10-128153451-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153451
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153451
    reference: chr 10
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1207C>A
  hgvsp: ENSP00000349318.3:p.Pro403Thr
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1639C>A
  hgvsp: ENSP00000444369.1:p.Pro547Thr
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1348C>A
  hgvsp: ENSP00000405995.1:p.Pro450Thr
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1348C>A
  hgvsp: ENSP00000284694.7:p.Pro450Thr
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3297C>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3297C>A
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7955
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4264
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11764
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro450Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

10-128153455-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153455
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153455
    reference: chr 10
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1344C>T
  hgvsp: ENST00000432642.1:c.1344C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3301C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1344C>T
  hgvsp: ENST00000284694.7:c.1344C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1203C>T
  hgvsp: ENST00000356858.3:c.1203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1635C>T
  hgvsp: ENST00000544758.1:c.1635C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3301C>T
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 23563
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genotype quality: GenotypeQuality
  all individuals: 4264
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11764
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Phe448Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

10-128153460-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153460
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153460
    reference: chr 10
allele count: 10
allele frequency: 8.23696089090969e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1339C>T
  hgvsp: ENSP00000405995.1:p.His447Tyr
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3306C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1630C>T
  hgvsp: ENSP00000444369.1:p.His544Tyr
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1339C>T
  hgvsp: ENSP00000284694.7:p.His447Tyr
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1198C>T
  hgvsp: ENSP00000349318.3:p.His400Tyr
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3306C>T
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7912
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His447Tyr
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

10-128153468-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153468
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153468
    reference: chr 10
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1331C>T
  hgvsp: ENSP00000284694.7:p.Pro444Leu
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1331C>T
  hgvsp: ENSP00000405995.1:p.Pro444Leu
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1190C>T
  hgvsp: ENSP00000349318.3:p.Pro397Leu
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3314C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1622C>T
  hgvsp: ENSP00000444369.1:p.Pro541Leu
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3314C>T
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7949
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4985
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro444Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ

10-128153469-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153469
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153469
    reference: chr 10
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1330C>T
  hgvsp: ENSP00000284694.7:p.Pro444Ser
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1189C>T
  hgvsp: ENSP00000349318.3:p.Pro397Ser
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3315C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3315C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1330C>T
  hgvsp: ENSP00000405995.1:p.Pro444Ser
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1621C>T
  hgvsp: ENSP00000444369.1:p.Pro541Ser
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23603
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2970
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7950
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro444Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

10-128153471-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153471
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153471
    reference: chr 10
allele count: 97
allele frequency: 7.99011532125206e-4
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3317A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1328A>G
  hgvsp: ENSP00000284694.7:p.Lys443Arg
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1328A>G
  hgvsp: ENSP00000405995.1:p.Lys443Arg
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1187A>G
  hgvsp: ENSP00000349318.3:p.Lys396Arg
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3317A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1619A>G
  hgvsp: ENSP00000444369.1:p.Lys540Arg
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7907
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13534
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 8663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 7946
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4978
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys443Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-128153475-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153475
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153475
    reference: chr 10
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1324C>T
  hgvsp: ENSP00000284694.7:p.Gln442Ter
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1183C>T
  hgvsp: ENSP00000349318.3:p.Gln395Ter
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1615C>T
  hgvsp: ENSP00000444369.1:p.Gln539Ter
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3321C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1324C>T
  hgvsp: ENSP00000405995.1:p.Gln442Ter
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3321C>T
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2970
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23647
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11696
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln442Ter
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-128153480-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153480
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153480
    reference: chr 10
allele count: 3
allele frequency: 2.471169686985173e-5
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1319T>C
  hgvsp: ENSP00000405995.1:p.Val440Ala
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3326T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3326T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1610T>C
  hgvsp: ENSP00000444369.1:p.Val537Ala
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1178T>C
  hgvsp: ENSP00000349318.3:p.Val393Ala
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1319T>C
  hgvsp: ENSP00000284694.7:p.Val440Ala
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2970
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23652
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4983
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val440Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

10-128153481-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153481
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153481
    reference: chr 10
allele count: 3
allele frequency: 2.471128976458378e-5
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1318G>C
  hgvsp: ENSP00000284694.7:p.Val440Leu
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1318G>C
  hgvsp: ENSP00000405995.1:p.Val440Leu
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3327G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1609G>C
  hgvsp: ENSP00000444369.1:p.Val537Leu
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1177G>C
  hgvsp: ENSP00000349318.3:p.Val393Leu
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3327G>C
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4983
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11693
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val440Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/10-128153485-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153485
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153485
    reference: chr 10
allele count: 3
allele frequency: 2.471128976458378e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1314T>G
  hgvsp: ENST00000432642.1:c.1314T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1605T>G
  hgvsp: ENST00000544758.1:c.1605T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3331T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1173T>G
  hgvsp: ENST00000356858.3:c.1173T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1314T>G
  hgvsp: ENST00000284694.7:c.1314T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3331T>G
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11694
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7963
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro438Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

