15-90768543-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768543
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768543
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 22506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.456G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1636G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1420G>A
  hgvsp: ENSP00000368417.3:p.Val474Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1435G>A
  hgvsp: ENSP00000332204.6:p.Val479Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1271G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.590G>A
  hgvsp: ENSP00000453804.1:p.Val198Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1435G>A
  hgvsp: ENSP00000394720.2:p.Val479Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.137G>A
  hgvsp: ENSP00000453866.1:p.Val47Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.207G>A
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19173
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27601
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val479Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-90768544-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768544
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768544
    reference: chr 15
allele count: 54
allele frequency: 2.388746350526409e-3
allele num: 22606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.591T>A
  hgvsp: ENSP00000453804.1:p.Val198Glu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1421T>A
  hgvsp: ENSP00000368417.3:p.Val474Glu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.457T>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1436T>A
  hgvsp: ENSP00000394720.2:p.Val479Glu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1436T>A
  hgvsp: ENSP00000332204.6:p.Val479Glu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.138T>A
  hgvsp: ENSP00000453866.1:p.Val47Glu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1637T>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.208T>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1272T>A
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19265
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27500
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Val479Glu
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

15-90768547-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768547
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768547
    reference: chr 15
allele count: 17
allele frequency: 7.544825137582106e-4
allele num: 22532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.594G>A
  hgvsp: ENSP00000453804.1:p.Gly199Asp
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.211G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1424G>A
  hgvsp: ENSP00000368417.3:p.Gly475Asp
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.141G>A
  hgvsp: ENSP00000453866.1:p.Gly48Asp
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1275G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1439G>A
  hgvsp: ENSP00000332204.6:p.Gly480Asp
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1439G>A
  hgvsp: ENSP00000394720.2:p.Gly480Asp
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.460G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1640G>A
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18853
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27697
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3002
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 6.75e1
  variant carriers: 2
hgvs: p.Gly480Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-90768552-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768552
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768552
    reference: chr 15
allele count: 2
allele frequency: 8.816009873931059e-5
allele num: 22686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.465C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.146C>T
  hgvsp: ENSP00000453866.1:p.Arg50Trp
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1444C>T
  hgvsp: ENSP00000332204.6:p.Arg482Trp
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1280C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.216C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1444C>T
  hgvsp: ENSP00000394720.2:p.Arg482Trp
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1429C>T
  hgvsp: ENSP00000368417.3:p.Arg477Trp
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1645C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.599C>T
  hgvsp: ENSP00000453804.1:p.Arg201Trp
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27630
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6212
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15471
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Arg482Trp
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-90768553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768553
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768553
    reference: chr 15
allele count: 10
allele frequency: 4.40257110152329e-4
allele num: 22714
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1445G>A
  hgvsp: ENSP00000394720.2:p.Arg482Gln
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1646G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.466G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1430G>A
  hgvsp: ENSP00000368417.3:p.Arg477Gln
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.147G>A
  hgvsp: ENSP00000453866.1:p.Arg50Gln
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.217G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.600G>A
  hgvsp: ENSP00000453804.1:p.Arg201Gln
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1281G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1445G>A
  hgvsp: ENSP00000332204.6:p.Arg482Gln
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18854
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27686
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1311
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg482Gln
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS

15-90768557-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768557
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768557
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 22784
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.604G>A
  hgvsp: ENST00000559074.1:c.604G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.470G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1449G>A
  hgvsp: ENST00000332496.6:c.1449G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1449G>A
  hgvsp: ENST00000411539.2:c.1449G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1285G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1650G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.151G>A
  hgvsp: ENST00000559983.1:c.151G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.221G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.2G>A
  hgvsp: ENST00000559247.1:c.2G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1434G>A
  hgvsp: ENST00000379122.3:c.1434G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28004
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26900
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val483Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

15-90768565-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768565
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768565
    reference: chr 15
allele count: 2
allele frequency: 8.750437521876094e-5
allele num: 22856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1457T>C
  hgvsp: ENSP00000332204.6:p.Ile486Thr
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1293T>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.229T>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1442T>C
  hgvsp: ENSP00000368417.3:p.Ile481Thr
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.10T>C
  hgvsp: ENSP00000454068.1:p.Ile4Thr
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1457T>C
  hgvsp: ENSP00000394720.2:p.Ile486Thr
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.478T>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.159T>C
  hgvsp: ENSP00000453866.1:p.Ile54Thr
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.612T>C
  hgvsp: ENSP00000453804.1:p.Ile205Thr
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1658T>C
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17701
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Ile486Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

15-90768570-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768570
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768570
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 22856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.234G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1447G>C
  hgvsp: ENSP00000368417.3:p.Glu483Gln
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.483G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1663G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.164G>C
  hgvsp: ENSP00000453866.1:p.Glu56Gln
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1298G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.15G>C
  hgvsp: ENSP00000454068.1:p.Glu6Gln
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1462G>C
  hgvsp: ENSP00000394720.2:p.Glu488Gln
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.617G>C
  hgvsp: ENSP00000453804.1:p.Glu207Gln
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1462G>C
  hgvsp: ENSP00000332204.6:p.Glu488Gln
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 17024
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28915
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu488Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

15-90768586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768586
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768586
    reference: chr 15
allele count: 3
allele frequency: 1.316251316251316e-4
allele num: 22792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.180C>T
  hgvsp: ENSP00000453866.1:p.Ser61Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.250C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.499C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1478C>T
  hgvsp: ENSP00000394720.2:p.Ser493Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.31C>T
  hgvsp: ENSP00000454068.1:p.Ser11Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1314C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1478C>T
  hgvsp: ENSP00000332204.6:p.Ser493Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1679C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.633C>T
  hgvsp: ENSP00000453804.1:p.Ser212Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1463C>T
  hgvsp: ENSP00000368417.3:p.Ser488Leu
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10653
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser493Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

15-90768589-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768589
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768589
    reference: chr 15
allele count: 1
allele frequency: 4.44286475919673e-5
allele num: 22508
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1317C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.636C>T
  hgvsp: ENSP00000453804.1:p.Ser213Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1481C>T
  hgvsp: ENSP00000394720.2:p.Ser494Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1481C>T
  hgvsp: ENSP00000332204.6:p.Ser494Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.34C>T
  hgvsp: ENSP00000454068.1:p.Ser12Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.183C>T
  hgvsp: ENSP00000453866.1:p.Ser62Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1682C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1466C>T
  hgvsp: ENSP00000368417.3:p.Ser489Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.502C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.253C>T
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11387
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser494Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-90768590-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768590
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768590
    reference: chr 15
allele count: 7
allele frequency: 3.099265031435403e-4
allele num: 22586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1467G>A
  hgvsp: ENST00000379122.3:c.1467G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.184G>A
  hgvsp: ENST00000559983.1:c.184G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1683G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.254G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.637G>A
  hgvsp: ENST00000559074.1:c.637G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.503G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1482G>A
  hgvsp: ENST00000411539.2:c.1482G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1482G>A
  hgvsp: ENST00000332496.6:c.1482G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1318G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.35G>A
  hgvsp: ENST00000559247.1:c.35G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32671
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser494Ser
num of homozygotes: 1
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

