15-43815983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43815983
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43815983
    reference: chr 15
allele count: 2
allele frequency: 1.674817444898506e-5
allele num: 119416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2312G>A
  hgvsp: ENSP00000382380.1:p.Ser771Asn
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3026G>A
  hgvsp: ENSP00000371462.1:p.Ser1009Asn
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2312G>A
  hgvsp: ENSP00000300231.5:p.Ser771Asn
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5840
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7804
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser771Asn
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-43815988-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43815988
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43815988
    reference: chr 15
allele count: 1
allele frequency: 8.371423309391063e-6
allele num: 119454
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2317T>C
  hgvsp: ENSP00000300231.5:p.Tyr773His
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2317T>C
  hgvsp: ENSP00000382380.1:p.Tyr773His
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3031T>C
  hgvsp: ENSP00000371462.1:p.Tyr1011His
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20548
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42652
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr773His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

15-43815989-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43815989
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43815989
    reference: chr 15
allele count: 16
allele frequency: 1.339338032177596e-4
allele num: 119462
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3032A>G
  hgvsp: ENSP00000371462.1:p.Tyr1011Cys
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2318A>G
  hgvsp: ENSP00000382380.1:p.Tyr773Cys
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2318A>G
  hgvsp: ENSP00000300231.5:p.Tyr773Cys
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30205
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42578
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7849
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Tyr773Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

15-43815996-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43815996
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43815996
    reference: chr 15
allele count: 1
allele frequency: 8.370021929457456e-6
allele num: 119474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2325G>A
  hgvsp: ENST00000399453.1:c.2325G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2325G>A
  hgvsp: ENST00000300231.5:c.2325G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3039G>A
  hgvsp: ENST00000382031.1:c.3039G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7857
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42069
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu775Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

15-43815999-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43815999
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43815999
    reference: chr 15
allele count: 19729
allele frequency: 1.650879453751276e-1
allele num: 119506
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2328C>T
  hgvsp: ENST00000300231.5:c.2328C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2328C>T
  hgvsp: ENST00000399453.1:c.2328C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3042C>T
  hgvsp: ENST00000382031.1:c.3042C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.25e1
  variant carriers: 439
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 3.75e1
  variant carriers: 2490
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.5e0
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 6.75e1
  variant carriers: 600
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 4.25e1
  variant carriers: 2356
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 1.75e1
  variant carriers: 439
genotype depth: GenotypeDepth
  all individuals: 21670
  bin: 2.25e1
  variant carriers: 826
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 4.75e1
  variant carriers: 2027
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.25e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 5.25e1
  variant carriers: 1563
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 3.25e1
  variant carriers: 2188
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 16436
  bin: 2.75e1
  variant carriers: 1545
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 6.25e1
  variant carriers: 853
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 5.75e1
  variant carriers: 1216
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 2.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 9.25e1
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 17332
  bin: 9.75e1
  variant carriers: 17149
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 30843
  bin: 6.25e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 8.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 8.25e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 5428
  bin: 6.75e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 7.25e1
  variant carriers: 65
hgvs: p.Pro776Pro
num of homozygotes: 1822
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

15-43816000-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816000
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816000
    reference: chr 15
allele count: 1
allele frequency: 8.362602441879913e-6
allele num: 119580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3043G>A
  hgvsp: ENSP00000371462.1:p.Gly1015Arg
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2329G>A
  hgvsp: ENSP00000300231.5:p.Gly777Arg
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2329G>A
  hgvsp: ENSP00000382380.1:p.Gly777Arg
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7448
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5715
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34082
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly777Arg
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

15-43816004-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816004
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816004
    reference: chr 15
allele count: 1
allele frequency: 8.362322718758362e-6
allele num: 119584
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3047C>G
  hgvsp: ENSP00000371462.1:p.Pro1016Arg
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2333C>G
  hgvsp: ENSP00000300231.5:p.Pro778Arg
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2333C>G
  hgvsp: ENSP00000382380.1:p.Pro778Arg
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18271
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33918
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2948
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5708
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro778Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: DP

15-43816010-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816010
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816010
    reference: chr 15
allele count: 10
allele frequency: 8.360924383799873e-5
allele num: 119604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3053G>T
  hgvsp: ENSP00000371462.1:p.Gly1018Val
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2339G>T
  hgvsp: ENSP00000300231.5:p.Gly780Val
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2339G>T
  hgvsp: ENSP00000382380.1:p.Gly780Val
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21822
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7460
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5721
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly780Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

15-43816015-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816015
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816015
    reference: chr 15
allele count: 1
allele frequency: 8.358967500334358e-6
allele num: 119632
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2344G>C
  hgvsp: ENSP00000382380.1:p.Gly782Arg
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3058G>C
  hgvsp: ENSP00000371462.1:p.Gly1020Arg
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2344G>C
  hgvsp: ENSP00000300231.5:p.Gly782Arg
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5711
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2940
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7387
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly782Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

15-43816018-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816018
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816018
    reference: chr 15
allele count: 2
allele frequency: 1.67221283925018e-5
allele num: 119602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3061C>T
  hgvsp: ENSP00000371462.1:p.Pro1021Ser
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2347C>T
  hgvsp: ENSP00000300231.5:p.Pro783Ser
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2347C>T
  hgvsp: ENSP00000382380.1:p.Pro783Ser
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2941
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5712
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33448
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro783Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

15-43816020-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816020
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816020
    reference: chr 15
allele count: 5
allele frequency: 4.181231288989982e-5
allele num: 119582
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2349A>T
  hgvsp: ENST00000300231.5:c.2349A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3063A>T
  hgvsp: ENST00000382031.1:c.3063A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2349A>T
  hgvsp: ENST00000399453.1:c.2349A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18314
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33776
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2919
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro783Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

15-43816023-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816023
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816023
    reference: chr 15
allele count: 7
allele frequency: 5.855976442243341e-5
allele num: 119536
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2352C>T
  hgvsp: ENST00000300231.5:c.2352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2352C>T
  hgvsp: ENST00000399453.1:c.2352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3066C>T
  hgvsp: ENST00000382031.1:c.3066C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33306
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5711
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7290
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2919
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe784Phe
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-43816035-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816035
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816035
    reference: chr 15
allele count: 9
allele frequency: 7.812228742057567e-5
allele num: 115204
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2364A>C
  hgvsp: ENSP00000382380.1:p.Gln788His
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3078A>C
  hgvsp: ENSP00000371462.1:p.Gln1026His
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2364A>C
  hgvsp: ENSP00000300231.5:p.Gln788His
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20523
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7869
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5432
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6672
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30926
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln788His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