10-128153499-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153499
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153499
    reference: chr 10
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1300A>T
  hgvsp: ENSP00000405995.1:p.Thr434Ser
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1300A>T
  hgvsp: ENSP00000284694.7:p.Thr434Ser
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3345A>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3345A>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1591A>T
  hgvsp: ENSP00000444369.1:p.Thr531Ser
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1159A>T
  hgvsp: ENSP00000349318.3:p.Thr387Ser
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4983
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr434Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

10-128153510-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153510
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153507
    reference: chr 10
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1145_1147delGAG
  hgvsp: ENSP00000349318.3:p.Gly382del
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1286_1288delGAG
  hgvsp: ENSP00000405995.1:p.Gly429del
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1577_1579delGAG
  hgvsp: ENSP00000444369.1:p.Gly526del
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1286_1288delGAG
  hgvsp: ENSP00000284694.7:p.Gly429del
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3359_163-3357delGAG
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3359_1244-3357delGAG
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7961
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23662
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly429del
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: TCTC
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

10-128153568-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153568
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153568
    reference: chr 10
allele count: 4
allele frequency: 3.364058400053825e-5
allele num: 118904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-13G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3414G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-13G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-13G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-13G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3414G>A
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16570
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7868
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7641
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

10-128153569-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153569
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153569
    reference: chr 10
allele count: 1
allele frequency: 8.414958430105355e-6
allele num: 118836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-14C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3415C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-14C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-14C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-14C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3415C>T
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13221
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3159
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7632
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2964
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4935
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2857
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS

10-128153569-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153569
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153569
    reference: chr 10
allele count: 1
allele frequency: 8.414958430105355e-6
allele num: 118836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3415C>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-14C>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-14C>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3415C>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-14C>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-14C>A
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2857
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7632
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3159
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19519
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

10-128153576-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153576
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153576
    reference: chr 10
allele count: 4
allele frequency: 3.379805661174482e-5
allele num: 118350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3422C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-21C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-21C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-21C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3422C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-21C>T
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18456
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7534
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3322
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11665
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

10-128153581-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153581
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153581
    reference: chr 10
allele count: 8
allele frequency: 6.790940884859597e-5
allele num: 117804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3427G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-26G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-26G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-26G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3427G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-26G>A
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7788
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3567
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3082
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4189
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-128153585-ATC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153585
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153583
    reference: chr 10
allele count: 4
allele frequency: 3.405008767897578e-5
allele num: 117474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3433_1244-3432delGA
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-32_1535-31delGA
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-32_1244-31delGA
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-32_1103-31delGA
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-32_1244-31delGA
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3433_163-3432delGA
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12466
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4183
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4849
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: ATC
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

10-128153587-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153587
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153587
    reference: chr 10
allele count: 7
allele frequency: 5.969232868301668e-5
allele num: 117268
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-32G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-32G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-32G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3433G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3433G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-32G>C
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12393
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14705
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4836
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2952
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3607
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16191
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11651
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/10-128153592-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153592
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153592
    reference: chr 10
allele count: 1
allele frequency: 8.567365192508696e-6
allele num: 116722
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3438T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-37T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3438T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-37T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-37T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-37T>G
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13559
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4161
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11636
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4808
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6854
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

10-128153601-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153601
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153601
    reference: chr 10
allele count: 1
allele frequency: 8.646928610957387e-6
allele num: 115648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-46T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-46T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-46T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3447T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-46T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3447T>C
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4669
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/10-128153603-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128153603
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128153603
    reference: chr 10
allele count: 1
allele frequency: 8.681761355743853e-6
allele num: 115184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-3449G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-48G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-48G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-3449G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-48G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-48G>T
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10442
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5711
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10475
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4624
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

10-128158351-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158351
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158351
    reference: chr 10
allele count: 1
allele frequency: 2.564102564102564e-4
allele num: 3900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4796T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4796T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4796T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8197T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4796T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8197T>C
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3322
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

10-128158356-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158356
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158356
    reference: chr 10
allele count: 1
allele frequency: 2.312673450508788e-4
allele num: 4324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4801T>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4801T>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8202T>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8202T>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4801T>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4801T>A
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ

10-128158358-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158358
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158358
    reference: chr 10
allele count: 1
allele frequency: 2.272727272727273e-4
allele num: 4400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4803G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4803G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4803G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8204G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4803G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8204G>C
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3442
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 538
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genotype quality: GenotypeQuality
  all individuals: 15
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

10-128158374-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158374
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158374
    reference: chr 10
allele count: 1
allele frequency: 1.577287066246057e-4
allele num: 6340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4819A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4819A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8220A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8220A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4819A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4819A>C
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
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genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

10-128158396-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158396
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158396
    reference: chr 10
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4841C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8242C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4841C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4841C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8242C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4841C>T
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3610
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

10-128158410-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158410
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158410
    reference: chr 10
allele count: 154
allele frequency: 1.369375778054419e-2
allele num: 11246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4855G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8256G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4855G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8256G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4855G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4855G>A
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 2.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 2.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

10-128158425-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158425
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158425
    reference: chr 10
allele count: 1
allele frequency: 8.366800535475234e-5
allele num: 11952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4870G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4870G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8271G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4870G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4870G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8271G>A
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4877
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