15-90768592-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768592
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768592
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 22508
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.639G>A
  hgvsp: ENSP00000453804.1:p.Gly214Glu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1484G>A
  hgvsp: ENSP00000332204.6:p.Gly495Glu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1685G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.505G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.37G>A
  hgvsp: ENSP00000454068.1:p.Gly13Glu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1484G>A
  hgvsp: ENSP00000394720.2:p.Gly495Glu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1469G>A
  hgvsp: ENSP00000368417.3:p.Gly490Glu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.186G>A
  hgvsp: ENSP00000453866.1:p.Gly63Glu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1320G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.256G>A
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10817
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32987
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly495Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

15-90768599-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768599
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768599
    reference: chr 15
allele count: 1
allele frequency: 4.492362982929021e-5
allele num: 22260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.512C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.263C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1476C>T
  hgvsp: ENST00000379122.3:c.1476C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.193C>T
  hgvsp: ENST00000559983.1:c.193C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1491C>T
  hgvsp: ENST00000332496.6:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1692C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1491C>T
  hgvsp: ENST00000411539.2:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1327C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.44C>T
  hgvsp: ENST00000559247.1:c.44C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.646C>T
  hgvsp: ENST00000559074.1:c.646C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33821
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7080
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32336
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro497Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

15-90768600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768600
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768600
    reference: chr 15
allele count: 2
allele frequency: 8.974243919949744e-5
allele num: 22286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.194G>A
  hgvsp: ENSP00000453866.1:p.Val66Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1477G>A
  hgvsp: ENSP00000368417.3:p.Val493Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.45G>A
  hgvsp: ENSP00000454068.1:p.Val16Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1492G>A
  hgvsp: ENSP00000394720.2:p.Val498Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.264G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1492G>A
  hgvsp: ENSP00000332204.6:p.Val498Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.513G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1328G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1693G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.647G>A
  hgvsp: ENSP00000453804.1:p.Val217Met
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33888
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val498Met
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

15-90768612-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768612
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768612
    reference: chr 15
allele count: 1
allele frequency: 4.541326067211626e-5
allele num: 22020
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.57C>T
  hgvsp: ENSP00000454068.1:p.Leu20Phe
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1504C>T
  hgvsp: ENSP00000394720.2:p.Leu502Phe
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.276C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1705C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.525C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.206C>T
  hgvsp: ENSP00000453866.1:p.Leu70Phe
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1504C>T
  hgvsp: ENSP00000332204.6:p.Leu502Phe
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.659C>T
  hgvsp: ENSP00000453804.1:p.Leu221Phe
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1489C>T
  hgvsp: ENSP00000368417.3:p.Leu497Phe
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1340C>T
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu502Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-90768614-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768614
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768614
    reference: chr 15
allele count: 22
allele frequency: 1.001274349171673e-3
allele num: 21972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.59C>T
  hgvsp: ENST00000559247.1:c.59C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1491C>T
  hgvsp: ENST00000379122.3:c.1491C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1342C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.527C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1506C>T
  hgvsp: ENST00000332496.6:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.208C>T
  hgvsp: ENST00000559983.1:c.208C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.661C>T
  hgvsp: ENST00000559074.1:c.661C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.278C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1506C>T
  hgvsp: ENST00000411539.2:c.1506C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1707C>T
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34608
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu502Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

15-90768631-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768631
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768631
    reference: chr 15
allele count: 1
allele frequency: 4.615952732644018e-5
allele num: 21664
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.225T>C
  hgvsp: ENSP00000453866.1:p.Val76Ala
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1506+2T>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.74+2T>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.676+2T>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1521+2T>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.542+2T>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1357+2T>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1722+2T>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.295T>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1521+2T>C
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1521+2T>C
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

15-90768635-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768635
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768635
    reference: chr 15
allele count: 1
allele frequency: 4.637788702346721e-5
allele num: 21562
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.676+6C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1722+6C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.74+6C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1521+6C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1506+6C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1521+6C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.229C>G
  hgvsp: ENSP00000453866.1:p.Ser77Arg
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.542+6C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.299C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1357+6C>G
  variant of: http://identifiers.org/hgnc/10730
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser77Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

15-90768643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768643
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768643
    reference: chr 15
allele count: 14
allele frequency: 6.543279117592073e-4
allele num: 21396
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1521+14C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1357+14C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.307C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1506+14C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.542+14C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.676+14C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1521+14C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.237C>T
  hgvsp: ENSP00000453866.1:p.Thr80Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.74+14C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1722+14C>T
  variant of: http://identifiers.org/hgnc/10730
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 30889
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28501
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr80Met
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

15-90768644-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768644
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768644
    reference: chr 15
allele count: 9
allele frequency: 4.223765721794631e-4
allele num: 21308
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1521+15G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1357+15G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.542+15G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.238G>A
  hgvsp: ENST00000559983.1:c.238G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.676+15G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1506+15G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.308G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.74+15G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1521+15G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1722+15G>A
  variant of: http://identifiers.org/hgnc/10730
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30164
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr80Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

15-90768660-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768660
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768660
    reference: chr 15
allele count: 1
allele frequency: 4.781943381790359e-5
allele num: 20912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1357+31G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1722+31G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.542+31G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.676+31G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.253+1G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.74+31G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1521+31G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1521+31G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1506+31G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.324G>A
  variant of: http://identifiers.org/hgnc/10730
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25713
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
hgvs: c.253+1G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

15-90768665-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768665
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768666
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 20746
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.253+12dupG
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1506+42dupG
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1521+42dupG
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1722+42dupG
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.335dupG
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.74+42dupG
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.676+42dupG
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1521+42dupG
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1357+42dupG
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.542+42dupG
  variant of: http://identifiers.org/hgnc/10730
canonical: false
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24902
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21326
  bin: 7.5e0
  variant carriers: 0
hgvs: c.253+12dupG
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

15-90768666-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768666
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768666
    reference: chr 15
allele count: 7
allele frequency: 3.380336101989569e-4
allele num: 20708
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.74+37G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.676+37G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1521+37G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.330G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1506+37G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1357+37G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.253+7G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.542+37G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1521+37G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1722+37G>C
  variant of: http://identifiers.org/hgnc/10730
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24835
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
hgvs: c.253+7G>C
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

15-90768675-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768675
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768675
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 20556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.339C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1357+46C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.253+16C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.542+46C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1722+46C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.676+46C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1521+46C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1506+46C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.74+46C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1521+46C>T
  variant of: http://identifiers.org/hgnc/10730
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23181
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3831
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

15-90768697-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768697
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768697
    reference: chr 15
allele count: 1
allele frequency: 5.002501250625313e-5
allele num: 19990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.74+68C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.542+68C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.676+68C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1506+68C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1521+68C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.361C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1357+68C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1722+68C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.253+38C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1521+68C>T
  variant of: http://identifiers.org/hgnc/10730
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

15-90768705-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768705
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768705
    reference: chr 15
allele count: 4
allele frequency: 2.017552708564511e-4
allele num: 19826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1357+76G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1521+76G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000561252
  gene symbol: SEMA4B
  hgvsc: ENST00000561252.1:n.369G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.253+46G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.74+76G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1722+76G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1521+76G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.676+76G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.542+76G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1506+76G>A
  variant of: http://identifiers.org/hgnc/10730
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22814
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