15-43816035-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816035
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816035
    reference: chr 15
allele count: 1
allele frequency: 8.680254157841742e-6
allele num: 115204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3078A>G
  hgvsp: ENST00000382031.1:c.3078A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2364A>G
  hgvsp: ENST00000300231.5:c.2364A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2364A>G
  hgvsp: ENST00000399453.1:c.2364A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7869
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30926
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5432
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6672
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln788Gln
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ

15-43816041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816041
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816041
    reference: chr 15
allele count: 2
allele frequency: 1.668557698725222e-5
allele num: 119864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3084C>T
  hgvsp: ENST00000382031.1:c.3084C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2370C>T
  hgvsp: ENST00000300231.5:c.2370C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2370C>T
  hgvsp: ENST00000399453.1:c.2370C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18290
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7661
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6834
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala790Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

15-43816042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816042
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816042
    reference: chr 15
allele count: 3
allele frequency: 2.502794787512722e-5
allele num: 119866
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2371G>A
  hgvsp: ENSP00000300231.5:p.Asp791Asn
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3085G>A
  hgvsp: ENSP00000371462.1:p.Asp1029Asn
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2371G>A
  hgvsp: ENSP00000382380.1:p.Asp791Asn
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6835
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33398
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp791Asn
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP

15-43816048-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816048
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816048
    reference: chr 15
allele count: 1
allele frequency: 8.338892595063375e-6
allele num: 119920
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2377G>C
  hgvsp: ENSP00000300231.5:p.Ala793Pro
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2377G>C
  hgvsp: ENSP00000382380.1:p.Ala793Pro
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3091G>C
  hgvsp: ENSP00000371462.1:p.Ala1031Pro
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7689
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6834
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33395
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala793Pro
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

15-43816054-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816054
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816054
    reference: chr 15
allele count: 1
allele frequency: 8.336112037345782e-6
allele num: 119960
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2383C>G
  hgvsp: ENSP00000300231.5:p.Pro795Ala
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3097C>G
  hgvsp: ENSP00000371462.1:p.Pro1033Ala
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2383C>G
  hgvsp: ENSP00000382380.1:p.Pro795Ala
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8087
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33475
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3119
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6837
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7691
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro795Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

15-43816061-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816061
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816061
    reference: chr 15
allele count: 3
allele frequency: 2.4997500249975e-5
allele num: 120012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3104C>T
  hgvsp: ENSP00000371462.1:p.Thr1035Ile
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2390C>T
  hgvsp: ENSP00000382380.1:p.Thr797Ile
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2390C>T
  hgvsp: ENSP00000300231.5:p.Thr797Ile
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7716
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6838
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33681
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr797Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

15-43816076-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816076
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816076
    reference: chr 15
allele count: 1
allele frequency: 8.329723786359244e-6
allele num: 120052
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2405A>G
  hgvsp: ENSP00000382380.1:p.Tyr802Cys
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2405A>G
  hgvsp: ENSP00000300231.5:p.Tyr802Cys
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3119A>G
  hgvsp: ENSP00000371462.1:p.Tyr1040Cys
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7707
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6837
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3159
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr802Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

15-43816082-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816082
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816082
    reference: chr 15
allele count: 7
allele frequency: 5.829447035309794e-5
allele num: 120080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2411C>T
  hgvsp: ENSP00000382380.1:p.Thr804Met
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2411C>T
  hgvsp: ENSP00000300231.5:p.Thr804Met
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3125C>T
  hgvsp: ENSP00000371462.1:p.Thr1042Met
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3160
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7728
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6842
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr804Met
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

10-126715492-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715492
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715492
    reference: chr 10
allele count: 2
allele frequency: 1.658594838452863e-5
allele num: 120584
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.837C>T
  hgvsp: ENST00000309035.6:c.837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12074C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12074C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12074C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+1035C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12074C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12074C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5024
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7815
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr279Thr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

10-126715495-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715495
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715495
    reference: chr 10
allele count: 58
allele frequency: 4.808409742832983e-4
allele num: 120622
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.834C>A
  hgvsp: ENST00000309035.6:c.834C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12071C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12071C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12071C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12071C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12071C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+1032C>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5639
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser278Ser
num of homozygotes: 2
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

10-126715498-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715498
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715498
    reference: chr 10
allele count: 3
allele frequency: 2.486448853747078e-5
allele num: 120654
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.831G>A
  hgvsp: ENST00000309035.6:c.831G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+1029G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12068G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12068G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12068G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12068G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12068G>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39684
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu277Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

10-126715500-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715500
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715500
    reference: chr 10
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12066C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12066C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12066C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+1027C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12066C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.829C>T
  hgvsp: ENST00000309035.6:c.829C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12066C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7818
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu277Leu
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

10-126715509-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715509
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715509
    reference: chr 10
allele count: 2
allele frequency: 1.657110661849998e-5
allele num: 120692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12057G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12057G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.820G>A
  hgvsp: ENSP00000311825.6:p.Glu274Lys
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12057G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+1018G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12057G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12057G>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5660
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7820
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu274Lys
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-126715510-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715510
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715510
    reference: chr 10
allele count: 3
allele frequency: 2.485871961021528e-5
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12056C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12056C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12056C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12056C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.819C>T
  hgvsp: ENST00000309035.6:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+1017C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12056C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7823
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5665
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr273Tyr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

10-126715510-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715510
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715511
    reference: chr 10
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12055dupA
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.818dupA
  hgvsp: ENSP00000311825.6:p.Tyr273Ter
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12055dupA
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+1016dupA
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12055dupA
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12055dupA
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12055dupA
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5665
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr273Ter
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

10-126715518-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715518
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715518
    reference: chr 10
allele count: 2
allele frequency: 1.656698861847882e-5
allele num: 120722
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.811G>A
  hgvsp: ENSP00000311825.6:p.Glu271Lys
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12048G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12048G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12048G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+1009G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12048G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12048G>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5658
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7822
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Glu271Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

15-43816083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816083
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816083
    reference: chr 15
allele count: 1
allele frequency: 8.328613785521537e-6
allele num: 120068
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2412G>A
  hgvsp: ENST00000300231.5:c.2412G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3126G>A
  hgvsp: ENST00000382031.1:c.3126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2412G>A
  hgvsp: ENST00000399453.1:c.2412G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6838
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7710
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33763
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr804Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