10-128158440-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158440
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158440
    reference: chr 10
allele count: 1
allele frequency: 8.192692118630181e-5
allele num: 12206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4885A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8286A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4885A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4885A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8286A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4885A>C
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

10-128158470-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158470
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158470
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 12298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4915G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4915G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4915G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8316G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8316G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4915G>A
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

10-128158475-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158475
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158475
    reference: chr 10
allele count: 14
allele frequency: 1.138026337180946e-3
allele num: 12302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4920C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8321C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8321C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4920C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4920C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4920C>T
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 5268
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/10-128158481-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158481
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158481
    reference: chr 10
allele count: 2
allele frequency: 1.624431448992852e-4
allele num: 12312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8327G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4926G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4926G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4926G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4926G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8327G>T
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
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genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
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genotype depth: GenotypeDepth
  all individuals: 8
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genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 31
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genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

10-128158486-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158486
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158486
    reference: chr 10
allele count: 1
allele frequency: 8.122157244964262e-5
allele num: 12312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4931C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4931C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8332C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8332C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4931C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4931C>T
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3678
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
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genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 370
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genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

10-128158502-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158502
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158502
    reference: chr 10
allele count: 24
allele frequency: 1.947419668938656e-3
allele num: 12324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8348C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8348C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4947C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4947C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4947C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4947C>T
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.75e1
  variant carriers: 24
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

10-128158538-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158538
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158538
    reference: chr 10
allele count: 2
allele frequency: 1.624431448992852e-4
allele num: 12312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4983G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8384G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4983G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4983G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4983G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8384G>A
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

10-128158539-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158539
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158539
    reference: chr 10
allele count: 1
allele frequency: 8.122157244964262e-5
allele num: 12312
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4984C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8385C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4984C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4984C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8385C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4984C>T
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-128158544-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158544
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158544
    reference: chr 10
allele count: 1
allele frequency: 8.128759551292472e-5
allele num: 12302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-4989G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-4989G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-4989G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8390G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-4989G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8390G>T
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5188
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

10-128158587-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158587
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158587
    reference: chr 10
allele count: 2
allele frequency: 1.64446637066272e-4
allele num: 12162
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8433T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-5032T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8433T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-5032T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-5032T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-5032T>C
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4975
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

10-128158610-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158610
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158610
    reference: chr 10
allele count: 1
allele frequency: 8.541168431841476e-5
allele num: 11708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-5055T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8456T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8456T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-5055T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-5055T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-5055T>C
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

10-128158618-GAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158618
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158615
    reference: chr 10
allele count: 4
allele frequency: 3.574620196604111e-4
allele num: 11190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-5066_1244-5064delTCT
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8467_1244-8465delTCT
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-5066_1103-5064delTCT
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-5066_1244-5064delTCT
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-5066_1535-5064delTCT
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8467_163-8465delTCT
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2817
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: GAGA
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

10-128158634-GTTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158634
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158631
    reference: chr 10
allele count: 2
allele frequency: 1.969667126255663e-4
allele num: 10154
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-5082_1244-5080delGAA
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-5082_1535-5080delGAA
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8483_1244-8481delGAA
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-5082_1103-5080delGAA
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8483_163-8481delGAA
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-5082_1244-5080delGAA
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2878
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: GTTC
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

10-128158635-TTCTTCTGCATGTTGCATACTGCAGGGGGGAAGGCAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158635
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158599
    reference: chr 10
allele count: 1
allele frequency: 1.001001001001001e-4
allele num: 9990
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: TTCTTCTGCATGTTGCATACTGCAGGGGGGAAGGCAC
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-128158652-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158652
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158652
    reference: chr 10
allele count: 1
allele frequency: 1.217433649866082e-4
allele num: 8214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8498A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-5097A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-5097A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-5097A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-5097A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8498A>G
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-128158712-CTTCTGTAGGTTGCATGCTGCAGAGGGAGAGAAGGCATTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158712
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158673
    reference: chr 10
allele count: 1
allele frequency: 3.573981415296641e-4
allele num: 2798
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5381
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: CTTCTGTAGGTTGCATGCTGCAGAGGGAGAGAAGGCATTT
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-128158746-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158746
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158746
    reference: chr 10
allele count: 31
allele frequency: 1.829988193624557e-2
allele num: 1694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-5191C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8592C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-5191C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8592C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-5191C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-5191C>G
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6165
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP

10-128158772-AGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128158772
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128158769
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 1620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.163-8621_163-8619delCTC
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1244-5220_1244-5218delCTC
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1244-5220_1244-5218delCTC
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1244-8621_1244-8619delCTC
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1103-5220_1103-5218delCTC
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1535-5220_1535-5218delCTC
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5836
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: AGAG
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

10-128191309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191309
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191309
    reference: chr 10
allele count: 25
allele frequency: 2.20887082523414e-4
allele num: 113180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1955G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1217G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1217G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1217G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1217G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1217G>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1217G>A
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-128191310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191310
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191310
    reference: chr 10
allele count: 6
allele frequency: 5.291565244999471e-5
allele num: 113388
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1216C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1216C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1216C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1954C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1216C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1216C>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1216C>T
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

