11-124761596-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761596
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761596
    reference: chr 11
allele count: 207
allele frequency: 1.716360983051972e-3
allele num: 120604
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsc: ENST00000306534.3:c.1650G>A
  hgvsp: ENST00000306534.3:c.1650G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  hgvsc: ENST00000532216.1:n.239G>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsc: ENST00000533054.1:c.1215G>A
  hgvsp: ENST00000533054.1:c.1215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
  hgvsc: ENST00000524433.1:c.18+109C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  hgvsc: ENST00000534407.1:n.1326G>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  hgvsc: ENST00000525182.1:n.577G>A
  variant of: http://identifiers.org/hgnc/17985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 10397
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 15379
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 29972
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 9.75e1
  variant carriers: 202
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40698
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala550Ala
num of homozygotes: 4
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

11-124761599-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761599
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761599
    reference: chr 11
allele count: 1
allele frequency: 8.288712431410904e-6
allele num: 120646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  hgvsc: ENST00000534407.1:n.1323G>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsc: ENST00000306534.3:c.1647G>A
  hgvsp: ENST00000306534.3:c.1647G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
  hgvsc: ENST00000524433.1:c.18+112C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsc: ENST00000533054.1:c.1212G>A
  hgvsp: ENST00000533054.1:c.1212G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  hgvsc: ENST00000525182.1:n.574G>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  hgvsc: ENST00000532216.1:n.236G>A
  variant of: http://identifiers.org/hgnc/17985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9880
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41257
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2629
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly549Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

11-124761600-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761600
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761600
    reference: chr 11
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  hgvsc: ENST00000525182.1:n.573G>C
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  hgvsc: ENST00000532216.1:n.235G>C
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsc: ENST00000533054.1:c.1211G>C
  hgvsp: ENSP00000437129.1:p.Gly404Ala
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsc: ENST00000306534.3:c.1646G>C
  hgvsp: ENSP00000304945.3:p.Gly549Ala
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
  hgvsc: ENST00000524433.1:c.18+113C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  hgvsc: ENST00000534407.1:n.1322G>C
  variant of: http://identifiers.org/hgnc/17985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9885
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly549Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

11-124761606-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761606
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761606
    reference: chr 11
allele count: 2
allele frequency: 1.657989853102099e-5
allele num: 120628
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsc: ENST00000306534.3:c.1640G>A
  hgvsp: ENSP00000304945.3:p.Arg547Gln
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
  hgvsc: ENST00000524433.1:c.18+119C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  hgvsc: ENST00000532216.1:n.229G>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsc: ENST00000533054.1:c.1205G>A
  hgvsp: ENSP00000437129.1:p.Arg402Gln
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  hgvsc: ENST00000525182.1:n.567G>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  hgvsc: ENST00000534407.1:n.1316G>A
  variant of: http://identifiers.org/hgnc/17985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10453
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41254
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg547Gln
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

11-124761607-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761607
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761607
    reference: chr 11
allele count: 124
allele frequency: 1.028021886917592e-3
allele num: 120620
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsc: ENST00000306534.3:c.1639C>T
  hgvsp: ENSP00000304945.3:p.Arg547Trp
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  hgvsc: ENST00000534407.1:n.1315C>T
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  hgvsc: ENST00000525182.1:n.566C>T
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  hgvsc: ENST00000532216.1:n.228C>T
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsc: ENST00000533054.1:c.1204C>T
  hgvsp: ENSP00000437129.1:p.Arg402Trp
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
  hgvsc: ENST00000524433.1:c.18+120G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 30225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41203
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg547Trp
num of homozygotes: 2
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

11-124761607-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761607
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761607
    reference: chr 11
allele count: 1
allele frequency: 8.290499088045101e-6
allele num: 120620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  hgvsc: ENST00000525182.1:n.566C>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  hgvsc: ENST00000534407.1:n.1315C>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  hgvsc: ENST00000532216.1:n.228C>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsc: ENST00000533054.1:c.1204C>A
  hgvsp: ENST00000533054.1:c.1204C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsc: ENST00000306534.3:c.1639C>A
  hgvsp: ENST00000306534.3:c.1639C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
  hgvsc: ENST00000524433.1:c.18+120G>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9870
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41203
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg547Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

11-124761609-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761609
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761609
    reference: chr 11
allele count: 1
allele frequency: 8.298341991270144e-6
allele num: 120506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  hgvsc: ENST00000525182.1:n.564G>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  hgvsc: ENST00000534407.1:n.1313G>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsc: ENST00000533054.1:c.1202G>A
  hgvsp: ENSP00000437129.1:p.Ser401Asn
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsc: ENST00000306534.3:c.1637G>A
  hgvsp: ENSP00000304945.3:p.Ser546Asn
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  hgvsc: ENST00000532216.1:n.226G>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
  hgvsc: ENST00000524433.1:c.18+122C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser546Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