15-90768845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768845
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768845
    reference: chr 15
allele count: 1
allele frequency: 4.874244492103724e-5
allele num: 20516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.677-48G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.75-48G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1522-48G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1358-48G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1723-48G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.254-48G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.543-48G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1522-48G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1507-48G>A
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31979
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5997
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD

15-90768846-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768846
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768846
    reference: chr 15
allele count: 15
allele frequency: 7.336398317519319e-4
allele num: 20446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.677-47C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.75-47C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1358-47C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.254-47C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1507-47C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1723-47C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1522-47C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.543-47C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1522-47C>T
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31999
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13909
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23482
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

15-90768857-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768857
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768857
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 20752
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1522-36C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1358-36C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1507-36C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1522-36C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.543-36C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.254-36C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1723-36C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.75-36C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.677-36C>T
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15550
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2401
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4523
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

15-90768863-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768863
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768863
    reference: chr 15
allele count: 1
allele frequency: 4.75511174512601e-5
allele num: 21030
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1522-30C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.254-30C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1723-30C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.677-30C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.75-30C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1522-30C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.543-30C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1358-30C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1507-30C>T
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29664
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17680
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS

15-90768864-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768864
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768864
    reference: chr 15
allele count: 4
allele frequency: 1.892147587511826e-4
allele num: 21140
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1522-29G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1522-29G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1358-29G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.75-29G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1507-29G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.254-29G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.543-29G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1723-29G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.677-29G>A
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28974
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4686
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15446
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

15-90768868-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768868
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768868
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 21380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1507-25C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1358-25C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.254-25C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1522-25C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.543-25C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.75-25C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1522-25C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1723-25C>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.677-25C>G
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20293
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

15-90768871-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768871
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768871
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 21582
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1507-22A>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.254-22A>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1358-22A>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1522-22A>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1723-22A>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1522-22A>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.543-22A>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.75-22A>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.677-22A>T
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26496
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff

15-90768872-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768872
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768871
    reference: chr 15
allele count: 1
allele frequency: 4.621499214345133e-5
allele num: 21638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.543-17delC
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1522-17delC
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1358-17delC
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.75-17delC
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1522-17delC
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1723-17delC
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.677-17delC
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1507-17delC
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.254-17delC
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: TC
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/15-90768873-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768873
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768873
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 21686
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1522-20C>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.75-20C>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.254-20C>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1522-20C>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.543-20C>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1358-20C>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.677-20C>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1507-20C>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1723-20C>A
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21870
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25922
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

15-90768876-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768876
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768876
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 21914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1507-17C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1723-17C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1358-17C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.254-17C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1522-17C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1522-17C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.677-17C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.75-17C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.543-17C>T
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 25284
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22475
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19789
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

15-90768877-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768877
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768877
    reference: chr 15
allele count: 3
allele frequency: 1.363884342607747e-4
allele num: 21996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1522-16G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1522-16G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.543-16G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1723-16G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1358-16G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.75-16G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.254-16G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1507-16G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.677-16G>A
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22587
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

15-90768887-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768887
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768887
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 22714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1723-6G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1507-6G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.254-6G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.75-6G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.677-6G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1522-6G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1522-6G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1358-6G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.543-6G>A
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24414
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22210
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5678
  bin: 6.25e1
  variant carriers: 1
hgvs: c.1522-6G>A
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-90768889-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768889
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768889
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 22808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1723-4G>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1522-4G>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1358-4G>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1507-4G>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.75-4G>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.254-4G>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1522-4G>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.677-4G>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.543-4G>T
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22904
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1522-4G>T
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS

15-90768895-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768895
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768895
    reference: chr 15
allele count: 2
allele frequency: 8.628127696289905e-5
allele num: 23180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1509G>A
  hgvsp: ENST00000379122.3:c.1509G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.256G>A
  hgvsp: ENST00000559983.1:c.256G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.679G>A
  hgvsp: ENST00000559074.1:c.679G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1524G>A
  hgvsp: ENST00000411539.2:c.1524G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.545G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1524G>A
  hgvsp: ENST00000332496.6:c.1524G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.77G>A
  hgvsp: ENST00000559247.1:c.77G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1360G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1725G>A
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22203
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1524G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/15-90768896-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768896
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768896
    reference: chr 15
allele count: 10
allele frequency: 4.297378599054577e-4
allele num: 23270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.680C>A
  hgvsp: ENSP00000453804.1:p.Leu228Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1726C>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1525C>A
  hgvsp: ENSP00000394720.2:p.Leu509Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.546C>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1361C>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.78C>A
  hgvsp: ENSP00000454068.1:p.Leu27Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1510C>A
  hgvsp: ENSP00000368417.3:p.Leu504Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.257C>A
  hgvsp: ENSP00000453866.1:p.Leu87Met
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1525C>A
  hgvsp: ENSP00000332204.6:p.Leu509Met
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22028
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25227
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5791
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu509Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

15-90768906-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768906
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768906
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 23670
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1535C>T
  hgvsp: ENSP00000394720.2:p.Ala512Val
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000560993
  gene symbol: SEMA4B
  hgvsc: ENST00000560993.1:n.556C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1520C>T
  hgvsp: ENSP00000368417.3:p.Ala507Val
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.267C>T
  hgvsp: ENSP00000453866.1:p.Ala90Val
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.88C>T
  hgvsp: ENSP00000454068.1:p.Ala30Val
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.690C>T
  hgvsp: ENSP00000453804.1:p.Ala231Val
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1535C>T
  hgvsp: ENSP00000332204.6:p.Ala512Val
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1736C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1371C>T
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 26000
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5851
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala512Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

15-90768916-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768916
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768916
    reference: chr 15
allele count: 1
allele frequency: 4.03518682915019e-5
allele num: 24782
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1746C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.98C>T
  hgvsp: ENST00000559247.1:c.98C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.700C>T
  hgvsp: ENST00000559074.1:c.700C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1381C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1545C>T
  hgvsp: ENST00000411539.2:c.1545C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.277C>T
  hgvsp: ENST00000559983.1:c.277C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1530C>T
  hgvsp: ENST00000379122.3:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1545C>T
  hgvsp: ENST00000332496.6:c.1545C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19848
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19065
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His515His
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS

15-90768919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768919
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768919
    reference: chr 15
allele count: 4
allele frequency: 1.6061676839062e-4
allele num: 24904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.703G>A
  hgvsp: ENST00000559074.1:c.703G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1384G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.101G>A
  hgvsp: ENST00000559247.1:c.101G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1548G>A
  hgvsp: ENST00000332496.6:c.1548G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1749G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.280G>A
  hgvsp: ENST00000559983.1:c.280G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1533G>A
  hgvsp: ENST00000379122.3:c.1533G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1548G>A
  hgvsp: ENST00000411539.2:c.1548G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19596
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26882
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5832
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 18925
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser516Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