15-43816102-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43816102
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 43816102
    reference: chr 15
allele count: 1
allele frequency: 8.326810664979099e-6
allele num: 120094
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000300231
  ensembl transcript: ENST00000300231
  gene symbol: MAP1A
  hgvsc: ENST00000300231.5:c.2431T>C
  hgvsp: ENSP00000300231.5:p.Tyr811His
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000382380
  ensembl transcript: ENST00000399453
  gene symbol: MAP1A
  hgvsc: ENST00000399453.1:c.2431T>C
  hgvsp: ENSP00000382380.1:p.Tyr811His
  variant of: http://identifiers.org/hgnc/6835
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000166963
  ensembl protein: ENSP00000371462
  ensembl transcript: ENST00000382031
  gene symbol: MAP1A
  hgvsc: ENST00000382031.1:c.3145T>C
  hgvsp: ENSP00000371462.1:p.Tyr1049His
  variant of: http://identifiers.org/hgnc/6835
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7767
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6840
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2970
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3199
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Tyr811His
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

10-126715519-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715519
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715519
    reference: chr 10
allele count: 351
allele frequency: 2.90721751950569e-3
allele num: 120734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+1008C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12047C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12047C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12047C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12047C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.810C>T
  hgvsp: ENST00000309035.6:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12047C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 14782
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 30540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Tyr270Tyr
num of homozygotes: 6
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/10-126715526-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715526
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715526
    reference: chr 10
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12040T>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.803T>G
  hgvsp: ENSP00000311825.6:p.Met268Arg
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12040T>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12040T>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12040T>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+1001T>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12040T>G
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39591
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met268Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

10-126715532-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715532
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715532
    reference: chr 10
allele count: 2
allele frequency: 1.657028285472833e-5
allele num: 120698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+995C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12034C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12034C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.797C>T
  hgvsp: ENSP00000311825.6:p.Ser266Phe
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12034C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12034C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12034C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39510
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8003
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser266Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

10-126715540-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715540
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715540
    reference: chr 10
allele count: 2
allele frequency: 1.65809981760902e-5
allele num: 120620
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.789C>T
  hgvsp: ENST00000309035.6:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12026C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12026C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12026C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12026C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+987C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12026C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14733
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5635
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8006
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39136
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser263Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

10-126715547-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715547
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715547
    reference: chr 10
allele count: 2
allele frequency: 1.659613310098747e-5
allele num: 120510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12019G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12019G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12019G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12019G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12019G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.782G>A
  hgvsp: ENSP00000311825.6:p.Arg261Gln
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+980G>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14629
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg261Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

10-126715548-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715548
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715548
    reference: chr 10
allele count: 93
allele frequency: 7.716561566544972e-4
allele num: 120520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+979C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12018C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12018C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12018C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12018C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12018C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.781C>T
  hgvsp: ENSP00000311825.6:p.Arg261Trp
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14624
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 30059
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg261Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

10-126715557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715557
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715557
    reference: chr 10
allele count: 5
allele frequency: 4.153720903185073e-5
allele num: 120374
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.772G>A
  hgvsp: ENSP00000311825.6:p.Gly258Arg
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12009G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12009G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12009G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12009G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+970G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12009G>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly258Arg
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

10-126715563-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715563
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715563
    reference: chr 10
allele count: 1
allele frequency: 8.310065150910783e-6
allele num: 120336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12003G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+964G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.766G>A
  hgvsp: ENSP00000311825.6:p.Gly256Ser
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12003G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12003G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12003G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12003G>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29824
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8066
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly256Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

10-126715565-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715565
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715565
    reference: chr 10
allele count: 11
allele frequency: 9.145935878675003e-5
allele num: 120272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12001G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12001G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12001G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.764G>A
  hgvsp: ENSP00000311825.6:p.Arg255His
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+962G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12001G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12001G>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5515
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38334
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg255His
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

10-126715566-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715566
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715566
    reference: chr 10
allele count: 4
allele frequency: 3.32562895957698e-5
allele num: 120278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+12000C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+12000C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.763C>T
  hgvsp: ENSP00000311825.6:p.Arg255Cys
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+12000C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+12000C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+12000C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+961C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5521
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg255Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

10-126715576-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715576
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715576
    reference: chr 10
allele count: 6
allele frequency: 4.995919998667755e-5
allele num: 120098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11990G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.753G>A
  hgvsp: ENST00000309035.6:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11990G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11990G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11990G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+951G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11990G>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8071
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1902
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5492
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly251Gly
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

10-126715577-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715577
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715577
    reference: chr 10
allele count: 5
allele frequency: 4.165278240586471e-5
allele num: 120040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11989G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11989G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11989G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11989G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+950G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11989G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.752G>C
  hgvsp: ENSP00000311825.6:p.Gly251Ala
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly251Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

10-126715580-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715580
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715580
    reference: chr 10
allele count: 2
allele frequency: 1.666611112962901e-5
allele num: 120004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11986C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11986C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.749C>T
  hgvsp: ENSP00000311825.6:p.Pro250Leu
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11986C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11986C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+947C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11986C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37981
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro250Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

10-126715590-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715590
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715590
    reference: chr 10
allele count: 1
allele frequency: 8.347384764353328e-6
allele num: 119798
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+937G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.739G>C
  hgvsp: ENSP00000311825.6:p.Gly247Arg
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11976G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11976G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11976G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11976G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11976G>C
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly247Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

10-126715590-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715590
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715589
    reference: chr 10
allele count: 1
allele frequency: 8.347384764353328e-6
allele num: 119798
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11975delA
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.738delA
  hgvsp: ENSP00000311825.6:p.Val248TrpfsTer6
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+936delA
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11975delA
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11975delA
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11975delA
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11975delA
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5455
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val248TrpfsTer6
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: CT
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

10-126715602-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715602
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715602
    reference: chr 10
allele count: 6
allele frequency: 5.019492362005789e-5
allele num: 119534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11964G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+925G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11964G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11964G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.727G>A
  hgvsp: ENSP00000311825.6:p.Glu243Lys
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11964G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11964G>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5446
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu243Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

10-126715603-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715603
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715603
    reference: chr 10
allele count: 92
allele frequency: 7.697971751790615e-4
allele num: 119512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11963C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11963C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11963C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11963C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.726C>T
  hgvsp: ENST00000309035.6:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+924C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11963C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29545
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14110
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5446
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Pro242Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