11-124761613-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761613
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761613
    reference: chr 11
allele count: 1
allele frequency: 8.292699107705576e-6
allele num: 120588
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
  hgvsc: ENST00000524433.1:c.18+126T>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsc: ENST00000306534.3:c.1633A>C
  hgvsp: ENSP00000304945.3:p.Ser545Arg
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  hgvsc: ENST00000525182.1:n.560A>C
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsc: ENST00000533054.1:c.1198A>C
  hgvsp: ENSP00000437129.1:p.Ser400Arg
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  hgvsc: ENST00000532216.1:n.222A>C
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  hgvsc: ENST00000534407.1:n.1309A>C
  variant of: http://identifiers.org/hgnc/17985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser545Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-124761616-G-GGCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761616
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761619
    reference: chr 11
allele count: 3
allele frequency: 2.487809732311673e-5
allele num: 120588
alternate allele: GGCT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsc: ENST00000533054.1:c.1192_1194dupAGC
  hgvsp: ENSP00000437129.1:p.Ser398dup
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
  hgvsc: ENST00000524433.1:c.18+142_18+144dupGCT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  hgvsc: ENST00000525182.1:n.554_556dupAGC
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsc: ENST00000306534.3:c.1627_1629dupAGC
  hgvsp: ENSP00000304945.3:p.Ser543dup
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  hgvsc: ENST00000532216.1:n.216_218dupAGC
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  hgvsc: ENST00000534407.1:n.1303_1305dupAGC
  variant of: http://identifiers.org/hgnc/17985
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10463
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser543dup
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-124761616-G-GGCTGCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761616
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761622
    reference: chr 11
allele count: 1
allele frequency: 8.292699107705576e-6
allele num: 120588
alternate allele: GGCTGCT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  hgvsc: ENST00000534407.1:n.1300_1305dupAGCAGC
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsc: ENST00000306534.3:c.1624_1629dupAGCAGC
  hgvsp: ENSP00000304945.3:p.Ser542_Ser543dup
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  hgvsc: ENST00000532216.1:n.213_218dupAGCAGC
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsc: ENST00000533054.1:c.1189_1194dupAGCAGC
  hgvsp: ENSP00000437129.1:p.Ser397_Ser398dup
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
  hgvsc: ENST00000524433.1:c.18+139_18+144dupGCTGCT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  hgvsc: ENST00000525182.1:n.551_556dupAGCAGC
  variant of: http://identifiers.org/hgnc/17985
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41219
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser542_Ser543dup
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

11-124761616-GGCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761616
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761613
    reference: chr 11
allele count: 1
allele frequency: 8.292699107705576e-6
allele num: 120588
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsc: ENST00000306534.3:c.1627_1629delAGC
  hgvsp: ENSP00000304945.3:p.Ser543del
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  hgvsc: ENST00000532216.1:n.216_218delAGC
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  hgvsc: ENST00000525182.1:n.554_556delAGC
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
  hgvsc: ENST00000524433.1:c.18+142_18+144delGCT
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsc: ENST00000533054.1:c.1192_1194delAGC
  hgvsp: ENSP00000437129.1:p.Ser398del
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  hgvsc: ENST00000534407.1:n.1303_1305delAGC
  variant of: http://identifiers.org/hgnc/17985
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser543del
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: GGCT
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

11-124761618-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761618
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761618
    reference: chr 11
allele count: 1
allele frequency: 8.29462508294625e-6
allele num: 120560
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
  hgvsc: ENST00000524433.1:c.18+131C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsc: ENST00000533054.1:c.1193G>A
  hgvsp: ENSP00000437129.1:p.Ser398Asn
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  hgvsc: ENST00000532216.1:n.217G>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  hgvsc: ENST00000525182.1:n.555G>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  hgvsc: ENST00000534407.1:n.1304G>A
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsc: ENST00000306534.3:c.1628G>A
  hgvsp: ENSP00000304945.3:p.Ser543Asn
  variant of: http://identifiers.org/hgnc/17985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser543Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

11-124761620-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761620
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761620
    reference: chr 11
allele count: 3
allele frequency: 2.488057324840764e-5
allele num: 120576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  hgvsc: ENST00000534407.1:n.1302C>T
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  hgvsc: ENST00000525182.1:n.553C>T
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  hgvsc: ENST00000532216.1:n.215C>T
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsc: ENST00000533054.1:c.1191C>T
  hgvsp: ENST00000533054.1:c.1191C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsc: ENST00000306534.3:c.1626C>T
  hgvsp: ENST00000306534.3:c.1626C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
  hgvsc: ENST00000524433.1:c.18+133G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9725
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Ser542Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

11-124761628-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761628
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761628
    reference: chr 11
allele count: 1
allele frequency: 8.288712431410904e-6
allele num: 120646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsc: ENST00000533054.1:c.1183A>G
  hgvsp: ENSP00000437129.1:p.Ser395Gly
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  hgvsc: ENST00000532216.1:n.207A>G
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
  hgvsc: ENST00000524433.1:c.18+141T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  hgvsc: ENST00000534407.1:n.1294A>G
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  hgvsc: ENST00000525182.1:n.545A>G
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsc: ENST00000306534.3:c.1618A>G
  hgvsp: ENSP00000304945.3:p.Ser540Gly
  variant of: http://identifiers.org/hgnc/17985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser540Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

11-124761631-TCAGGTCCCGAGAGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 124761631
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 124761617
    reference: chr 11
allele count: 7
allele frequency: 5.805852299117511e-5
allele num: 120568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000437129
  ensembl transcript: ENST00000533054
  gene symbol: ROBO4
  hgvsp: ENSP00000437129.1:p.Gly389GlufsTer50
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000525182
  gene symbol: ROBO4
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000534407
  gene symbol: ROBO4
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000154133
  ensembl transcript: ENST00000532216
  gene symbol: ROBO4
  variant of: http://identifiers.org/hgnc/17985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254943
  ensembl protein: ENSP00000432098
  ensembl transcript: ENST00000524433
  gene symbol: RP11-664I21.6
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000154133
  ensembl protein: ENSP00000304945
  ensembl transcript: ENST00000306534
  gene symbol: ROBO4
  hgvsp: ENSP00000304945.3:p.Gly534GlufsTer50
  variant of: http://identifiers.org/hgnc/17985
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 15623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30312
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9755
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 9.75e1
  variant carriers: 7
hgvs: p.Gly534GlufsTer50
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: TCAGGTCCCGAGAGC
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