15-90768922-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768922
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768922
    reference: chr 15
allele count: 4
allele frequency: 1.603720631865929e-4
allele num: 24942
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1551C>T
  hgvsp: ENST00000411539.2:c.1551C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.104C>T
  hgvsp: ENST00000559247.1:c.104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1387C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.283C>T
  hgvsp: ENST00000559983.1:c.283C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.706C>T
  hgvsp: ENST00000559074.1:c.706C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1551C>T
  hgvsp: ENST00000332496.6:c.1551C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1752C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1536C>T
  hgvsp: ENST00000379122.3:c.1536C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19429
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18724
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3477
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly517Gly
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS

15-90768923-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768923
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768923
    reference: chr 15
allele count: 2
allele frequency: 8.007046200656577e-5
allele num: 24978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1388G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.105G>A
  hgvsp: ENSP00000454068.1:p.Val36Ile
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1552G>A
  hgvsp: ENSP00000332204.6:p.Val518Ile
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1753G>A
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.284G>A
  hgvsp: ENSP00000453866.1:p.Val96Ile
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1537G>A
  hgvsp: ENSP00000368417.3:p.Val513Ile
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.707G>A
  hgvsp: ENSP00000453804.1:p.Val237Ile
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1552G>A
  hgvsp: ENSP00000394720.2:p.Val518Ile
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19342
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val518Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

15-90768923-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768923
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768923
    reference: chr 15
allele count: 2
allele frequency: 8.007046200656577e-5
allele num: 24978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1388G>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.284G>T
  hgvsp: ENSP00000453866.1:p.Val96Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1537G>T
  hgvsp: ENSP00000368417.3:p.Val513Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1552G>T
  hgvsp: ENSP00000394720.2:p.Val518Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1552G>T
  hgvsp: ENSP00000332204.6:p.Val518Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.105G>T
  hgvsp: ENSP00000454068.1:p.Val36Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.707G>T
  hgvsp: ENSP00000453804.1:p.Val237Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1753G>T
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19342
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27135
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3798
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18651
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val518Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

15-90768926-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768926
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768926
    reference: chr 15
allele count: 1
allele frequency: 3.961337347488512e-5
allele num: 25244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1391G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.710G>C
  hgvsp: ENSP00000453804.1:p.Val238Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1756G>C
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1555G>C
  hgvsp: ENSP00000332204.6:p.Val519Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1540G>C
  hgvsp: ENSP00000368417.3:p.Val514Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.108G>C
  hgvsp: ENSP00000454068.1:p.Val37Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.287G>C
  hgvsp: ENSP00000453866.1:p.Val97Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1555G>C
  hgvsp: ENSP00000394720.2:p.Val519Leu
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val519Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

15-90768928-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768928
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768928
    reference: chr 15
allele count: 1
allele frequency: 3.959455178967374e-5
allele num: 25256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.712C>T
  hgvsp: ENST00000559074.1:c.712C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1758C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1557C>T
  hgvsp: ENST00000411539.2:c.1557C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.289C>T
  hgvsp: ENST00000559983.1:c.289C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1393C>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.110C>T
  hgvsp: ENST00000559247.1:c.110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1557C>T
  hgvsp: ENST00000332496.6:c.1557C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1542C>T
  hgvsp: ENST00000379122.3:c.1542C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18967
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27499
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18291
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val519Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

15-90768932-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768932
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768932
    reference: chr 15
allele count: 1
allele frequency: 3.914507163548109e-5
allele num: 25546
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1561G>T
  hgvsp: ENSP00000394720.2:p.Val521Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.716G>T
  hgvsp: ENSP00000453804.1:p.Val240Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1561G>T
  hgvsp: ENSP00000332204.6:p.Val521Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.293G>T
  hgvsp: ENSP00000453866.1:p.Val99Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1762G>T
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.114G>T
  hgvsp: ENSP00000454068.1:p.Val39Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1546G>T
  hgvsp: ENSP00000368417.3:p.Val516Leu
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1397G>T
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18674
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20962
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17978
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val521Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

15-90768938-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90768938
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 90768938
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 26022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453484
  ensembl transcript: ENST00000560089
  gene symbol: SEMA4B
  hgvsc: ENST00000560089.1:c.*1403A>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000454068
  ensembl transcript: ENST00000559247
  gene symbol: SEMA4B
  hgvsc: ENST00000559247.1:c.120A>G
  hgvsp: ENSP00000454068.1:p.Met41Val
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185033
  ensembl transcript: ENST00000558065
  gene symbol: SEMA4B
  hgvsc: ENST00000558065.1:n.1768A>G
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453804
  ensembl transcript: ENST00000559074
  gene symbol: SEMA4B
  hgvsc: ENST00000559074.1:c.722A>G
  hgvsp: ENSP00000453804.1:p.Met242Val
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000368417
  ensembl transcript: ENST00000379122
  gene symbol: SEMA4B
  hgvsc: ENST00000379122.3:c.1552A>G
  hgvsp: ENSP00000368417.3:p.Met518Val
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000394720
  ensembl transcript: ENST00000411539
  gene symbol: SEMA4B
  hgvsc: ENST00000411539.2:c.1567A>G
  hgvsp: ENSP00000394720.2:p.Met523Val
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000332204
  ensembl transcript: ENST00000332496
  gene symbol: SEMA4B
  hgvsc: ENST00000332496.6:c.1567A>G
  hgvsp: ENSP00000332204.6:p.Met523Val
  variant of: http://identifiers.org/hgnc/10730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185033
  ensembl protein: ENSP00000453866
  ensembl transcript: ENST00000559983
  gene symbol: SEMA4B
  hgvsc: ENST00000559983.1:c.299A>G
  hgvsp: ENSP00000453866.1:p.Met101Val
  variant of: http://identifiers.org/hgnc/10730
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17881
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met523Val
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

http://identifiers.org/exac.variant/12-11214092-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214092
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214092
    reference: chr 12
allele count: 1
allele frequency: 8.277186418792524e-6
allele num: 120814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14305G>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14305G>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.802G>T
  hgvsp: ENSP00000436450.1:p.Ala268Ser
  variant of: http://identifiers.org/hgnc/18877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14305G>T
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14305G>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14305G>T
  variant of: http://identifiers.org/hgnc/18020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11187
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala268Ser
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

12-11214095-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214095
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214095
    reference: chr 12
allele count: 1
allele frequency: 8.277734549608463e-6
allele num: 120806
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14308A>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14308A>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14308A>G
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14308A>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14308A>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.799A>G
  hgvsp: ENSP00000436450.1:p.Ile267Val
  variant of: http://identifiers.org/hgnc/18877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6675
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile267Val
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/12-11214098-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214098
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214098
    reference: chr 12
allele count: 1
allele frequency: 8.277186418792524e-6
allele num: 120814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14311G>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14311G>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14311G>T
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.796G>T
  hgvsp: ENSP00000436450.1:p.Ala266Ser
  variant of: http://identifiers.org/hgnc/18877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14311G>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14311G>T
  variant of: http://identifiers.org/hgnc/18020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11187
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala266Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

12-11214101-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214101
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214101
    reference: chr 12
allele count: 8
allele frequency: 6.622955162593549e-5
allele num: 120792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14314G>C
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14314G>C
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14314G>C
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14314G>C
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14314G>C
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.793G>C
  hgvsp: ENSP00000436450.1:p.Glu265Gln
  variant of: http://identifiers.org/hgnc/18877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu265Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