10-126715603-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715603
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715603
    reference: chr 10
allele count: 1
allele frequency: 8.367360599772408e-6
allele num: 119512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+924C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11963C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.726C>A
  hgvsp: ENST00000309035.6:c.726C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11963C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11963C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11963C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11963C>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5446
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro242Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

10-126715606-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715606
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715606
    reference: chr 10
allele count: 2
allele frequency: 1.673108132978634e-5
allele num: 119538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+921C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.723C>T
  hgvsp: ENST00000309035.6:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11960C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11960C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11960C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11960C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11960C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5462
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala241Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

10-126715612-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715612
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715613
    reference: chr 10
allele count: 1
allele frequency: 8.367220576668843e-6
allele num: 119514
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11953dupC
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.716dupC
  hgvsp: ENSP00000311825.6:p.Ala240CysfsTer37
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11953dupC
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+914dupC
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11953dupC
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11953dupC
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11953dupC
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5475
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala240CysfsTer37
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-126715620-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715620
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715620
    reference: chr 10
allele count: 1
allele frequency: 8.370302167908262e-6
allele num: 119470
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11946A>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+907A>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.709A>T
  hgvsp: ENSP00000311825.6:p.Ser237Cys
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11946A>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11946A>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11946A>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11946A>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37718
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser237Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

10-126715621-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715621
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715621
    reference: chr 10
allele count: 1
allele frequency: 8.371423309391063e-6
allele num: 119454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11945C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+906C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11945C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11945C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.708C>T
  hgvsp: ENST00000309035.6:c.708C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11945C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11945C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37749
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro236Pro
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

10-126715629-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715629
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715629
    reference: chr 10
allele count: 28658
allele frequency: 2.39827941151857e-1
allele num: 119494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11937G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11937G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11937G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11937G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.700G>A
  hgvsp: ENSP00000311825.6:p.Val234Met
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11937G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+898G>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.25e1
  variant carriers: 790
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 5.25e1
  variant carriers: 394
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 7.75e1
  variant carriers: 1051
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 3.25e1
  variant carriers: 597
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 8.75e1
  variant carriers: 1360
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.25e1
  variant carriers: 614
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 1.25e1
  variant carriers: 313
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.75e1
  variant carriers: 648
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.5e0
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 6.25e1
  variant carriers: 552
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 414
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 488
genotype depth: GenotypeDepth
  all individuals: 13430
  bin: 9.75e1
  variant carriers: 13208
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.75e1
  variant carriers: 379
genotype depth: GenotypeDepth
  all individuals: 17450
  bin: 2.25e1
  variant carriers: 445
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 9.25e1
  variant carriers: 1426
genotype depth: GenotypeDepth
  all individuals: 10665
  bin: 2.75e1
  variant carriers: 588
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 8.25e1
  variant carriers: 1157
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.75e1
  variant carriers: 676
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 6.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.25e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 24917
  bin: 6.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 23
hgvs: p.Val234Met
num of homozygotes: 3567
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

10-126715634-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715634
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715634
    reference: chr 10
allele count: 5
allele frequency: 4.201327619527771e-5
allele num: 119010
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11932T>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.695T>C
  hgvsp: ENSP00000311825.6:p.Leu232Pro
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11932T>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11932T>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11932T>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+893T>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11932T>C
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40548
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu232Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

10-126715635-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715635
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715635
    reference: chr 10
allele count: 1
allele frequency: 8.41226845231085e-6
allele num: 118874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11931C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.694C>T
  hgvsp: ENST00000309035.6:c.694C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11931C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+892C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11931C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11931C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11931C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu232Leu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ

10-126715639-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715639
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715639
    reference: chr 10
allele count: 6
allele frequency: 5.050420026598879e-5
allele num: 118802
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.690G>A
  hgvsp: ENST00000309035.6:c.690G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+888G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11927G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11927G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11927G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11927G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11927G>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40234
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5941
  bin: 9.75e1
  variant carriers: 6
hgvs: p.Thr230Thr
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

10-126715640-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715640
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715640
    reference: chr 10
allele count: 1
allele frequency: 8.416233230655287e-6
allele num: 118818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11926C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11926C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.689C>T
  hgvsp: ENSP00000311825.6:p.Thr230Met
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11926C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11926C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11926C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+887C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40337
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr230Met
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

10-126715640-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715640
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715640
    reference: chr 10
allele count: 1
allele frequency: 8.416233230655287e-6
allele num: 118818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11926C>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11926C>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11926C>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+887C>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11926C>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.689C>G
  hgvsp: ENSP00000311825.6:p.Thr230Arg
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11926C>G
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr230Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-126715642-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715642
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715642
    reference: chr 10
allele count: 4
allele frequency: 3.36898846121452e-5
allele num: 118730
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.687G>A
  hgvsp: ENST00000309035.6:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11924G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11924G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11924G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11924G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11924G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+885G>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40248
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro229Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

10-126715643-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715643
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715643
    reference: chr 10
allele count: 2
allele frequency: 1.685601591207902e-5
allele num: 118652
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.686C>T
  hgvsp: ENSP00000311825.6:p.Pro229Leu
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+884C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11923C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11923C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11923C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11923C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11923C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5727
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40172
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro229Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

10-126715648-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715648
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715648
    reference: chr 10
allele count: 3
allele frequency: 2.529724260055654e-5
allele num: 118590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11918G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11918G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11918G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+879G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.681G>A
  hgvsp: ENST00000309035.6:c.681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11918G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11918G>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5925
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5666
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val227Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD

10-126715662-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715662
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715662
    reference: chr 10
allele count: 5
allele frequency: 4.22654268808115e-5
allele num: 118300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11904C>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.667C>G
  hgvsp: ENSP00000311825.6:p.Pro223Ala
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11904C>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11904C>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11904C>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+865C>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11904C>G
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5492
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro223Ala
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

10-126715663-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715663
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715663
    reference: chr 10
allele count: 1
allele frequency: 8.452942469273554e-6
allele num: 118302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11903C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11903C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.666C>T
  hgvsp: ENST00000309035.6:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+864C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11903C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11903C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11903C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5490
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala222Ala
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

10-126715664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715664
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715664
    reference: chr 10
allele count: 1
allele frequency: 8.456516591685553e-6
allele num: 118252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11902C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.665C>T
  hgvsp: ENSP00000311825.6:p.Ala222Val
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11902C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+863C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11902C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11902C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11902C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5922
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39315
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala222Val
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