14-90459864-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90459864
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90459864
    reference: chr 14
allele count: 19
allele frequency: 1.80484839273501e-4
allele num: 105272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*864+37T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*726+37T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.462+37T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1541+37T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.824+37T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1541+37T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1100+37T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1541+37T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1541+37T>C
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12072
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14638
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/14-90459867-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90459867
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90459867
    reference: chr 14
allele count: 1
allele frequency: 9.566631589017507e-6
allele num: 104530
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1100+40A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*864+40A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*726+40A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.462+40A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.824+40A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1541+40A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1541+40A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1541+40A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1541+40A>C
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20045
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7405
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5992
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

14-90459873-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90459873
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90459873
    reference: chr 14
allele count: 1
allele frequency: 1.004419445560466e-5
allele num: 99560
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.462+46T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*864+46T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1541+46T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1541+46T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.824+46T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1100+46T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1541+46T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*726+46T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1541+46T>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7370
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8678
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP

14-90459879-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90459879
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90459879
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 97612
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*726+52A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.462+52A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1541+52A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*864+52A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1541+52A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1100+52A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1541+52A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1541+52A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.824+52A>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9239
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6489
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

http://identifiers.org/exac.variant/14-90485615-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485615
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485615
    reference: chr 14
allele count: 1
allele frequency: 8.876422446697082e-6
allele num: 112658
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1542-45A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1542-45A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*727-45A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.825-45A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1542-45A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*865-45A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1542-45A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1101-45A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.463-45A>C
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14741
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2487
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3060
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

14-90485616-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485616
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485616
    reference: chr 14
allele count: 2
allele frequency: 1.774937877174299e-5
allele num: 112680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.463-44G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1542-44G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*865-44G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1542-44G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1542-44G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.825-44G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1101-44G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*727-44G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1542-44G>C
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13522
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15326
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5621
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6231
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

14-90485625-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485625
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485625
    reference: chr 14
allele count: 2
allele frequency: 1.763481818502451e-5
allele num: 113412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1542-35C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.825-35C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*865-35C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1542-35C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*727-35C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.463-35C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1542-35C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1542-35C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1101-35C>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8179
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

14-90485627-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485627
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485627
    reference: chr 14
allele count: 1
allele frequency: 8.79600309619309e-6
allele num: 113688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*727-33G>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1101-33G>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1542-33G>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1542-33G>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.825-33G>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*865-33G>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1542-33G>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1542-33G>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.463-33G>T
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5083
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24285
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

14-90485634-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485634
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485634
    reference: chr 14
allele count: 271
allele frequency: 2.357751870541152e-3
allele num: 114940
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1542-26C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*727-26C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1542-26C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*865-26C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1542-26C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.463-26C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.825-26C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1542-26C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1101-26C>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6639
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 9.75e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8539
  bin: 2.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29182
  bin: 2.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8314
  bin: 9.75e1
  variant carriers: 262
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 5
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

14-90485634-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485634
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485634
    reference: chr 14
allele count: 3
allele frequency: 2.610057421263268e-5
allele num: 114940
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.825-26C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1542-26C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*865-26C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1101-26C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1542-26C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1542-26C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1542-26C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.463-26C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*727-26C>T
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29182
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8314
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

14-90485638-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485638
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485638
    reference: chr 14
allele count: 2
allele frequency: 1.721970623181168e-5
allele num: 116146
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1542-22A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.825-22A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*865-22A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1542-22A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1542-22A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*727-22A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1542-22A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1101-22A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.463-22A>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9241
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36947
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

14-90485647-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485647
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485647
    reference: chr 14
allele count: 1
allele frequency: 8.496032352891199e-6
allele num: 117702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.463-13C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1542-13C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1542-13C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*727-13C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.825-13C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1542-13C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*865-13C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1542-13C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1101-13C>T
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

14-90485648-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485648
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485648
    reference: chr 14
allele count: 1
allele frequency: 8.484930762964974e-6
allele num: 117856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1542-12T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1542-12T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1542-12T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*865-12T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1542-12T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.825-12T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*727-12T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1101-12T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.463-12T>A
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

14-90485650-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485650
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485650
    reference: chr 14
allele count: 3
allele frequency: 2.537684616555855e-5
allele num: 118218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1542-10G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1542-10G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.463-10G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*865-10G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1542-10G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1542-10G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.825-10G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*727-10G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1101-10G>A
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34308
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11022
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

14-90485658-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485658
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485658
    reference: chr 14
allele count: 1
allele frequency: 8.37184381488179e-6
allele num: 119448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.463-2A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*865-2A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*727-2A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.825-2A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1542-2A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1542-2A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1542-2A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1101-2A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1542-2A>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1542-2A>G
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

14-90485659-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485659
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485659
    reference: chr 14
allele count: 1
allele frequency: 8.365960579593749e-6
allele num: 119532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1542-1G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.463-1G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.825-1G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1542-1G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1101-1G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1542-1G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*865-1G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*727-1G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1542-1G>A
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1542-1G>A
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

14-90485660-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485660
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485660
    reference: chr 14
allele count: 2
allele frequency: 1.670648378635748e-5
allele num: 119714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1542C>T
  hgvsp: ENST00000393454.2:c.1542C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1542C>T
  hgvsp: ENST00000335725.4:c.1542C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1542C>T
  hgvsp: ENST00000555880.1:c.1542C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1542C>T
  hgvsp: ENST00000393452.3:c.1542C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.825C>T
  hgvsp: ENST00000357382.3:c.825C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.463C>T
  hgvsp: ENST00000556063.1:c.463C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1101C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*865C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*727C>T
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35532
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1542C>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