12-11214102-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214102
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214102
    reference: chr 12
allele count: 9
allele frequency: 7.448727922798074e-5
allele num: 120826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14315C>T
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14315C>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14315C>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14315C>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14315C>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.792C>T
  hgvsp: ENST00000533467.1:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11196
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6681
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys264Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/12-11214108-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214108
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214108
    reference: chr 12
allele count: 1
allele frequency: 8.277049397430804e-6
allele num: 120816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14321G>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14321G>T
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14321G>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14321G>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14321G>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.786G>T
  hgvsp: ENSP00000436450.1:p.Met262Ile
  variant of: http://identifiers.org/hgnc/18877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11194
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6673
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met262Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

12-11214109-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214109
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214109
    reference: chr 12
allele count: 1
allele frequency: 8.276364358664525e-6
allele num: 120826
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14322T>C
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14322T>C
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14322T>C
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14322T>C
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.785T>C
  hgvsp: ENSP00000436450.1:p.Met262Thr
  variant of: http://identifiers.org/hgnc/18877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14322T>C
  variant of: http://identifiers.org/hgnc/18020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11195
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6676
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met262Thr
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

12-11214123-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214123
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214123
    reference: chr 12
allele count: 2
allele frequency: 1.654834599281802e-5
allele num: 120858
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14336C>G
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.771C>G
  hgvsp: ENSP00000436450.1:p.Asn257Lys
  variant of: http://identifiers.org/hgnc/18877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14336C>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14336C>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14336C>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14336C>G
  variant of: http://identifiers.org/hgnc/18020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11197
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6681
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45973
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn257Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

12-11214133-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214133
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214133
    reference: chr 12
allele count: 7
allele frequency: 5.793263262434826e-5
allele num: 120830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14346G>A
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14346G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14346G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14346G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14346G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.761G>A
  hgvsp: ENSP00000436450.1:p.Ser254Asn
  variant of: http://identifiers.org/hgnc/18877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4255
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11203
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6661
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser254Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

12-11214137-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214137
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214137
    reference: chr 12
allele count: 6
allele frequency: 4.96417520229014e-5
allele num: 120866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14350G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14350G>A
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14350G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.757G>A
  hgvsp: ENSP00000436450.1:p.Glu253Lys
  variant of: http://identifiers.org/hgnc/18877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14350G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14350G>A
  variant of: http://identifiers.org/hgnc/18020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11202
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45979
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu253Lys
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/12-11214141-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214141
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214141
    reference: chr 12
allele count: 1
allele frequency: 8.269246671628215e-6
allele num: 120930
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.753T>G
  hgvsp: ENSP00000436450.1:p.Ser251Arg
  variant of: http://identifiers.org/hgnc/18877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14354T>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14354T>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14354T>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14354T>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14354T>G
  variant of: http://identifiers.org/hgnc/14920
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11202
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45993
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6677
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser251Arg
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

12-11214145-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214145
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214145
    reference: chr 12
allele count: 27383
allele frequency: 2.262758643485159e-1
allele num: 121016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14358G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14358G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14358G>A
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.749G>A
  hgvsp: ENSP00000436450.1:p.Trp250Ter
  variant of: http://identifiers.org/hgnc/18877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14358G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14358G>A
  variant of: http://identifiers.org/hgnc/18020
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 6.75e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 5.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 9.25e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 7.25e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 28485
  bin: 9.75e1
  variant carriers: 22233
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 7.75e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 5.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 6.25e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 8.75e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 8.25e1
  variant carriers: 235
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5231
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 9.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 48791
  bin: 9.75e1
  variant carriers: 24266
hgvs: p.Trp250Ter
num of homozygotes: 3059
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

12-11214149-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214149
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214149
    reference: chr 12
allele count: 1
allele frequency: 8.260639703938672e-6
allele num: 121056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14362G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14362G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14362G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.745G>A
  hgvsp: ENSP00000436450.1:p.Val249Ile
  variant of: http://identifiers.org/hgnc/18877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14362G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14362G>A
  variant of: http://identifiers.org/hgnc/14920
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27978
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val249Ile
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ

12-11214153-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214153
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214153
    reference: chr 12
allele count: 5
allele frequency: 4.129501156260323e-5
allele num: 121080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14366G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14366G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14366G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14366G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14366G>A
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.741G>A
  hgvsp: ENSP00000436450.1:p.Met247Ile
  variant of: http://identifiers.org/hgnc/18877
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27978
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5304
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Met247Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

12-11214155-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214155
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214155
    reference: chr 12
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14368A>G
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14368A>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14368A>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.739A>G
  hgvsp: ENSP00000436450.1:p.Met247Val
  variant of: http://identifiers.org/hgnc/18877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14368A>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14368A>G
  variant of: http://identifiers.org/hgnc/18020
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27978
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met247Val
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

12-11214156-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214156
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214156
    reference: chr 12
allele count: 5
allele frequency: 4.128819157720892e-5
allele num: 121100
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.738C>A
  hgvsp: ENST00000533467.1:c.738C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14369C>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14369C>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14369C>A
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14369C>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14369C>A
  variant of: http://identifiers.org/hgnc/18020
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27980
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile246Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

12-11214159-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214159
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214159
    reference: chr 12
allele count: 1
allele frequency: 8.255865792645674e-6
allele num: 121126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14372A>C
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14372A>C
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.735A>C
  hgvsp: ENST00000533467.1:c.735A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14372A>C
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14372A>C
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14372A>C
  variant of: http://identifiers.org/hgnc/18020
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27979
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48570
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile245Ile
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

12-11214161-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214161
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214161
    reference: chr 12
allele count: 5
allele frequency: 4.127523980914329e-5
allele num: 121138
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.733A>G
  hgvsp: ENSP00000436450.1:p.Ile245Val
  variant of: http://identifiers.org/hgnc/18877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14374A>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14374A>G
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14374A>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14374A>G
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14374A>G
  variant of: http://identifiers.org/hgnc/18020
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27979
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile245Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

12-11214162-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214162
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214162
    reference: chr 12
allele count: 5
allele frequency: 4.127251415647236e-5
allele num: 121146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14375C>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14375C>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.732C>T
  hgvsp: ENST00000533467.1:c.732C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14375C>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14375C>T
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14375C>T
  variant of: http://identifiers.org/hgnc/14920
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27979
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Ser244Ser
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

12-11214165-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 11214165
    reference: chr 12
  end: Position
    type: ExactPosition
    position: 11214165
    reference: chr 12
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000226761
  ensembl protein: ENSP00000436450
  ensembl transcript: ENST00000533467
  gene symbol: TAS2R46
  hgvsc: ENST00000533467.1:c.729G>A
  hgvsp: ENST00000533467.1:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000536668
  gene symbol: PRR4
  hgvsc: ENST00000536668.1:n.178-14378G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000535024
  gene symbol: PRR4
  hgvsc: ENST00000535024.1:n.193-14378G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000541977
  gene symbol: PRR4
  hgvsc: ENST00000541977.1:n.124-14378G>A
  variant of: http://identifiers.org/hgnc/18020
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000212127
  ensembl transcript: ENST00000381852
  gene symbol: TAS2R14
  hgvsc: ENST00000381852.4:n.153-14378G>A
  variant of: http://identifiers.org/hgnc/14920
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000111215
  ensembl transcript: ENST00000546265
  gene symbol: PRR4
  hgvsc: ENST00000546265.1:n.359-14378G>A
  variant of: http://identifiers.org/hgnc/18020
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu243Leu
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 15718
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26606
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2413
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6096
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.928e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.19523e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.2e-2