10-126715664-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715664
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715664
    reference: chr 10
allele count: 3
allele frequency: 2.536954977505666e-5
allele num: 118252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11902C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.665C>A
  hgvsp: ENSP00000311825.6:p.Ala222Asp
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+863C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11902C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11902C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11902C>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11902C>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5483
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala222Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-126715668-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715668
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715668
    reference: chr 10
allele count: 1
allele frequency: 8.463387386167439e-6
allele num: 118156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11898C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11898C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11898C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+859C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.661C>T
  hgvsp: ENSP00000311825.6:p.Pro221Ser
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11898C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11898C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38970
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro221Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

10-126715674-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715674
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715674
    reference: chr 10
allele count: 1
allele frequency: 8.465393471488555e-6
allele num: 118128
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11892A>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11892A>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11892A>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11892A>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.655A>G
  hgvsp: ENSP00000311825.6:p.Ile219Val
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+853A>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11892A>G
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39021
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile219Val
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

10-126715676-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715676
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715676
    reference: chr 10
allele count: 1
allele frequency: 8.469265037180074e-6
allele num: 118074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11890C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11890C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11890C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+851C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11890C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.653C>T
  hgvsp: ENSP00000311825.6:p.Pro218Leu
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11890C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5911
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro218Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

10-126715678-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715678
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715678
    reference: chr 10
allele count: 11
allele frequency: 9.316033740980385e-5
allele num: 118076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11888A>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11888A>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11888A>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11888A>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11888A>G
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.651A>G
  hgvsp: ENST00000309035.6:c.651A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+849A>G
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5398
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38834
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg217Arg
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

10-126715683-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715683
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715683
    reference: chr 10
allele count: 228
allele frequency: 1.936207072251095e-3
allele num: 117756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11883G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11883G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11883G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.646G>A
  hgvsp: ENSP00000311825.6:p.Glu216Lys
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11883G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11883G>A
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+844G>A
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20568
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 20809
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6081
  bin: 9.75e1
  variant carriers: 225
hgvs: p.Glu216Lys
num of homozygotes: 4
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

10-126715683-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715683
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715683
    reference: chr 10
allele count: 2
allele frequency: 1.69842725636061e-5
allele num: 117756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11883G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.646G>C
  hgvsp: ENSP00000311825.6:p.Glu216Gln
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+844G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11883G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11883G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11883G>C
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11883G>C
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu216Gln
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

10-126715684-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 126715684
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 126715684
    reference: chr 10
allele count: 3
allele frequency: 2.546213780108978e-5
allele num: 117822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000434630
  ensembl transcript: ENST00000531469
  gene symbol: CTBP2
  hgvsc: ENST00000531469.1:c.58+11882C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000338615
  ensembl transcript: ENST00000337195
  gene symbol: CTBP2
  hgvsc: ENST00000337195.5:c.58+11882C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000460976
  gene symbol: CTBP2
  hgvsc: ENST00000460976.1:n.448+11882C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl transcript: ENST00000493552
  gene symbol: CTBP2
  hgvsc: ENST00000493552.1:n.71+843C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000410474
  ensembl transcript: ENST00000411419
  gene symbol: CTBP2
  hgvsc: ENST00000411419.2:c.58+11882C>T
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000311825
  ensembl transcript: ENST00000309035
  gene symbol: CTBP2
  hgvsc: ENST00000309035.6:c.645C>T
  hgvsp: ENST00000309035.6:c.645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2495
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175029
  ensembl protein: ENSP00000436285
  ensembl transcript: ENST00000494626
  gene symbol: CTBP2
  hgvsc: ENST00000494626.2:c.58+11882C>T
  variant of: http://identifiers.org/hgnc/2495
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20885
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser215Ser
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 2577
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516852228255923e-5
allele num: 65926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.704735376044568e-5
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.179e1

VQSLOD
type: SiteQuality
SIO_000300: -3.041e0

DP
type: SiteQuality
SIO_000300: 1.49291e6

FS
type: SiteQuality
SIO_000300: 2.1184e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.191e0

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

GenotypeQuality
all individuals: 360
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.517911353976928e-4
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65954
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.115e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

DP
type: SiteQuality
SIO_000300: 1.493624e6

FS
type: SiteQuality
SIO_000300: 2.021e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 7.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.157e0

GenotypeQuality
all individuals: 2588
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 1.868285847734703e-3
allele num: 8564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65956
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.494088e6

VQSLOD
type: SiteQuality
SIO_000300: 4.9e0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.454e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

GenotypeQuality
all individuals: 2636
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.046462955211386e-4
allele num: 9556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65952
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.229e0

DP
type: SiteQuality
SIO_000300: 1.497519e6

MQ
type: SiteQuality
SIO_000300: 5.892e1

VQSLOD
type: SiteQuality
SIO_000300: 6.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

GenotypeQuality
all individuals: 1399
bin: 7.75e1
variant carriers: 101

European (Non-Finnish)
type: Population
allele count: 12542
allele frequency: 1.900879054258866e-1
allele num: 65980
num of homozygotes: 1160

African
type: Population
allele count: 1694
allele frequency: 1.772337309060473e-1
allele num: 9558
num of homozygotes: 139

East Asian
type: Population
allele count: 15
allele frequency: 1.750700280112045e-3
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 1087
allele frequency: 9.462047353760446e-2
allele num: 11488
num of homozygotes: 52

South Asian
type: Population
allele count: 3415
allele frequency: 2.074474547442595e-1
allele num: 16462
num of homozygotes: 400

European (Finnish)
type: Population
allele count: 830
allele frequency: 1.262933657942787e-1
allele num: 6572
num of homozygotes: 58

Other
type: Population
allele count: 146
allele frequency: 1.662870159453303e-1
allele num: 878
num of homozygotes: 13

BaseQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.48e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.86e-2

DP
type: SiteQuality
SIO_000300: 1.860496e6

GenotypeQuality
all individuals: 2862
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.099e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.138e0

VQSLOD
type: SiteQuality
SIO_000300: -1.932e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-1

FS
type: SiteQuality
SIO_000300: 4.297e0

DP
type: SiteQuality
SIO_000300: 1.715084e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 2.126e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 1055
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514784294716432e-5
allele num: 66016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.455e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e0

VQSLOD
type: SiteQuality
SIO_000300: -2.275e0

QD
type: SiteQuality
SIO_000300: 5.29e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.63e0