14-90485661-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485661
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485661
    reference: chr 14
allele count: 27
allele frequency: 2.253304847109093e-4
allele num: 119824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1543G>A
  hgvsp: ENSP00000377099.2:p.Ala515Thr
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1102G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.464G>A
  hgvsp: ENSP00000450795.1:p.Ala156Thr
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*866G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1543G>A
  hgvsp: ENSP00000450628.1:p.Ala515Thr
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.826G>A
  hgvsp: ENSP00000349952.3:p.Ala276Thr
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1543G>A
  hgvsp: ENSP00000337353.4:p.Ala515Thr
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1543G>A
  hgvsp: ENSP00000377098.3:p.Ala515Thr
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*728G>A
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12213
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala515Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

14-90485664-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485664
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485664
    reference: chr 14
allele count: 3
allele frequency: 2.496006389776358e-5
allele num: 120192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1546A>G
  hgvsp: ENSP00000377099.2:p.Asn516Asp
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.467A>G
  hgvsp: ENSP00000450795.1:p.Asn157Asp
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*869A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1546A>G
  hgvsp: ENSP00000337353.4:p.Asn516Asp
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1546A>G
  hgvsp: ENSP00000377098.3:p.Asn516Asp
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*731A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.829A>G
  hgvsp: ENSP00000349952.3:p.Asn277Asp
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1105A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1546A>G
  hgvsp: ENSP00000450628.1:p.Asn516Asp
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12464
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8185
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Asn516Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

14-90485673-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485673
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485673
    reference: chr 14
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.476A>G
  hgvsp: ENSP00000450795.1:p.Lys160Glu
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1555A>G
  hgvsp: ENSP00000377099.2:p.Lys519Glu
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*878A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.838A>G
  hgvsp: ENSP00000349952.3:p.Lys280Glu
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1555A>G
  hgvsp: ENSP00000377098.3:p.Lys519Glu
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1555A>G
  hgvsp: ENSP00000337353.4:p.Lys519Glu
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1555A>G
  hgvsp: ENSP00000450628.1:p.Lys519Glu
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1114A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*740A>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys519Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum

14-90485674-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485674
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485674
    reference: chr 14
allele count: 1
allele frequency: 8.291186468783682e-6
allele num: 120610
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.839A>G
  hgvsp: ENSP00000349952.3:p.Lys280Arg
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1556A>G
  hgvsp: ENSP00000450628.1:p.Lys519Arg
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1115A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*879A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1556A>G
  hgvsp: ENSP00000377099.2:p.Lys519Arg
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.477A>G
  hgvsp: ENSP00000450795.1:p.Lys160Arg
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1556A>G
  hgvsp: ENSP00000377098.3:p.Lys519Arg
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*741A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1556A>G
  hgvsp: ENSP00000337353.4:p.Lys519Arg
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys519Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

14-90485678-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485678
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485678
    reference: chr 14
allele count: 3
allele frequency: 2.484718978283556e-5
allele num: 120738
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1119T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.843T>G
  hgvsp: ENST00000357382.3:c.843T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*883T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1560T>G
  hgvsp: ENST00000393454.2:c.1560T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1560T>G
  hgvsp: ENST00000335725.4:c.1560T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.481T>G
  hgvsp: ENST00000556063.1:c.481T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1560T>G
  hgvsp: ENST00000393452.3:c.1560T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1560T>G
  hgvsp: ENST00000555880.1:c.1560T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*745T>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8187
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala520Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

14-90485688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485688
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485688
    reference: chr 14
allele count: 1
allele frequency: 8.267879288962381e-6
allele num: 120950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1570G>A
  hgvsp: ENSP00000377098.3:p.Ala524Thr
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1570G>A
  hgvsp: ENSP00000377099.2:p.Ala524Thr
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*755G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1570G>A
  hgvsp: ENSP00000450628.1:p.Ala524Thr
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*893G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1570G>A
  hgvsp: ENSP00000337353.4:p.Ala524Thr
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.491G>A
  hgvsp: ENSP00000450795.1:p.Ala165Thr
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1129G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.853G>A
  hgvsp: ENSP00000349952.3:p.Ala285Thr
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala524Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-90485691-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485691
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485691
    reference: chr 14
allele count: 4
allele frequency: 3.305785123966942e-5
allele num: 121000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1573T>C
  hgvsp: ENST00000393452.3:c.1573T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1573T>C
  hgvsp: ENST00000555880.1:c.1573T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*896T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.494T>C
  hgvsp: ENST00000556063.1:c.494T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1573T>C
  hgvsp: ENST00000335725.4:c.1573T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*758T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1573T>C
  hgvsp: ENST00000393454.2:c.1573T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.856T>C
  hgvsp: ENST00000357382.3:c.856T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1132T>C
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13253
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu525Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

14-90485692-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485692
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485692
    reference: chr 14
allele count: 1
allele frequency: 8.264736024331383e-6
allele num: 120996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1133T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1574T>C
  hgvsp: ENSP00000450628.1:p.Leu525Ser
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.495T>C
  hgvsp: ENSP00000450795.1:p.Leu166Ser
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.857T>C
  hgvsp: ENSP00000349952.3:p.Leu286Ser
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1574T>C
  hgvsp: ENSP00000377099.2:p.Leu525Ser
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1574T>C
  hgvsp: ENSP00000377098.3:p.Leu525Ser
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*897T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1574T>C
  hgvsp: ENSP00000337353.4:p.Leu525Ser
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*759T>C
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35793
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu525Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

14-90485694-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485694
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485694
    reference: chr 14
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*899G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.497G>C
  hgvsp: ENSP00000450795.1:p.Glu167Gln
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1576G>C
  hgvsp: ENSP00000377099.2:p.Glu526Gln
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1576G>C
  hgvsp: ENSP00000337353.4:p.Glu526Gln
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1576G>C
  hgvsp: ENSP00000450628.1:p.Glu526Gln
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*761G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.859G>C
  hgvsp: ENSP00000349952.3:p.Glu287Gln
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1576G>C
  hgvsp: ENSP00000377098.3:p.Glu526Gln
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1135G>C
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3741
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu526Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