GenotypeQuality
all individuals: 26563
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 16056
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 9.75e1
variant carriers: 56

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1142
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1390
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 439
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6115
bin: 6.25e1
variant carriers: 2

African
type: Population
allele count: 6
allele frequency: 2.575107296137339e-3
allele num: 2330
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.587155963302753e-3
allele num: 218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.092050209205021e-3
allele num: 478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 46
allele frequency: 4.521328877530961e-3
allele num: 10174
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

DP
type: SiteQuality
SIO_000300: 5.2206e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.95e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.85e0

QD
type: SiteQuality
SIO_000300: 1.329e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

GenotypeQuality
all individuals: 1787
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26476
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 1390
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 433
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 235
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6131
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14588
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.109704641350211e-3
allele num: 474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 6.459948320413436e-3
allele num: 2322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.629629629629629e-3
allele num: 216
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.303e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.13e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 5.18422e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26611
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2400
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.310344827586207e-4
allele num: 2320
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.24750499001996e-4
allele num: 8016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.99e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.14e-2

DP
type: SiteQuality
SIO_000300: 5.19961e5

QD
type: SiteQuality
SIO_000300: 1.545e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

VQSLOD
type: SiteQuality
SIO_000300: 9.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 235
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 15489
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 190
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2344
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6230
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26727
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 8.823529411764706e-4
allele num: 10200
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.24750499001996e-4
allele num: 8016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

DP
type: SiteQuality
SIO_000300: 5.19942e5

VQSLOD
type: SiteQuality
SIO_000300: -6.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.14e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.013e1

FS
type: SiteQuality
SIO_000300: 3.281e0

GenotypeQuality
all individuals: 236
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2622
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14788
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1438
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6260
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8016
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.651e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.21e-2

QD
type: SiteQuality
SIO_000300: 5.24e0

DP
type: SiteQuality
SIO_000300: 5.17632e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 14504
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27354
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6360
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.498126405196103e-4
allele num: 8006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2334
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.259e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

FS
type: SiteQuality
SIO_000300: 4.69e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.27e-2

DP
type: SiteQuality
SIO_000300: 5.15039e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.905e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.567e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 5.12084e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.982032341784787e-5
allele num: 10018
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2298
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.508780732563974e-4
allele num: 7972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1020
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

FS
type: SiteQuality
SIO_000300: 4.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.339e0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.04e-2

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

DP
type: SiteQuality
SIO_000300: 4.90847e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1018
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.256597134958532e-4
allele num: 7958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9824
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 7.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.79651e5

FS
type: SiteQuality
SIO_000300: 3.645e0

MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.722e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.44e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2290
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 8.791760864104496e-4
allele num: 7962
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.80069e5

BaseQRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.312e1

MQRankSum
type: SiteQuality
SIO_000300: 7.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.41e-2

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 4.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.02e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7954
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.3039e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.49e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

MQRankSum
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 4.75522e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.040366208905535e-4
allele num: 9612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

BaseQRankSum
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MQRankSum
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QD
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: -6.73e-2

DP
type: SiteQuality
SIO_000300: 4.64815e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.040582726326743e-4
allele num: 9610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2252
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.242152466367713e-3
allele num: 446
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ClippingRankSum
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MQRankSum
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -6.7e-2

QD
type: SiteQuality
SIO_000300: 1.596e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.64801e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 235
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GenotypeQuality
all individuals: 192
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.261670451678022e-4
allele num: 7926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9388
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.099999999999999e-2

FS
type: SiteQuality
SIO_000300: 2.307e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.027e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.08e0

DP
type: SiteQuality
SIO_000300: 4.45625e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.164e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 1.75e1
variant carriers: 3

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4678
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1413
bin: 6.75e1
variant carriers: 2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 26

GenotypeQuality
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bin: 8.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 19
allele frequency: 8.589511754068717e-3
allele num: 2212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.070663811563169e-4
allele num: 9340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.293577981651376e-3
allele num: 436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1172
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.385964912280702e-3
allele num: 228
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

DP
type: SiteQuality
SIO_000300: 4.43343e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.46e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.358e1

GenotypeQuality
all individuals: 1067
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 236
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.5662100456621e-4
allele num: 2190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.823e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.599e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.341e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

DP
type: SiteQuality
SIO_000300: 4.16962e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.61e-2

QD
type: SiteQuality
SIO_000300: 9.77e0

VQSLOD
type: SiteQuality
SIO_000300: -2.596e0

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 2290
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 453
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variant carriers: 0

GenotypeQuality
all individuals: 30301
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GenotypeQuality
all individuals: 420
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variant carriers: 0

GenotypeQuality
all individuals: 1370
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2702
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6080
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variant carriers: 0

GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
all individuals: 149
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 1066
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variant carriers: 1

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.599816007359706e-4
allele num: 2174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8998
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 3.495e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.67e-2

DP
type: SiteQuality
SIO_000300: 4.08218e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.735e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 288
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2711
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 1

GenotypeQuality
all individuals: 1346
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variant carriers: 0

GenotypeQuality
all individuals: 368
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variant carriers: 1

GenotypeQuality
all individuals: 176
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variant carriers: 1

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 233
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GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 428
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variant carriers: 0

GenotypeQuality
all individuals: 1867
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GenotypeQuality
all individuals: 186
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GenotypeQuality
all individuals: 5864
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variant carriers: 0

GenotypeQuality
all individuals: 419
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GenotypeQuality
all individuals: 149
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GenotypeQuality
all individuals: 1071
bin: 9.75e1
variant carriers: 14

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7870
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 5.996309963099631e-3
allele num: 2168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.12637981527371e-4
allele num: 8878
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.630000000000001e-2

DP
type: SiteQuality
SIO_000300: 3.9474e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 1.474e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

GenotypeQuality
all individuals: 367
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 232
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GenotypeQuality
all individuals: 1750
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GenotypeQuality
all individuals: 191
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GenotypeQuality
all individuals: 417
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GenotypeQuality
all individuals: 1337
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GenotypeQuality
all individuals: 197
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GenotypeQuality
all individuals: 2903
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GenotypeQuality
all individuals: 27549
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5763
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GenotypeQuality
all individuals: 1068
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variant carriers: 10

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 7
allele frequency: 3.231763619575254e-3
allele num: 2166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8822
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.273560876209883e-4
allele num: 7852
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.439024390243902e-3
allele num: 410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.414e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.90044e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.65e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

