
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MQ
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QD
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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DP
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African
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QD
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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FS
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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DP
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MQ
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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ReadPosRankSum
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QD
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MQ
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DP
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4030
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.26e0

QD
type: SiteQuality
SIO_000300: 1.297e1

VQSLOD
type: SiteQuality
SIO_000300: 5.629999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.434224e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 8.0e-1

GenotypeDepth
all individuals: 5
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13547
bin: 2.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 494
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GenotypeDepth
all individuals: 27
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GenotypeDepth
all individuals: 9
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 4029
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54662
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0538e1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.895e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

QD
type: SiteQuality
SIO_000300: 1.358e1

VQSLOD
type: SiteQuality
SIO_000300: -1.816e0

DP
type: SiteQuality
SIO_000300: 1.434027e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.38e-1

GenotypeDepth
all individuals: 13554
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42798
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 492
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variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3449
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variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 54663
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.912e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.434136e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.414e0

FS
type: SiteQuality
SIO_000300: 8.119999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.89e0

GenotypeDepth
all individuals: 9
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 42796
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variant carriers: 0

GenotypeDepth
all individuals: 0
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variant carriers: 0

GenotypeDepth
all individuals: 13552
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 493
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4035
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variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54646
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variant carriers: 0

GenotypeQuality
all individuals: 532
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.823e1

FS
type: SiteQuality
SIO_000300: 3.895e0

DP
type: SiteQuality
SIO_000300: 1.434006e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.53e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.002e0

GenotypeDepth
all individuals: 17
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variant carriers: 0

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
all individuals: 13550
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variant carriers: 0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeDepth
all individuals: 5
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variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
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variant carriers: 0

GenotypeDepth
all individuals: 10
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variant carriers: 1

GenotypeDepth
all individuals: 0
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variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
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GenotypeDepth
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 54659
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GenotypeQuality
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GenotypeQuality
all individuals: 720
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
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variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 4033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.434101e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.623e0