14-90485696-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485696
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485695
    reference: chr 14
allele count: 2
allele frequency: 1.652346331791144e-5
allele num: 121040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1580delA
  hgvsp: ENSP00000377099.2:p.Lys527ArgfsTer6
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1580delA
  hgvsp: ENSP00000377098.3:p.Lys527ArgfsTer6
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1580delA
  hgvsp: ENSP00000337353.4:p.Lys527ArgfsTer6
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1139delA
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.501delA
  hgvsp: ENSP00000450795.1:p.Lys168ArgfsTer6
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.863delA
  hgvsp: ENSP00000349952.3:p.Lys288ArgfsTer6
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1580delA
  hgvsp: ENSP00000450628.1:p.Lys527ArgfsTer6
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*765delA
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*903delA
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys527ArgfsTer6
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: GA
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

14-90485697-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485697
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485697
    reference: chr 14
allele count: 2
allele frequency: 1.65218253312626e-5
allele num: 121052
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*902A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1579A>G
  hgvsp: ENSP00000377099.2:p.Lys527Glu
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1579A>G
  hgvsp: ENSP00000337353.4:p.Lys527Glu
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1579A>G
  hgvsp: ENSP00000377098.3:p.Lys527Glu
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.862A>G
  hgvsp: ENSP00000349952.3:p.Lys288Glu
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.500A>G
  hgvsp: ENSP00000450795.1:p.Lys168Glu
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*764A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1138A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1579A>G
  hgvsp: ENSP00000450628.1:p.Lys527Glu
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45534
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys527Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/14-90485707-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485707
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485707
    reference: chr 14
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1589C>A
  hgvsp: ENSP00000337353.4:p.Thr530Asn
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*912C>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.872C>A
  hgvsp: ENSP00000349952.3:p.Thr291Asn
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1148C>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1589C>A
  hgvsp: ENSP00000377099.2:p.Thr530Asn
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1589C>A
  hgvsp: ENSP00000377098.3:p.Thr530Asn
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1589C>A
  hgvsp: ENSP00000450628.1:p.Thr530Asn
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.510C>A
  hgvsp: ENSP00000450795.1:p.Thr171Asn
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*774C>A
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr530Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

14-90485707-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485707
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485707
    reference: chr 14
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1589C>T
  hgvsp: ENSP00000377098.3:p.Thr530Ile
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1589C>T
  hgvsp: ENSP00000377099.2:p.Thr530Ile
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.872C>T
  hgvsp: ENSP00000349952.3:p.Thr291Ile
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*912C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.510C>T
  hgvsp: ENSP00000450795.1:p.Thr171Ile
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1589C>T
  hgvsp: ENSP00000450628.1:p.Thr530Ile
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*774C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1589C>T
  hgvsp: ENSP00000337353.4:p.Thr530Ile
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1148C>T
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr530Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

14-90485721-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485721
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485721
    reference: chr 14
allele count: 2
allele frequency: 1.654725067430047e-5
allele num: 120866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1603C>T
  hgvsp: ENSP00000450628.1:p.Arg535Cys
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1603C>T
  hgvsp: ENSP00000377098.3:p.Arg535Cys
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1603C>T
  hgvsp: ENSP00000337353.4:p.Arg535Cys
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*926C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.524C>T
  hgvsp: ENSP00000450795.1:p.Arg176Cys
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.886C>T
  hgvsp: ENSP00000349952.3:p.Arg296Cys
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1162C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*788C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1603C>T
  hgvsp: ENSP00000377099.2:p.Arg535Cys
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg535Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

14-90485722-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485722
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485722
    reference: chr 14
allele count: 1
allele frequency: 8.281847845891375e-6
allele num: 120746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1604G>A
  hgvsp: ENSP00000377098.3:p.Arg535His
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1604G>A
  hgvsp: ENSP00000377099.2:p.Arg535His
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1604G>A
  hgvsp: ENSP00000450628.1:p.Arg535His
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1604G>A
  hgvsp: ENSP00000337353.4:p.Arg535His
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.525G>A
  hgvsp: ENSP00000450795.1:p.Arg176His
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.887G>A
  hgvsp: ENSP00000349952.3:p.Arg296His
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1163G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*927G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*789G>A
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg535His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum

14-90485725-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485725
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485725
    reference: chr 14
allele count: 4
allele frequency: 3.31273913835655e-5
allele num: 120746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*930C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1607C>T
  hgvsp: ENSP00000377098.3:p.Ser536Phe
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.528C>T
  hgvsp: ENSP00000450795.1:p.Ser177Phe
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1166C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1607C>T
  hgvsp: ENSP00000337353.4:p.Ser536Phe
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1607C>T
  hgvsp: ENSP00000377099.2:p.Ser536Phe
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*792C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.890C>T
  hgvsp: ENSP00000349952.3:p.Ser297Phe
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1607C>T
  hgvsp: ENSP00000450628.1:p.Ser536Phe
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser536Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

14-90485729-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485729
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485729
    reference: chr 14
allele count: 5
allele frequency: 4.145661979304855e-5
allele num: 120608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*934C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1170C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*796C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1611C>G
  hgvsp: ENSP00000337353.4:p.Tyr537Ter
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1611C>G
  hgvsp: ENSP00000377099.2:p.Tyr537Ter
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1611C>G
  hgvsp: ENSP00000377098.3:p.Tyr537Ter
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.894C>G
  hgvsp: ENSP00000349952.3:p.Tyr298Ter
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.532C>G
  hgvsp: ENSP00000450795.1:p.Tyr178Ter
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1611C>G
  hgvsp: ENSP00000450628.1:p.Tyr537Ter
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34911
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13511
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr537Ter
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP

14-90485729-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485729
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485729
    reference: chr 14
allele count: 8
allele frequency: 6.633059166887768e-5
allele num: 120608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1611C>T
  hgvsp: ENST00000393452.3:c.1611C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1611C>T
  hgvsp: ENST00000335725.4:c.1611C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*934C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1170C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.532C>T
  hgvsp: ENST00000556063.1:c.532C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1611C>T
  hgvsp: ENST00000393454.2:c.1611C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.894C>T
  hgvsp: ENST00000357382.3:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*796C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1611C>T
  hgvsp: ENST00000555880.1:c.1611C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3677
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr537Tyr
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

14-90485730-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485730
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485730
    reference: chr 14
allele count: 4
allele frequency: 3.31746479340488e-5
allele num: 120574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1612G>A
  hgvsp: ENSP00000377098.3:p.Glu538Lys
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1612G>A
  hgvsp: ENSP00000377099.2:p.Glu538Lys
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1612G>A
  hgvsp: ENSP00000337353.4:p.Glu538Lys
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.533G>A
  hgvsp: ENSP00000450795.1:p.Glu179Lys
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1171G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1612G>A
  hgvsp: ENSP00000450628.1:p.Glu538Lys
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*797G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*935G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.895G>A
  hgvsp: ENSP00000349952.3:p.Glu299Lys
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu538Lys
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

14-90485735-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485735
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485735
    reference: chr 14
allele count: 4
allele frequency: 3.323749854585944e-5
allele num: 120346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*940C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1617C>T
  hgvsp: ENST00000335725.4:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.538C>T
  hgvsp: ENST00000556063.1:c.538C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1176C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1617C>T
  hgvsp: ENST00000393452.3:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1617C>T
  hgvsp: ENST00000393454.2:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.900C>T
  hgvsp: ENST00000357382.3:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1617C>T
  hgvsp: ENST00000555880.1:c.1617C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*802C>T
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3644
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu539Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

14-90485736-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485736
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485736
    reference: chr 14
allele count: 2
allele frequency: 1.662759182587586e-5
allele num: 120282
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1618G>A
  hgvsp: ENSP00000337353.4:p.Gly540Arg
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.539G>A
  hgvsp: ENSP00000450795.1:p.Gly181Arg
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.901G>A
  hgvsp: ENSP00000349952.3:p.Gly301Arg
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1618G>A
  hgvsp: ENSP00000377099.2:p.Gly540Arg
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1618G>A
  hgvsp: ENSP00000377098.3:p.Gly540Arg
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1618G>A
  hgvsp: ENSP00000450628.1:p.Gly540Arg
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1177G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*803G>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*941G>A
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly540Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

14-90485751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485751
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485751
    reference: chr 14
allele count: 1
allele frequency: 8.429002511842749e-6
allele num: 118638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1633C>T
  hgvsp: ENSP00000377099.2:p.Pro545Ser
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1633C>T
  hgvsp: ENSP00000450628.1:p.Pro545Ser
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1633C>T
  hgvsp: ENSP00000377098.3:p.Pro545Ser
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*956C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.554C>T
  hgvsp: ENSP00000450795.1:p.Pro186Ser
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*818C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.916C>T
  hgvsp: ENSP00000349952.3:p.Pro306Ser
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1633C>T
  hgvsp: ENSP00000337353.4:p.Pro545Ser
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1192C>T
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro545Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

14-90485764-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485764
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485764
    reference: chr 14
allele count: 1
allele frequency: 8.708980700898767e-6
allele num: 114824
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+2T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+2T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+2T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+2T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+2T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+2T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+2T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1644+2T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+2T>C
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3007
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7208
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1644+2T>C
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

14-90485772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485772
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485772
    reference: chr 14
allele count: 1
allele frequency: 8.969897025582147e-6
allele num: 111484
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+10C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+10C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+10C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+10C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+10C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1644+10C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+10C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+10C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+10C>T
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8186
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

14-90485773-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485773
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485773
    reference: chr 14
allele count: 1
allele frequency: 9.014531424656546e-6
allele num: 110932
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+11A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+11A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+11A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+11A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1644+11A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+11A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+11A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+11A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+11A>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3325
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/14-90485774-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485774
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485774
    reference: chr 14
allele count: 2
allele frequency: 1.814552712756305e-5
allele num: 110220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+12C>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+12C>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+12C>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+12C>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+12C>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+12C>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+12C>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+12C>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1644+12C>A
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3334
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

14-90485780-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485780
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485780
    reference: chr 14
allele count: 4
allele frequency: 3.681749567394426e-5
allele num: 108644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+18A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+18A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+18A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+18A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1644+18A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+18A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+18A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+18A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+18A>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14204
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4879
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

14-90485797-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485797
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485797
    reference: chr 14
allele count: 1
allele frequency: 9.769059434957602e-6
allele num: 102364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+35A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1644+35A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+35A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+35A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+35A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+35A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+35A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+35A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+35A>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21964
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10392
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6857
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8078
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4923
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

14-90485801-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485801
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485801
    reference: chr 14
allele count: 1
allele frequency: 9.961349962146871e-6
allele num: 100388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+39G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+39G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+39G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1644+39G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+39G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+39G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+39G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+39G>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+39G>C
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5793
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

14-90485804-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485804
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485804
    reference: chr 14
allele count: 13
allele frequency: 1.306900434293067e-4
allele num: 99472
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+42A>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+42A>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+42A>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+42A>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+42A>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1644+42A>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+42A>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+42A>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+42A>T
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11867
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 21157
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD

14-90485809-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90485809
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90485809
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 96036
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+47T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+47T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+47T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+47T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+47T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+47T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+47T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1644+47T>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+47T>C
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10822
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11663
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

14-90489326-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90489326
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90489326
    reference: chr 14
allele count: 2
allele frequency: 2.479113469023477e-5
allele num: 80674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1645-50C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+3564C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+3564C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+3564C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+3564C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+3564C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+3564C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+3564C>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+3564C>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17798
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3770
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

14-90489330-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90489330
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90489330
    reference: chr 14
allele count: 7
allele frequency: 8.648808935455174e-5
allele num: 80936
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+3568A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+3568A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+3568A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+3568A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+3568A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+3568A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+3568A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+3568A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1645-46A>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13941
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17801
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9652
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5919
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4589
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS

14-90489339-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90489339
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90489339
    reference: chr 14
allele count: 1
allele frequency: 1.225430125974217e-5
allele num: 81604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+3577T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+3577T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+3577T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+3577T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1645-37T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+3577T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+3577T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+3577T>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+3577T>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14026
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17037
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6731
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

14-90489341-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90489341
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90489341
    reference: chr 14
allele count: 2
allele frequency: 2.444987775061125e-5
allele num: 81800
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+3579A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1645-35A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+3579A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+3579A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+3579A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+3579A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+3579A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+3579A>G
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+3579A>G
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10748
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16627
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4857
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4414
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6582
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11394
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

14-90489343-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90489343
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90489343
    reference: chr 14
allele count: 1
allele frequency: 1.220345601874451e-5
allele num: 81944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+3581T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+3581T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+3581T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+3581T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+3581T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+3581T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+3581T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1645-33T>A
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+3581T>A
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12396
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4552
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/14-90489347-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90489347
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90489347
    reference: chr 14
allele count: 1
allele frequency: 1.210800339024095e-5
allele num: 82590
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+3585A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+3585A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+3585A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+3585A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+3585A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1645-29A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+3585A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+3585A>C
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+3585A>C
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

14-90489354-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90489354
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90489354
    reference: chr 14
allele count: 1
allele frequency: 1.197060020589432e-5
allele num: 83538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000444587
  ensembl transcript: ENST00000545686
  gene symbol: TDP1
  hgvsc: ENST00000545686.2:c.*967+3592C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450628
  ensembl transcript: ENST00000555880
  gene symbol: TDP1
  hgvsc: ENST00000555880.1:c.1644+3592C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377099
  ensembl transcript: ENST00000393454
  gene symbol: TDP1
  hgvsc: ENST00000393454.2:c.1644+3592C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000377098
  ensembl transcript: ENST00000393452
  gene symbol: TDP1
  hgvsc: ENST00000393452.3:c.1645-22C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000450795
  ensembl transcript: ENST00000556063
  gene symbol: TDP1
  hgvsc: ENST00000556063.1:c.565+3592C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000349952
  ensembl transcript: ENST00000357382
  gene symbol: TDP1
  hgvsc: ENST00000357382.3:c.927+3592C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000337353
  ensembl transcript: ENST00000335725
  gene symbol: TDP1
  hgvsc: ENST00000335725.4:c.1644+3592C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452042
  ensembl transcript: ENST00000554976
  gene symbol: TDP1
  hgvsc: ENST00000554976.1:c.*1203+3592C>T
  variant of: http://identifiers.org/hgnc/18884
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000042088
  ensembl protein: ENSP00000452363
  ensembl transcript: ENST00000555178
  gene symbol: TDP1
  hgvsc: ENST00000555178.1:c.*829+3592C>T
  variant of: http://identifiers.org/hgnc/18884
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16721
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13623
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15789
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2913
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

14-90489355-CCTGTGCCTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 90489355
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 90489346
allele count: 2
allele frequency: 2.3860084464699e-5
allele num: 83822
alternate allele: C
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: CCTGTGCCTG

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2349
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 5.25e1
variant carriers: 1

African
type: Population
allele count: 8
allele frequency: 7.860090391039497e-4
allele num: 10178
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.510482750286992e-4
allele num: 66204
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.212389380530973e-3
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 181
allele frequency: 1.096305269533616e-2
allele num: 16510
num of homozygotes: 3

Latino
type: Population
allele count: 6
allele frequency: 5.191209551825575e-4
allele num: 11558
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.64e-2

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 1.647267e6

FS
type: SiteQuality
SIO_000300: 1.148e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.377e1

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509798592867711e-5
allele num: 66234
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

DP
type: SiteQuality
SIO_000300: 1.642011e6

VQSLOD
type: SiteQuality
SIO_000300: -1.116e0

QD
type: SiteQuality
SIO_000300: 4.53e0

FS
type: SiteQuality
SIO_000300: 9.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.112e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.87e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
all individuals: 227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2626
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: -8.927e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 1.642232e6

QD
type: SiteQuality
SIO_000300: 7.07e0

FS
type: SiteQuality
SIO_000300: 2.747e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.111e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
all individuals: 717
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2367
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9880
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2620
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313743637204998e-4
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66226
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.850000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.45e0

QD
type: SiteQuality
SIO_000300: 1.347e1

DP
type: SiteQuality
SIO_000300: 1.642006e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

FS
type: SiteQuality
SIO_000300: 2.626e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
all individuals: 382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9870
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66230
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731301939058172e-4
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 114
allele frequency: 1.319444444444444e-2
allele num: 8640
num of homozygotes: 2

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.89159465828751e-4
allele num: 10184
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.72e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

FS
type: SiteQuality
SIO_000300: 6.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 1.645509e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.672e0