DP
type: SiteQuality
SIO_000300: 1.714073e6

GenotypeQuality
all individuals: 34370
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66028
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.070908207867897e-4
allele num: 16472
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.273e0

VQSLOD
type: SiteQuality
SIO_000300: 3.23e0

MQRankSum
type: SiteQuality
SIO_000300: -6.16e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

FS
type: SiteQuality
SIO_000300: 1.774e0

DP
type: SiteQuality
SIO_000300: 1.715217e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-2

QD
type: SiteQuality
SIO_000300: 1.175e1

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.046462955211386e-4
allele num: 9556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66046
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.434e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

DP
type: SiteQuality
SIO_000300: 1.713757e6

VQSLOD
type: SiteQuality
SIO_000300: 5.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.507e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.3e1

GenotypeQuality
all individuals: 1885
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213886865744113e-4
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66022
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

DP
type: SiteQuality
SIO_000300: 1.713634e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 3.474e0

VQSLOD
type: SiteQuality
SIO_000300: -2.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 9.51e0

GenotypeQuality
all individuals: 5707
bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.184975936388366e-4
allele num: 9558
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.976e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

DP
type: SiteQuality
SIO_000300: 1.714019e6

QD
type: SiteQuality
SIO_000300: 1.337e1

GenotypeQuality
all individuals: 2758
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.046462955211386e-4
allele num: 9556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.428658166363084e-4
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.030762236702531e-5
allele num: 65990
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.959e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

QD
type: SiteQuality
SIO_000300: 1.181e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.84e-1

DP
type: SiteQuality
SIO_000300: 1.713666e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

GenotypeQuality
all individuals: 968
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.713502398903359e-4
allele num: 5836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.104728236853734e-4
allele num: 63364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.84016973125884e-5
allele num: 11312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8980
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.209e0

FS
type: SiteQuality
SIO_000300: 1.49318e2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e0

VQSLOD
type: SiteQuality
SIO_000300: -1.047e2

MQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.019e0

QD
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 1.75892e6

GenotypeQuality
all individuals: 1134
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63364
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090133982947625e-5
allele num: 16420
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.49318e2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.019e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.209e0

QD
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.047e2

MQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

DP
type: SiteQuality
SIO_000300: 1.75892e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
all individuals: 33273
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.041232819658476e-4
allele num: 9604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.08e-1

DP
type: SiteQuality
SIO_000300: 1.7852e6

FS
type: SiteQuality
SIO_000300: 6.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.119e1

GenotypeQuality
all individuals: 7674
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510482750286992e-5
allele num: 66204
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

FS
type: SiteQuality
SIO_000300: 3.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.57e-1

DP
type: SiteQuality
SIO_000300: 1.785851e6

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66240
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
SIO_000300: 1.787142e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 1.494e1

VQSLOD
type: SiteQuality
SIO_000300: -8.269e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.706e0

GenotypeQuality
all individuals: 2920
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.686587908269631e-5
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.932e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

QD
type: SiteQuality
SIO_000300: 6.6e0

VQSLOD
type: SiteQuality
SIO_000300: -2.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

DP
type: SiteQuality
SIO_000300: 1.788369e6

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.605071205279611e-4
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.31e-1

FS
type: SiteQuality
SIO_000300: 3.04e0

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.153e0

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 1.790114e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e-1

GenotypeQuality
all individuals: 33640
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507522537461935e-5
allele num: 66334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

DP
type: SiteQuality
SIO_000300: 1.792655e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.62e-1

FS
type: SiteQuality
SIO_000300: 1.029e0

VQSLOD
type: SiteQuality
SIO_000300: 7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.701e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.640334910811795e-4
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

FS
type: SiteQuality
SIO_000300: 1.712e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.395e1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 1.793991e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66148
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.173e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.81e-1

FS
type: SiteQuality
SIO_000300: 1.0118e1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.43e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.429e0

QD
type: SiteQuality
SIO_000300: 2.794e1

DP
type: SiteQuality
SIO_000300: 1.786451e6

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39563
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7866
bin: 9.75e1
variant carriers: 56

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 58
allele frequency: 3.513022410660206e-3
allele num: 16510
num of homozygotes: 2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

QD
type: SiteQuality
SIO_000300: 1.366e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.07e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.66e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e-1

DP
type: SiteQuality
SIO_000300: 1.790748e6

VQSLOD
type: SiteQuality
SIO_000300: 4.57e0

GenotypeQuality
all individuals: 5654
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1904
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7819
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.532680627322999e-5
allele num: 66186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.593e0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 3.818e0

QD
type: SiteQuality
SIO_000300: 1.114e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

DP
type: SiteQuality
SIO_000300: 1.788213e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39641
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5659
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66178
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.265e0

QD
type: SiteQuality
SIO_000300: 1.543e1

VQSLOD
type: SiteQuality
SIO_000300: 4.26e-1

FS
type: SiteQuality
SIO_000300: 8.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

DP
type: SiteQuality
SIO_000300: 1.788405e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39602
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020874241005347e-5
allele num: 66206
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

QD
type: SiteQuality
SIO_000300: 1.112e1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.7892e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.371e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66196
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162520344106022e-4
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.478e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

FS
type: SiteQuality
SIO_000300: 3.314e0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.58e-1

DP
type: SiteQuality
SIO_000300: 1.789509e6

GenotypeQuality
all individuals: 1442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7823
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1911
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.58e-1

FS
type: SiteQuality
SIO_000300: 3.314e0

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.789509e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

QD
type: SiteQuality
SIO_000300: 1.478e1

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39717
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019961948479449e-5
allele num: 66226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.592e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

MQ
type: SiteQuality
SIO_000300: 5.985e1

FS
type: SiteQuality
SIO_000300: 1.142e0

QD
type: SiteQuality
SIO_000300: 1.3e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.789687e6

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507295309296997e-5
allele num: 66344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

FS
type: SiteQuality
SIO_000300: 1.149e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

QD
type: SiteQuality
SIO_000300: 1.48e1

DP
type: SiteQuality
SIO_000300: 1.794278e6

GenotypeQuality
all individuals: 2095
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66350
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.43e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: -6.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.909999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.796154e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

GenotypeQuality
all individuals: 39529
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5629
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2017
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8132
bin: 9.75e1
variant carriers: 344

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.348214285714286e-3
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019779556092405e-5
allele num: 66230
num of homozygotes: 0