10-128191310-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191310
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191310
    reference: chr 10
allele count: 1
allele frequency: 8.819275408332451e-6
allele num: 113388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1216C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1954C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1216C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1216C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1216C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1216C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1216C>G
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41601
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/10-128191312-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191312
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191312
    reference: chr 10
allele count: 1
allele frequency: 8.816165320732095e-6
allele num: 113428
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1214T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1214T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1214T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1214T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1952T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1214T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1214T>G
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

10-128191314-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191314
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191314
    reference: chr 10
allele count: 1
allele frequency: 8.815543566416305e-6
allele num: 113436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1212A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1212A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1212A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1212A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1950A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1212A>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1212A>C
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41603
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

10-128191319-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191319
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191319
    reference: chr 10
allele count: 2
allele frequency: 1.762052438680575e-5
allele num: 113504
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1207T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1207T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1945T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1207T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1207T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1207T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1207T>C
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41604
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ

10-128191322-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191322
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191322
    reference: chr 10
allele count: 1
allele frequency: 8.805762490974094e-6
allele num: 113562
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1204A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1204A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1204A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1204A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1204A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1204A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1942A>G
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/10-128191325-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191325
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191325
    reference: chr 10
allele count: 2
allele frequency: 1.760408414752223e-5
allele num: 113610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1201T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1201T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1201T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1201T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1939T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1201T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1201T>G
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41607
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4559
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/10-128191327-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191327
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191327
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 113566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1199G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1199G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1937G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1199G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1199G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1199G>T
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1199G>T
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-128191332-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191332
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191332
    reference: chr 10
allele count: 1
allele frequency: 8.789354334030623e-6
allele num: 113774
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1194A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1194A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1194A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1194A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1932A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1194A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1194A>G
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS

10-128191335-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191335
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191335
    reference: chr 10
allele count: 3
allele frequency: 2.63481468470051e-5
allele num: 113860
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1191A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1191A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1191A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1191A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1191A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1929A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1191A>G
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

10-128191338-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191338
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191338
    reference: chr 10
allele count: 1
allele frequency: 8.773622979873309e-6
allele num: 113978
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1188T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1188T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1188T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1926T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1188T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1188T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1188T>C
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

10-128191342-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191342
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191342
    reference: chr 10
allele count: 129
allele frequency: 1.129715907100571e-3
allele num: 114188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1184G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1184G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1922G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1184G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1184G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1184G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1184G>C
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 9.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 8.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41636
  bin: 9.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

10-128191344-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191344
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191344
    reference: chr 10
allele count: 4
allele frequency: 3.499685028347449e-5
allele num: 114296
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1182T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1182T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1182T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1920T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1182T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1182T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1182T>C
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5940
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41606
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/10-128191346-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191346
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191346
    reference: chr 10
allele count: 1
allele frequency: 8.741870060843416e-6
allele num: 114392
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1180T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1918T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1180T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1180T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1180T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1180T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1180T>G
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

10-128191348-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191348
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191348
    reference: chr 10
allele count: 1
allele frequency: 8.73591333973967e-6
allele num: 114470
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1178A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1178A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1178A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1178A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1916A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1178A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1178A>G
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1977
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

10-128191368-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191368
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191368
    reference: chr 10
allele count: 25478
allele frequency: 2.217329248764186e-1
allele num: 114904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1896A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1158A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000376459
  ensembl transcript: ENST00000392694
  gene symbol: C10orf90
  hgvsc: ENST00000392694.1:c.1138A>G
  hgvsp: ENSP00000376459.1:p.Met380Val
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1158A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1158A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1158A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1158A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1158A>G
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 2.75e1
  variant carriers: 334
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 3.25e1
  variant carriers: 449
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 6.75e1
  variant carriers: 554
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 4.75e1
  variant carriers: 530
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 2.25e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 6.25e1
  variant carriers: 497
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.75e1
  variant carriers: 707
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 3.75e1
  variant carriers: 545
genotype depth: GenotypeDepth
  all individuals: 15737
  bin: 9.75e1
  variant carriers: 13738
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 4.25e1
  variant carriers: 557
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 5.25e1
  variant carriers: 473
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 5.75e1
  variant carriers: 502
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 9.25e1
  variant carriers: 951
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 7.25e1
  variant carriers: 630
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 8.75e1
  variant carriers: 813
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 8.25e1
  variant carriers: 752
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 6.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 8.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 7.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 7.5e0
  variant carriers: 12
hgvs: p.Met380Val
num of homozygotes: 3135
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/10-128191371-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191371
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191371
    reference: chr 10
allele count: 4
allele frequency: 3.482136639041716e-5
allele num: 114872
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000376459
  ensembl transcript: ENST00000392694
  gene symbol: C10orf90
  hgvsc: ENST00000392694.1:c.1135T>G
  hgvsp: ENSP00000376459.1:p.Ser379Ala
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1893T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1155T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1155T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1155T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1155T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1155T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1155T>G
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser379Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