GenotypeQuality
all individuals: 182
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
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GenotypeQuality
all individuals: 3682
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GenotypeQuality
all individuals: 406
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GenotypeQuality
all individuals: 359
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GenotypeQuality
all individuals: 134
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GenotypeQuality
all individuals: 393
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GenotypeQuality
all individuals: 185
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GenotypeQuality
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GenotypeQuality
all individuals: 322
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GenotypeQuality
all individuals: 4880
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GenotypeQuality
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GenotypeQuality
all individuals: 152
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GenotypeQuality
all individuals: 1059
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GenotypeQuality
all individuals: 230
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GenotypeQuality
all individuals: 102
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GenotypeQuality
all individuals: 1185
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2152
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.628664495114007e-3
allele num: 614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.746e0

QD
type: SiteQuality
SIO_000300: 1.245e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.56e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.419e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 3.58759e5

GenotypeQuality
all individuals: 424
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
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GenotypeQuality
all individuals: 140
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 1109
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.57e-2

QD
type: SiteQuality
SIO_000300: 1.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

FS
type: SiteQuality
SIO_000300: 3.985e0

DP
type: SiteQuality
SIO_000300: 3.51622e5

GenotypeQuality
all individuals: 4566
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 494
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 128
bin: 5.25e1
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GenotypeQuality
all individuals: 3615
bin: 2.5e0
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GenotypeQuality
all individuals: 124
bin: 4.25e1
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GenotypeQuality
all individuals: 21307
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GenotypeQuality
all individuals: 238
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GenotypeQuality
all individuals: 1061
bin: 9.75e1
variant carriers: 7

GenotypeQuality
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GenotypeQuality
all individuals: 1114
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GenotypeQuality
all individuals: 1618
bin: 2.25e1
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GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 301
bin: 1.25e1
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GenotypeQuality
all individuals: 182
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GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 428
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 8.19672131147541e-3
allele num: 610
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.613695765812859e-4
allele num: 7652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1182
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.50685e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.389999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.247e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7582
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.3229e5

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.439999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.361e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.364256480218281e-4
allele num: 7330
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.684e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

QD
type: SiteQuality
SIO_000300: 1.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.729999999999999e-2

DP
type: SiteQuality
SIO_000300: 3.00312e5

VQSLOD
type: SiteQuality
SIO_000300: -2.445e0

GenotypeQuality
all individuals: 1064
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 9.560229445506692e-4
allele num: 2092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.226993865030675e-4
allele num: 8150
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.376273052573631e-4
allele num: 7266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.284e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.95e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.249e-1

DP
type: SiteQuality
SIO_000300: 2.98123e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.793e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.063e0

MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

GenotypeQuality
all individuals: 2082
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 226
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variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.366120218579235e-4
allele num: 7320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.66e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.003e0

DP
type: SiteQuality
SIO_000300: 4.27619e5

VQSLOD
type: SiteQuality
SIO_000300: -1.389e0

MQ
type: SiteQuality
SIO_000300: 5.712e1

MQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

QD
type: SiteQuality
SIO_000300: 7.28e0

GenotypeQuality
all individuals: 551
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5953
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 196
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GenotypeQuality
all individuals: 252
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 2.061572292468389e-3
allele num: 7276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2184
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.65e-2

QD
type: SiteQuality
SIO_000300: 1.173e1

VQSLOD
type: SiteQuality
SIO_000300: -5.051e-1

FS
type: SiteQuality
SIO_000300: 3.382e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.855e0

DP
type: SiteQuality
SIO_000300: 4.29013e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.196e0

MQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.623e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 4.56994e5

QD
type: SiteQuality
SIO_000300: 5.33e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 1
allele frequency: 4.557885141294439e-4
allele num: 2194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.62e1

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.77e-1

DP
type: SiteQuality
SIO_000300: 4.78568e5

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 132
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.061005770816158e-4
allele num: 9704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.668089647812167e-4
allele num: 7496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.061e1

VQSLOD
type: SiteQuality
SIO_000300: 3.59e-1

FS
type: SiteQuality
SIO_000300: 2.689e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.89e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

DP
type: SiteQuality
SIO_000300: 4.86368e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 791
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 335
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: -1.799e0

QD
type: SiteQuality
SIO_000300: 6.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.59e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 5.00399e5

GenotypeQuality
all individuals: 24839
bin: 7.5e0
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.27e0

DP
type: SiteQuality
SIO_000300: 5.08984e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.256e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.45e-2

GenotypeQuality
all individuals: 18912
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.001803245842517e-4
allele num: 9982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 2.515e0

DP
type: SiteQuality
SIO_000300: 5.10649e5

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQ
type: SiteQuality
SIO_000300: 5.747e1

VQSLOD
type: SiteQuality
SIO_000300: 8.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.44e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.778e1

GenotypeQuality
all individuals: 959
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19458
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 7.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.522e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.278e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.41e-2

QD
type: SiteQuality
SIO_000300: 7.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 5.14425e5

GenotypeQuality
all individuals: 266
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 328
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 1

GenotypeQuality
all individuals: 23912
bin: 7.5e0
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.94e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.32e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.511e0

DP
type: SiteQuality
SIO_000300: 5.20286e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 489
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23721
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5273
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 327
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.947533896639811e-4
allele num: 10178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.91e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.21196e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.32e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeQuality
all individuals: 356
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21327
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.05e-2

QD
type: SiteQuality
SIO_000300: 1.008e1

VQSLOD
type: SiteQuality
SIO_000300: -1.818e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

DP
type: SiteQuality
SIO_000300: 5.38076e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
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GenotypeQuality
all individuals: 1798
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 21922
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7842
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.39243e5

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.02e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20088
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21262
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3675
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10854
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.824858757062147e-3
allele num: 708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 5.44648e5

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.94e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.325259515570934e-4
allele num: 2312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 8.247800586510264e-4
allele num: 10912
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.134e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.95e-2

QD
type: SiteQuality
SIO_000300: 1.248e1

DP
type: SiteQuality
SIO_000300: 5.46157e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 964
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.155e0

BaseQRankSum
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SIO_000300: -6.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.03e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 3.952e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.57511e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.243471773190749e-4
allele num: 8042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1050
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2404
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.01e-1

DP
type: SiteQuality
SIO_000300: 5.63952e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
SIO_000300: -1.689e0

QD
type: SiteQuality
SIO_000300: 1.07e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.67e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

FS
type: SiteQuality
SIO_000300: 1.5452e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.677570877369569e-4
allele num: 11922
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.912045889101338e-3
allele num: 1046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8048
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.66e-2

QD
type: SiteQuality
SIO_000300: 1.024e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.66565e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 3.315e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.676727028839705e-4
allele num: 11928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.48323814253787e-4
allele num: 8054
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.628e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.67e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.67094e5

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.97e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.2e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2430
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 9.505703422053232e-4
allele num: 1052
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.241619071268935e-4
allele num: 8054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-2

DP
type: SiteQuality
SIO_000300: 5.67861e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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African
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South Asian
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 1.677852348993289e-4
allele num: 11920
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
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East Asian
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Other
type: Population
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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BaseQRankSum
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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DP
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3317
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4104
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5800
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.275405494869249e-5
allele num: 12084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 924
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 5.70825e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.151e-1