East Asian
type: Population
allele count: 222
allele frequency: 2.578996282527881e-2
allele num: 8608
num of homozygotes: 5

African
type: Population
allele count: 15
allele frequency: 1.453206742879287e-3
allele num: 10322
num of homozygotes: 0

South Asian
type: Population
allele count: 106
allele frequency: 6.420351302241066e-3
allele num: 16510
num of homozygotes: 1

Latino
type: Population
allele count: 3
allele frequency: 2.594706798131811e-4
allele num: 11562
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.272e1

VQSLOD
type: SiteQuality
SIO_000300: 6.22e0

DP
type: SiteQuality
SIO_000300: 1.81033e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.19e-2

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8001
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66232
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.162e1

FS
type: SiteQuality
SIO_000300: 8.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.977e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 1.798554e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5650
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66212
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.324500232450023e-4
allele num: 8604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 1.797694e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.973e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.31e-1

FS
type: SiteQuality
SIO_000300: 1.951e0

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.405e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.03e-1

GenotypeQuality
all individuals: 1915
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511441613010489e-5
allele num: 66162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.402e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 4.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 1.794952e6

QD
type: SiteQuality
SIO_000300: 1.429e1

VQSLOD
type: SiteQuality
SIO_000300: 6.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.99e-1

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8008
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5547
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.950078003120125e-4
allele num: 10256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.426e0

QD
type: SiteQuality
SIO_000300: 1.207e1

FS
type: SiteQuality
SIO_000300: 5.066e0

DP
type: SiteQuality
SIO_000300: 1.79244e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
all individuals: 5540
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8089
bin: 9.75e1
variant carriers: 94

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.539264639128461e-5
allele num: 66090
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.325259515570934e-4
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 85
allele frequency: 8.28783151326053e-3
allele num: 10256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

FS
type: SiteQuality
SIO_000300: 1.103e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.333e1

DP
type: SiteQuality
SIO_000300: 1.796816e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8065
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 38517
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.059504332545598e-5
allele num: 66012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.85e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 1.792118e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

FS
type: SiteQuality
SIO_000300: 4.918e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 1422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38517
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1898
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515013786625458e-5
allele num: 66006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 1.188e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.62e0

VQSLOD
type: SiteQuality
SIO_000300: 2.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.774e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.392e0

DP
type: SiteQuality
SIO_000300: 1.789723e6

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8073
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 665
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.061120543293718e-4
allele num: 65968
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

FS
type: SiteQuality
SIO_000300: 3.209e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

DP
type: SiteQuality
SIO_000300: 1.789425e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
SIO_000300: 1.214e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 241
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8070
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2012
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38445
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515748628247491e-5
allele num: 65974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.789255e6

FS
type: SiteQuality
SIO_000300: 2.477e0

QD
type: SiteQuality
SIO_000300: 1.15e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: 7.49e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-1

GenotypeQuality
all individuals: 1159
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38115
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.193006750908776e-4
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.785002e6

QD
type: SiteQuality
SIO_000300: 1.319e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.57e-1

GenotypeQuality
all individuals: 5477
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8075
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37928
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.593014426727411e-5
allele num: 65850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.783973e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.278e0

FS
type: SiteQuality
SIO_000300: 5.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.81e-1

QD
type: SiteQuality
SIO_000300: 1.215e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.41e-1

GenotypeQuality
all individuals: 321
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8078
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 661
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5464
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.038497766704142e-5
allele num: 65822
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.565e1

DP
type: SiteQuality
SIO_000300: 1.783568e6

FS
type: SiteQuality
SIO_000300: 2.427e0

VQSLOD
type: SiteQuality
SIO_000300: -3.18e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.733e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
all individuals: 128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37735
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8080
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1896
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5455
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.636e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.812e0

MQRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQ
type: SiteQuality
SIO_000300: 6.113e1

QD
type: SiteQuality
SIO_000300: 1.405e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.81e-1

DP
type: SiteQuality
SIO_000300: 1.780918e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1896
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37735
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8080
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.780918e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.812e0

FS
type: SiteQuality
SIO_000300: 3.636e0

MQRankSum
type: SiteQuality
SIO_000300: 2.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

MQ
type: SiteQuality
SIO_000300: 6.113e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

QD
type: SiteQuality
SIO_000300: 1.405e1

GenotypeQuality
all individuals: 37576
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8084
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022076860179886e-4
allele num: 9784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.57205559619605e-5
allele num: 65616
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.21e0

DP
type: SiteQuality
SIO_000300: 1.77951e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.303e1

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8117
bin: 9.75e1
variant carriers: 92

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37636
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 89
allele frequency: 9.096484055600981e-3
allele num: 9784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524390243902439e-5
allele num: 65600
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.91e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.78e0

QD
type: SiteQuality
SIO_000300: 1.409e1

DP
type: SiteQuality
SIO_000300: 1.782461e6

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37636
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8117
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524390243902439e-5
allele num: 65600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.78e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.409e1

DP
type: SiteQuality
SIO_000300: 1.782461e6

GenotypeQuality
all individuals: 8060
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37717
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65626
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.044571662236761e-4
allele num: 9782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.84e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e0

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.75e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

FS
type: SiteQuality
SIO_000300: 1.0818e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 1.778571e6

GenotypeQuality
all individuals: 156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37773
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8060
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1895
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524250830716703e-5
allele num: 65606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.383e1

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.324e0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 1.778266e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

GenotypeQuality
all individuals: 1886
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8061
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: -2.164e0

FS
type: SiteQuality
SIO_000300: 7.58e-1

DP
type: SiteQuality
SIO_000300: 1.777642e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.014e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

QD
type: SiteQuality
SIO_000300: 2.299e1

GenotypeQuality
all individuals: 1314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8063
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2015
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524808636516117e-5
allele num: 65582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
SIO_000300: 2.564e1

DP
type: SiteQuality
SIO_000300: 1.777767e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.343e0

MQRankSum
type: SiteQuality
SIO_000300: -1.08e-1

FS
type: SiteQuality
SIO_000300: 1.5494e1

VQSLOD
type: SiteQuality
SIO_000300: -1.464e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.6e-2

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 227
bin: 3.25e1
variant carriers: 19