10-128191387-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191387
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191387
    reference: chr 10
allele count: 1
allele frequency: 8.707009142359599e-6
allele num: 114850
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1877A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1139A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1139A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000376459
  ensembl transcript: ENST00000392694
  gene symbol: C10orf90
  hgvsc: ENST00000392694.1:c.1119A>G
  hgvsp: ENST00000392694.1:c.1119A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1139A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1139A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1139A>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1139A>G
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2487
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39153
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6945
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly373Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

10-128191395-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191395
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191395
    reference: chr 10
allele count: 1
allele frequency: 8.709435802748698e-6
allele num: 114818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1131C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1131C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1131C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000376459
  ensembl transcript: ENST00000392694
  gene symbol: C10orf90
  hgvsc: ENST00000392694.1:c.1111C>G
  hgvsp: ENSP00000376459.1:p.Gln371Glu
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1131C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1869C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1131C>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1131C>G
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2351
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6918
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln371Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

10-128191404-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191404
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191404
    reference: chr 10
allele count: 1
allele frequency: 8.711408460519897e-6
allele num: 114792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1861-1G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1122G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1122G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000376459
  ensembl transcript: ENST00000392694
  gene symbol: C10orf90
  hgvsc: ENST00000392694.1:c.1103-1G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1122G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1122G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1122G>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1122G>C
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39148
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
hgvs: n.1861-1G>C
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

10-128191411-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191411
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191411
    reference: chr 10
allele count: 2
allele frequency: 1.743132059684842e-5
allele num: 114736
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1861-8T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1115T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000376459
  ensembl transcript: ENST00000392694
  gene symbol: C10orf90
  hgvsc: ENST00000392694.1:c.1103-8T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1115T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1115T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1115T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1115T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1115T>C
  variant of: http://identifiers.org/hgnc/26563
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6654
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39148
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
hgvs: n.1861-8T>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/10-128191413-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191413
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191413
    reference: chr 10
allele count: 1
allele frequency: 8.719916288803627e-6
allele num: 114680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1861-10T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1113T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1113T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000376459
  ensembl transcript: ENST00000392694
  gene symbol: C10orf90
  hgvsc: ENST00000392694.1:c.1103-10T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1113T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1113T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1113T>G
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1113T>G
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

10-128191413-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191413
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191413
    reference: chr 10
allele count: 3
allele frequency: 2.615974886641088e-5
allele num: 114680
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1113T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1113T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1113T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000376459
  ensembl transcript: ENST00000392694
  gene symbol: C10orf90
  hgvsc: ENST00000392694.1:c.1103-10T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1113T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1113T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1861-10T>C
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1113T>C
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39146
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

10-128191425-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 128191425
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 128191425
    reference: chr 10
allele count: 72
allele frequency: 6.281955084021149e-4
allele num: 114614
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000376459
  ensembl transcript: ENST00000392694
  gene symbol: C10orf90
  hgvsc: ENST00000392694.1:c.1103-22C>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000398786
  ensembl transcript: ENST00000454341
  gene symbol: C10orf90
  hgvsc: ENST00000454341.1:c.1243+1101C>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000411609
  ensembl transcript: ENST00000424927
  gene symbol: C10orf90
  hgvsc: ENST00000424927.1:c.162+1101C>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl transcript: ENST00000368674
  gene symbol: C10orf90
  hgvsc: ENST00000368674.1:n.1861-22C>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000405995
  ensembl transcript: ENST00000432642
  gene symbol: C10orf90
  hgvsc: ENST00000432642.1:c.1243+1101C>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000349318
  ensembl transcript: ENST00000356858
  gene symbol: C10orf90
  hgvsc: ENST00000356858.3:c.1102+1101C>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000284694
  ensembl transcript: ENST00000284694
  gene symbol: C10orf90
  hgvsc: ENST00000284694.7:c.1243+1101C>A
  variant of: http://identifiers.org/hgnc/26563
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000154493
  ensembl protein: ENSP00000444369
  ensembl transcript: ENST00000544758
  gene symbol: C10orf90
  hgvsc: ENST00000544758.1:c.1534+1101C>A
  variant of: http://identifiers.org/hgnc/26563
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5798
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4985
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23552
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3016e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.088e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

QD
type: SiteQuality
SIO_000300: 1.413e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.372e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 2.076579e6

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7948
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4984
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.16e-1

DP
type: SiteQuality
SIO_000300: 2.076711e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.17e-1

QD
type: SiteQuality
SIO_000300: 1.339e1

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4987
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11764
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2970
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4262
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 8
allele frequency: 7.690828686791001e-4
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.311604253351826e-4
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.382e0

FS
type: SiteQuality
SIO_000300: 1.101e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.076608e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.316e1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23603
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3220
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2970
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11753
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 2.879e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.077e0

VQSLOD
type: SiteQuality
SIO_000300: 5.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 2.076072e6

QD
type: SiteQuality
SIO_000300: 1.282e1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.883e1

VQSLOD
type: SiteQuality
SIO_000300: -2.389e0

DP
type: SiteQuality
SIO_000300: 2.07604e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.761e0

FS
type: SiteQuality
SIO_000300: 8.497e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 97

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 96
allele frequency: 5.813953488372093e-3
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