FS
type: SiteQuality
SIO_000300: 2.276e0

QD
type: SiteQuality
SIO_000300: 9.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.56e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 948
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4316
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5841
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.165931732810714e-5
allele num: 12246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1086
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.73107e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.857e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.156e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.46e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
all individuals: 3512
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17198
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3984
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22101
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5806
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.79185e5

QD
type: SiteQuality
SIO_000300: 3.063e1

VQSLOD
type: SiteQuality
SIO_000300: 7.199999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.32e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45969
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6680
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.42e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.677e0

VQSLOD
type: SiteQuality
SIO_000300: 1.32e-1

DP
type: SiteQuality
SIO_000300: 4.282565e6

FS
type: SiteQuality
SIO_000300: 4.06e0

MQ
type: SiteQuality
SIO_000300: 5.904e1

MQRankSum
type: SiteQuality
SIO_000300: -1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.119e0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45969
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1206
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.013787510137875e-4
allele num: 9864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

QD
type: SiteQuality
SIO_000300: 1.655e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.62e-1

DP
type: SiteQuality
SIO_000300: 4.282344e6

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6674
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45970
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.013787510137875e-4
allele num: 9864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 4.282528e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.464e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.671e0

MQRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

GenotypeQuality
all individuals: 1204
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6669
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 992
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 45965
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 86
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.494229443328637e-5
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.537205081669691e-4
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.253e0

DP
type: SiteQuality
SIO_000300: 4.282781e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -1.737e0

FS
type: SiteQuality
SIO_000300: 5.473e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 5.886e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.55e-1

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45973
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 992
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.493330935467435e-5
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.467406380027739e-4
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.369e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

DP
type: SiteQuality
SIO_000300: 4.283717e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.19e0

GenotypeQuality
all individuals: 992
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45971
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.679999999999999e-1

FS
type: SiteQuality
SIO_000300: 4.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.004e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

DP
type: SiteQuality
SIO_000300: 4.283662e6

MQRankSum
type: SiteQuality
SIO_000300: -1.004e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.39e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 132
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45971
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

FS
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 4.283618e6

MQRankSum
type: SiteQuality
SIO_000300: -7.25e-1

QD
type: SiteQuality
SIO_000300: 1.395e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.64e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.23e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 4.284234e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

FS
type: SiteQuality
SIO_000300: 3.695e0

QD
type: SiteQuality
SIO_000300: 1.6e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.14e0

GenotypeQuality
all individuals: 943
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 45978
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496942079386017e-5
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.015722636565209e-4
allele num: 9922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.027550711474417e-4
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

FS
type: SiteQuality
SIO_000300: 1.0099e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.94e0

VQSLOD
type: SiteQuality
SIO_000300: -2.303e0

QD
type: SiteQuality
SIO_000300: 5.9e-1

MQ
type: SiteQuality
SIO_000300: 5.639e1

DP
type: SiteQuality
SIO_000300: 4.285968e6

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6662
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.006441223832528e-4
allele num: 9936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.026634382566586e-4
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496537665997182e-5
allele num: 66718
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 4.285971e6

FS
type: SiteQuality
SIO_000300: 6.653e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

QD
type: SiteQuality
SIO_000300: 5.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.107e0

VQSLOD
type: SiteQuality
SIO_000300: -2.356e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.977e0

MQ
type: SiteQuality
SIO_000300: 5.633e1

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.969e0

DP
type: SiteQuality
SIO_000300: 4.286093e6

QD
type: SiteQuality
SIO_000300: 1.649e1

VQSLOD
type: SiteQuality
SIO_000300: -8.51e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.504e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.37e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1102
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 828
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 9

European (Finnish)
type: Population
allele count: 1740
allele frequency: 2.632375189107413e-1
allele num: 6610
num of homozygotes: 219

South Asian
type: Population
allele count: 3066
allele frequency: 1.857506361323155e-1
allele num: 16506
num of homozygotes: 287

Latino
type: Population
allele count: 2821
allele frequency: 2.442424242424242e-1
allele num: 11550
num of homozygotes: 325

European (Non-Finnish)
type: Population
allele count: 15444
allele frequency: 2.314609435885139e-1
allele num: 66724
num of homozygotes: 1775

East Asian
type: Population
allele count: 1837
allele frequency: 2.124681933842239e-1
allele num: 8646
num of homozygotes: 194

African
type: Population
allele count: 2269
allele frequency: 2.252332737740719e-1
allele num: 10074
num of homozygotes: 237

Other
type: Population
allele count: 206
allele frequency: 2.273730684326711e-1
allele num: 906
num of homozygotes: 22

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.28e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 7.171271e6

QD
type: SiteQuality
SIO_000300: 1.556e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-2

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48568
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.712e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.824e0

VQSLOD
type: SiteQuality
SIO_000300: -3.874e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

DP
type: SiteQuality
SIO_000300: 6.800957e6

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

FS
type: SiteQuality
SIO_000300: 8.331e0

QD
type: SiteQuality
SIO_000300: 1.434e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 48565
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 835
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.875567845151097e-5
allele num: 10126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.317e0

MQRankSum
type: SiteQuality
SIO_000300: -2.898e0

QD
type: SiteQuality
SIO_000300: 3.6e-1

FS
type: SiteQuality
SIO_000300: 8.119999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.813e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

MQ
type: SiteQuality
SIO_000300: 5.815e1

DP
type: SiteQuality
SIO_000300: 6.801224e6

GenotypeQuality
all individuals: 1122
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5318
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48569
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.337e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

QD
type: SiteQuality
SIO_000300: 1.912e1

FS
type: SiteQuality
SIO_000300: 7.012e0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.56e-1

DP
type: SiteQuality
SIO_000300: 6.80131e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
all individuals: 1032
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5329
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 136
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48565
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.848335631278314e-5
allele num: 10154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.9e0

QD
type: SiteQuality
SIO_000300: 7.5e-1

MQ
type: SiteQuality
SIO_000300: 5.823e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.02e0

FS
type: SiteQuality
SIO_000300: 8.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.013e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.55e-1

DP
type: SiteQuality
SIO_000300: 6.801599e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-2

GenotypeQuality
all individuals: 831
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5338
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 6.801855e6

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

QD
type: SiteQuality
SIO_000300: 1.379e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.27e0

FS
type: SiteQuality
SIO_000300: 3.518e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

GenotypeQuality
all individuals: 1006
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5352
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48563
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 836
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.817396426467701e-5
allele num: 10186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.845e0

DP
type: SiteQuality
SIO_000300: 6.802037e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.08e-1

QD
type: SiteQuality
SIO_000300: 7.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 9.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.807e1

VQSLOD
type: SiteQuality
SIO_000300: -3.797e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

GenotypeQuality
all individuals: 5364
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48563
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.803921568627451e-5
allele num: 10200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 6.802182e6

MQRankSum
type: SiteQuality
SIO_000300: -2.563e0

VQSLOD
type: SiteQuality
SIO_000300: -2.437e0

FS
type: SiteQuality
SIO_000300: 2.474e0

MQ
type: SiteQuality
SIO_000300: 5.815e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

QD
type: SiteQuality
SIO_000300: 1.116e1