GenotypeQuality
all individuals: 1026
bin: 2.25e1
variant carriers: 15

GenotypeQuality
all individuals: 28070
bin: 9.75e1
variant carriers: 24795

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 40

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 48

GenotypeQuality
all individuals: 792
bin: 7.75e1
variant carriers: 53

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 17

GenotypeQuality
all individuals: 143
bin: 3.75e1
variant carriers: 18

GenotypeQuality
all individuals: 855
bin: 7.25e1
variant carriers: 19

European (Non-Finnish)
type: Population
allele count: 17365
allele frequency: 2.644040440952555e-1
allele num: 65676
num of homozygotes: 2324

Latino
type: Population
allele count: 3190
allele frequency: 2.762861597089901e-1
allele num: 11546
num of homozygotes: 409

Other
type: Population
allele count: 221
allele frequency: 2.472035794183445e-1
allele num: 894
num of homozygotes: 24

African
type: Population
allele count: 1235
allele frequency: 1.257125407166124e-1
allele num: 9824
num of homozygotes: 64

European (Finnish)
type: Population
allele count: 1334
allele frequency: 2.023665048543689e-1
allele num: 6592
num of homozygotes: 125

East Asian
type: Population
allele count: 2331
allele frequency: 2.717416647237118e-1
allele num: 8578
num of homozygotes: 348

South Asian
type: Population
allele count: 2982
allele frequency: 1.820068359375e-1
allele num: 16384
num of homozygotes: 273

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

QD
type: SiteQuality
SIO_000300: 1.515e1

VQSLOD
type: SiteQuality
SIO_000300: 6.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.576e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 3.378971e6

GenotypeQuality
all individuals: 266
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5872
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5947
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 317
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.077301821762679e-4
allele num: 16248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

FS
type: SiteQuality
SIO_000300: 5.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

DP
type: SiteQuality
SIO_000300: 1.789935e6

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5943
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65274
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.077e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.508e0

DP
type: SiteQuality
SIO_000300: 1.786491e6

QD
type: SiteQuality
SIO_000300: 1.495e1

FS
type: SiteQuality
SIO_000300: 4.437e0

VQSLOD
type: SiteQuality
SIO_000300: 2.93e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5768
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021867974657674e-4
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16180
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.465603881476347e-4
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533083951677194e-5
allele num: 65228
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

DP
type: SiteQuality
SIO_000300: 1.784768e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.894e1

FS
type: SiteQuality
SIO_000300: 2.446e0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

GenotypeQuality
all individuals: 110
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5940
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53275497378989e-5
allele num: 65242
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.129e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e0

FS
type: SiteQuality
SIO_000300: 8.824999999999999e0

DP
type: SiteQuality
SIO_000300: 1.783785e6

QD
type: SiteQuality
SIO_000300: 1.29e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

GenotypeQuality
all individuals: 1553
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40337
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165501165501166e-4
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16180
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.824999999999999e0

QD
type: SiteQuality
SIO_000300: 1.29e1

VQSLOD
type: SiteQuality
SIO_000300: -1.129e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.783785e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

GenotypeQuality
all individuals: 315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5937
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.196554715578138e-5
allele num: 16138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.601368140126998e-5
allele num: 65198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

DP
type: SiteQuality
SIO_000300: 1.782379e6

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.948e0

QD
type: SiteQuality
SIO_000300: 1.424e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5932
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535060788407221e-5
allele num: 65144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16120
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 1.78047e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.448e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

QD
type: SiteQuality
SIO_000300: 1.149e1

FS
type: SiteQuality
SIO_000300: 9.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2163
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40117
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.607021100156639e-5
allele num: 65118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16062
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.475e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.776963e6

MQRankSum
type: SiteQuality
SIO_000300: 7.65e-1

QD
type: SiteQuality
SIO_000300: 1.079e1

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39440
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5923
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.700126282071025e-5
allele num: 64934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.086e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

DP
type: SiteQuality
SIO_000300: 1.765375e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.02e0

FS
type: SiteQuality
SIO_000300: 2.477e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.167e0

GenotypeQuality
all individuals: 435
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39380
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5920
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2555
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539740707664829e-5
allele num: 64946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.957e0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.19e0

QD
type: SiteQuality
SIO_000300: 2.803e1

DP
type: SiteQuality
SIO_000300: 1.764361e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.45e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
all individuals: 309
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1512
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5483
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540357362908195e-5
allele num: 64920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 1.763905e6

FS
type: SiteQuality
SIO_000300: 4.178e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.274e0

QD
type: SiteQuality
SIO_000300: 1.143e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

GenotypeQuality
all individuals: 155
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39315
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5922
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.259445843828715e-4
allele num: 15880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64920
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 4.178e0

MQRankSum
type: SiteQuality
SIO_000300: 5.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.274e0

DP
type: SiteQuality
SIO_000300: 1.763905e6

QD
type: SiteQuality
SIO_000300: 1.143e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2646
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5916
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540784567501772e-5
allele num: 64902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15794
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.971e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.909e1

FS
type: SiteQuality
SIO_000300: 2.325e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.72e-1

QD
type: SiteQuality
SIO_000300: 1.496e1

DP
type: SiteQuality
SIO_000300: 1.760042e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.75e-1

GenotypeQuality
all individuals: 760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2731
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5910
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541307028360049e-5
allele num: 64880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

QD
type: SiteQuality
SIO_000300: 1.407e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 3.76e0

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

DP
type: SiteQuality
SIO_000300: 1.757768e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.54e-1

GenotypeQuality
all individuals: 861
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38945
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2738
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.371861858034918e-5
allele num: 15694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.598e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.756921e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.742e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.57e-1

GenotypeQuality
all individuals: 2740
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5911
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 874
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.695751372017019e-4
allele num: 64868
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.318e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

FS
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

DP
type: SiteQuality
SIO_000300: 1.756065e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

GenotypeQuality
all individuals: 276
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1498
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.586652871184687e-4
allele num: 15464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.466204506065858e-4
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.235330450895614e-4
allele num: 64760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 211
allele frequency: 2.121455861652926e-2
allele num: 9946
num of homozygotes: 4

Other
type: Population
allele count: 1
allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

DP
type: SiteQuality
SIO_000300: 1.761909e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.422e1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.03e-2

GenotypeQuality
all individuals: 5256
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37845
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2652
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6081
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 745
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.088326127239036e-5
allele num: 64760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15464
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

DP
type: SiteQuality
SIO_000300: 1.761909e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.03e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 6.4e0

QD
type: SiteQuality
SIO_000300: 1.422e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5878
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 930
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38192
bin: 6.25e1
variant carriers: 0