MQ
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.079559e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

FS
type: SiteQuality
SIO_000300: 5.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -4.352e0

VQSLOD
type: SiteQuality
SIO_000300: 9.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.469010175763182e-4
allele num: 8648
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.367e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 2.074242e6

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 7.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.69e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.524e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.05e-1

FS
type: SiteQuality
SIO_000300: 1.6151e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.017e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.318e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
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num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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BaseQRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
type: Population
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
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VQSLOD
type: SiteQuality
SIO_000300: 5.06e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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DP
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ClippingRankSum
type: SiteQuality
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QD
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.731e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele num: 8602
num of homozygotes: 0

Latino
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allele num: 11556
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.029385034837928e-5
allele num: 66020
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.703085581214826e-5
allele num: 10306
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.019687e6

ReadPosRankSum
type: SiteQuality
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VQSLOD
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FS
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ClippingRankSum
type: SiteQuality
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MQRankSum
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
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South Asian
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allele frequency: 6.718624025799516e-5
allele num: 14884
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65998
num of homozygotes: 0

Other
type: Population
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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FS
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1905
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variant carriers: 0

East Asian
type: Population
allele count: 0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.515197430225158e-5
allele num: 65998
num of homozygotes: 0

Other
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Latino
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BaseQRankSum
type: SiteQuality
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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SIO_000300: 7.91e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 2.745744096650192e-4
allele num: 14568
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BaseQRankSum
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MQRankSum
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FS
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MQ
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DP
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
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allele frequency: 5.625879043600563e-4
allele num: 14220
num of homozygotes: 0

MQ
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InbreedingCoeff
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QD
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FS
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 6.089206880803775e-5
allele num: 65690
num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65646
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East Asian
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allele frequency: 0.0e0
allele num: 8572
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European (Finnish)
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allele count: 7
allele frequency: 1.059963658388855e-3
allele num: 6604
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
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DP
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FS
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.683570684265369e-5
allele num: 11516
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65532
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FS
type: SiteQuality
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QD
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.53261402648357e-5
allele num: 65248
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European (Finnish)
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Latino
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African
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East Asian
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South Asian
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DP
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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South Asian
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Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65110
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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European (Finnish)
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South Asian
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African
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East Asian
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European (Non-Finnish)
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MQRankSum
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BaseQRankSum
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QD
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DP
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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Other
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South Asian
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African
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European (Finnish)
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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FS
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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African
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Latino
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European (Finnish)
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QD
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BaseQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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VQSLOD
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: NaN
allele num: 0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 3584
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQ
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FS
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele num: 0
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African
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allele frequency: 0.0e0
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South Asian
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allele num: 6014
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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VQSLOD
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QD
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DP
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 152

GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 1.123595505617977e-2
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East Asian
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allele frequency: 3.061224489795918e-2
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 2.085714285714286e-2
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 5.050505050505051e-3
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3448
num of homozygotes: 0

South Asian
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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InbreedingCoeff
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DP
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MQ
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3544
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 538
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South Asian
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allele frequency: 1.314060446780552e-4
allele num: 7610
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QD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3604
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 200
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Latino
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allele frequency: 0.0e0
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African
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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BaseQRankSum
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MQ
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SIO_000300: 5.344e1

MQRankSum
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SIO_000300: 4.21e-1

ClippingRankSum
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DP
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QD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 8.310249307479224e-4
allele num: 3610
num of homozygotes: 0

East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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allele frequency: 1.992753623188406e-2
allele num: 552
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South Asian
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Other
type: Population
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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Other
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African
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East Asian
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QD
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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African
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Other
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East Asian
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European (Finnish)
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DP
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
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VQSLOD
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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African
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East Asian
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South Asian
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VQSLOD
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MQRankSum
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DP
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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European (Finnish)
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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ClippingRankSum
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DP
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SIO_000300: 1.54842e5

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.779321845469705e-4
allele num: 3598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.259e1

MQ
type: SiteQuality
SIO_000300: 5.927e1

VQSLOD
type: SiteQuality
SIO_000300: -2.188e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.29e-2

FS
type: SiteQuality
SIO_000300: 1.7374e1

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

DP
type: SiteQuality
SIO_000300: 1.54571e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

GenotypeQuality
all individuals: 20
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.736111111111111e-3
allele num: 576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.54399e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.33e-2

QD
type: SiteQuality
SIO_000300: 1.293e1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: -1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

FS
type: SiteQuality
SIO_000300: 8.443e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3043
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.651816494298595e-4
allele num: 7542
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.25e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.52008e5

MQRankSum
type: SiteQuality
SIO_000300: 6.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.56e0

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

QD
type: SiteQuality
SIO_000300: 1.147e1

GenotypeQuality
all individuals: 79
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4457
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.385041551246538e-4
allele num: 7220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.966e-1

DP
type: SiteQuality
SIO_000300: 1.44588e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 2.334e0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.12e-2

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.417e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

QD
type: SiteQuality
SIO_000300: 1.256e1

GenotypeQuality
all individuals: 1156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.230769230769231e-3
allele num: 3250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

MQ
type: SiteQuality
SIO_000300: 5.784e1

FS
type: SiteQuality
SIO_000300: 1.076e0

DP
type: SiteQuality
SIO_000300: 1.36351e5

QD
type: SiteQuality
SIO_000300: 1.491e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.01e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.56e-1

GenotypeQuality
all individuals: 2049
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2931
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2976
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.558718861209964e-3
allele num: 562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.9e1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

FS
type: SiteQuality
SIO_000300: 2.557e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.09e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.21936e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.739e1

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2654
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.403675970047651e-4
allele num: 2938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.521e1

DP
type: SiteQuality
SIO_000300: 1.1935e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.335e0

VQSLOD
type: SiteQuality
SIO_000300: 5.610000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.13e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.71e-1

GenotypeQuality
all individuals: 373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.117746717492588e-4
allele num: 4722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.41e-2

DP
type: SiteQuality
SIO_000300: 9.7329e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.126e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

VQSLOD
type: SiteQuality
SIO_000300: -2.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.281e0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.304147465437788e-3
allele num: 434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.08e0

MQ
type: SiteQuality
SIO_000300: 5.368e1

FS
type: SiteQuality
SIO_000300: 6.04e0

QD
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-1

DP
type: SiteQuality
SIO_000300: 5.9718e4

MQRankSum
type: SiteQuality
SIO_000300: -3.245e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 190
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 55
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 1
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variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 346
bin: 1.25e1
variant carriers: 3

African
type: Population
allele count: 29
allele frequency: 7.28643216080402e-2
allele num: 398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.020408163265306e-2
allele num: 98
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.052631578947368e-3
allele num: 950
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.56e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

QD
type: SiteQuality
SIO_000300: 1.244e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.13e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.59e4

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 920
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 4.3699e4

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 6.213e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.96e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 2.207e1

GenotypeQuality
all individuals: 415
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2615
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41600
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 424
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.735150244584206e-5
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.015646542050081e-5
allele num: 62378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.02571860816944e-4
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.357378595002357e-4
allele num: 8484
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 6.028938906752412e-4
allele num: 14928
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.072135785007072e-4
allele num: 8484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

QD
type: SiteQuality
SIO_000300: 1.44e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.496e0

VQSLOD
type: SiteQuality
SIO_000300: 3.99e0

DP
type: SiteQuality
SIO_000300: 3.069188e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e-1

GenotypeQuality
all individuals: 1599
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41601
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 595
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2878
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.178411501296253e-4
allele num: 8486
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.179245283018868e-4
allele num: 8480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62446
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.494060097833683e-4
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

DP
type: SiteQuality
SIO_000300: 3.070894e6

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.96e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 1.403e1

GenotypeQuality
all individuals: 373
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2878
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1599
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.735150244584206e-5
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15070
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

QD
type: SiteQuality
SIO_000300: 1.403e1

VQSLOD
type: SiteQuality
SIO_000300: 5.96e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.070894e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

GenotypeQuality
all individuals: 1618
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41603
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.601332308480656e-5
allele num: 62448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.69e-1

DP
type: SiteQuality
SIO_000300: 3.072494e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.99e0

FS
type: SiteQuality
SIO_000300: 2.614e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.59e-1

QD
type: SiteQuality
SIO_000300: 1.389e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.59e-1

GenotypeQuality
all individuals: 820
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3180
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.178411501296253e-4
allele num: 8486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

DP
type: SiteQuality
SIO_000300: 3.073769e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.09e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

QD
type: SiteQuality
SIO_000300: 1.676e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

GenotypeQuality
all individuals: 1481
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.202049311559398e-5
allele num: 62460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 3.07887e6

VQSLOD
type: SiteQuality
SIO_000300: 5.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

FS
type: SiteQuality
SIO_000300: 4.258e0

QD
type: SiteQuality
SIO_000300: 1.642e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
all individuals: 504
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41606
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 616
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.600665877004834e-5
allele num: 62474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 3.082328e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.416e0

VQSLOD
type: SiteQuality
SIO_000300: -4.642e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.738e0

QD
type: SiteQuality
SIO_000300: 1.736e1

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.313542624458164e-4
allele num: 15226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.104e0

MQRankSum
type: SiteQuality
SIO_000300: 2.85e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
SIO_000300: 1.491e1

DP
type: SiteQuality
SIO_000300: 3.085596e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.267e0

GenotypeQuality
all individuals: 763
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4664
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41607
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.088331e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 6.158e0

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

QD
type: SiteQuality
SIO_000300: 5.38e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.021e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.02e-1

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41610
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.178411501296253e-4
allele num: 8486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.44e-1

DP
type: SiteQuality
SIO_000300: 3.093404e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

QD
type: SiteQuality
SIO_000300: 1.034e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 1.825e0

GenotypeQuality
all individuals: 263
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41612
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.79570305006714e-5
allele num: 62556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.532e1

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 3.096116e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

GenotypeQuality
all individuals: 41612
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 148
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5547
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.597852486258469e-5
allele num: 62584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.65e-1

QD
type: SiteQuality
SIO_000300: 1.524e1

DP
type: SiteQuality
SIO_000300: 3.098946e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
all individuals: 1846
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5788
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 115
allele frequency: 1.836298023185258e-3
allele num: 62626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.365287235900122e-4
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.711425206124853e-4
allele num: 8490
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.276976120546546e-4
allele num: 15662
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.165501165501166e-3
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.02571860816944e-4
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.421e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 1.199e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 3.109396e6

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.27e0

GenotypeQuality
all individuals: 410
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.788354721317755e-5
allele num: 62652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e0

DP
type: SiteQuality
SIO_000300: 3.106641e6

FS
type: SiteQuality
SIO_000300: 2.005e0

QD
type: SiteQuality
SIO_000300: 1.286e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.52e-1

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41607
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1976
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.324310650139134e-5
allele num: 15812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62678
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.91e-1

QD
type: SiteQuality
SIO_000300: 1.09e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

DP
type: SiteQuality
SIO_000300: 3.10808e6

MQRankSum
type: SiteQuality
SIO_000300: 9.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.52e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6068
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41607
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.594896331738437e-5
allele num: 62700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

QD
type: SiteQuality
SIO_000300: 1.147e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

DP
type: SiteQuality
SIO_000300: 3.109295e6

FS
type: SiteQuality
SIO_000300: 4.399e0

MQRankSum
type: SiteQuality
SIO_000300: 5.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e0

GenotypeQuality
all individuals: 46687
bin: 9.75e1
variant carriers: 22088

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 83
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 13

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 13

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 4079
bin: 6.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1460
bin: 9.25e1
variant carriers: 45

GenotypeQuality
all individuals: 1261
bin: 8.25e1
variant carriers: 37

GenotypeQuality
all individuals: 1084
bin: 7.75e1
variant carriers: 30

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 12

African
type: Population
allele count: 3106
allele frequency: 3.655838041431262e-1
allele num: 8496
num of homozygotes: 550

Other
type: Population
allele count: 212
allele frequency: 2.459396751740139e-1
allele num: 862
num of homozygotes: 31

European (Non-Finnish)
type: Population
allele count: 14478
allele frequency: 2.304826795720835e-1
allele num: 62816
num of homozygotes: 1690

European (Finnish)
type: Population
allele count: 1452
allele frequency: 2.196671709531014e-1
allele num: 6610
num of homozygotes: 151

East Asian
type: Population
allele count: 796
allele frequency: 9.37794533459001e-2
allele num: 8488
num of homozygotes: 43

Latino
type: Population
allele count: 1304
allele frequency: 1.138268156424581e-1
allele num: 11456
num of homozygotes: 91

South Asian
type: Population
allele count: 4130
allele frequency: 2.553165182987142e-1
allele num: 16176
num of homozygotes: 579

VQSLOD
type: SiteQuality
SIO_000300: 6.98e0

QD
type: SiteQuality
SIO_000300: 1.625e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.45e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

DP
type: SiteQuality
SIO_000300: 4.4111e6

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6928
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39157
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.478314745972739e-4
allele num: 16140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.95e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

DP
type: SiteQuality
SIO_000300: 3.130589e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

FS
type: SiteQuality
SIO_000300: 1.747e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.59230597751664e-5
allele num: 62802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-3

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: -2.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.25e0

DP
type: SiteQuality
SIO_000300: 3.129784e6

VQSLOD
type: SiteQuality
SIO_000300: 9.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.163e1

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39149
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2476
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.592559561727609e-5
allele num: 62792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.128956e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

QD
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.316e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

GenotypeQuality
all individuals: 1850
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2456
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.211951795254069e-5
allele num: 16098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.263e-1

QD
type: SiteQuality
SIO_000300: 1.866e1

MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.267e0

FS
type: SiteQuality
SIO_000300: 4.868e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 3.127521e6

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2347
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.224324660774306e-5
allele num: 16066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.593371574251115e-5
allele num: 62760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 1.142e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.78e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

DP
type: SiteQuality
SIO_000300: 3.1247e6

GenotypeQuality
all individuals: 2347
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39146
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1096
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1840
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6332
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5939303133667e-5
allele num: 62738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.12156e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.397e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.92e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 4.867e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2347
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6332
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1840
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.781790940100099e-5
allele num: 62738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16032
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.92e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

QD
type: SiteQuality
SIO_000300: 1.397e1

FS
type: SiteQuality
SIO_000300: 4.867e0

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

DP
type: SiteQuality
SIO_000300: 3.12156e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e0

GenotypeQuality
all individuals: 353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39153
bin: 9.75e1
variant carriers: 72

GenotypeQuality
all individuals: 2288
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5907
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 5
allele frequency: 5.813953488372093e-3
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.564296520423601e-4
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.499062851430714e-4
allele num: 16006
num of homozygotes: 0

East Asian
type: Population
allele count: 31
allele frequency: 3.652214891611687e-3
allele num: 8488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 4.305808056645297e-4
allele num: 62706
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e-1

DP
type: SiteQuality
SIO_000300: 3.11555e6

QD
type: SiteQuality
SIO_000300: 1.223e1

FS
type: SiteQuality
SIO_000300: 1.737e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e0

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0