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

GenotypeQuality
all individuals: 382
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509889778046203e-5
allele num: 66230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.672e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 6.07e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

DP
type: SiteQuality
SIO_000300: 1.645509e6

GenotypeQuality
all individuals: 272
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9765
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2352
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40765
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66150
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.23e-1

DP
type: SiteQuality
SIO_000300: 1.639774e6

QD
type: SiteQuality
SIO_000300: 1.127e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 5.866e1

VQSLOD
type: SiteQuality
SIO_000300: -1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.284e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.32e-1

GenotypeQuality
all individuals: 2356
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510300247689241e-5
allele num: 66212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.199e0

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

DP
type: SiteQuality
SIO_000300: 1.639412e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.148e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

GenotypeQuality
all individuals: 2343
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41219
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9752
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020782986950218e-5
allele num: 66208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

DP
type: SiteQuality
SIO_000300: 1.63996e6

MQRankSum
type: SiteQuality
SIO_000300: -9.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

FS
type: SiteQuality
SIO_000300: 8.287000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 5.777e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9752
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2343
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510391493475109e-5
allele num: 66208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.63996e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -9.44e-1

FS
type: SiteQuality
SIO_000300: 8.287000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

MQ
type: SiteQuality
SIO_000300: 5.777e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

GenotypeQuality
all individuals: 212
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510391493475109e-5
allele num: 66208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.777e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.44e-1

FS
type: SiteQuality
SIO_000300: 8.287000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

DP
type: SiteQuality
SIO_000300: 1.63996e6

GenotypeQuality
all individuals: 2560
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9722
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.45e-1

QD
type: SiteQuality
SIO_000300: 1.063e1

MQ
type: SiteQuality
SIO_000300: 5.832e1

VQSLOD
type: SiteQuality
SIO_000300: -2.394e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 4.288e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.57e-1

DP
type: SiteQuality
SIO_000300: 1.639607e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.79e-1

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
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variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.936570086139389e-4
allele num: 10216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66202
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.273e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 1.016e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 1.639401e6

QD
type: SiteQuality
SIO_000300: 1.248e1

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9763
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508932882665379e-5
allele num: 66272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.63724e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.389e0

FS
type: SiteQuality
SIO_000300: 1.338e0

MQRankSum
type: SiteQuality
SIO_000300: 7.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.134e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 178
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variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.056795193091579e-4
allele num: 66238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

MQ
type: SiteQuality
SIO_000300: 5.177e1

DP
type: SiteQuality
SIO_000300: 1.63585e6

VQSLOD
type: SiteQuality
SIO_000300: -5.5e-3

QD
type: SiteQuality
SIO_000300: 3.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 4.683e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

GenotypeQuality
all individuals: 1114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 448
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GenotypeQuality
all individuals: 7412
bin: 9.75e1
variant carriers: 20

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8754
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variant carriers: 0

GenotypeQuality
all individuals: 265
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variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57468
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 1.283783783783784e-3
allele num: 14800
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 4.537e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

MQ
type: SiteQuality
SIO_000300: 5.496e1

VQSLOD
type: SiteQuality
SIO_000300: -1.201e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-1

DP
type: SiteQuality
SIO_000300: 1.255193e6

GenotypeQuality
all individuals: 5245
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1953
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variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1902
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GenotypeQuality
all individuals: 1100
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 554
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GenotypeQuality
all individuals: 994
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.754447524474543e-5
allele num: 56998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14732
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.719e1

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

QD
type: SiteQuality
SIO_000300: 2.011e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

DP
type: SiteQuality
SIO_000300: 1.245412e6

VQSLOD
type: SiteQuality
SIO_000300: -3.523e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.192e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.851851851851852e-5
allele num: 54000
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

QD
type: SiteQuality
SIO_000300: 1.824e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 4.856e1

VQSLOD
type: SiteQuality
SIO_000300: -1.275e0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.227034e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7401
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8768
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.833e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 5.447e1

DP
type: SiteQuality
SIO_000300: 1.22438e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.067e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 667
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GenotypeQuality
all individuals: 465
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GenotypeQuality
all individuals: 210
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variant carriers: 0

GenotypeQuality
all individuals: 5620
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.607717041800643e-5
allele num: 62200
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 2.85e-1

QD
type: SiteQuality
SIO_000300: 1.783e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8068
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62216
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15122
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.049600327936052e-4
allele num: 9758
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10516
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.3e-3

ReadPosRankSum
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VQSLOD
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -5.55e-1

QD
type: SiteQuality
SIO_000300: 1.144e1

MQRankSum
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SIO_000300: -9.350000000000001e-1

DP
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SIO_000300: 1.564411e6

FS
type: SiteQuality
SIO_000300: 3.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.193561779452623e-5
allele num: 62626
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15184
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.407e-1

QD
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DP
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SIO_000300: 1.626478e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.3e-3

BaseQRankSum
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SIO_000300: -4.917e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -1.54e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.592661018028923e-5
allele num: 62788
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.944e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.405e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.645887e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

South Asian
type: Population
allele count: 190
allele frequency: 1.241505488761108e-2
allele num: 15304
num of homozygotes: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 7.401924500370096e-4
allele num: 10808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 68
allele frequency: 1.070663811563169e-3
allele num: 63512
num of homozygotes: 1

Other
type: Population
allele count: 5
allele frequency: 5.995203836930456e-3
allele num: 834
num of homozygotes: 1

QD
type: SiteQuality
SIO_000300: 1.399e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.239e0

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

FS
type: SiteQuality
SIO_000300: 2.619e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.17e-1

DP
type: SiteQuality
SIO_000300: 1.715037e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.723516815719864e-5
allele num: 63512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.619e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

VQSLOD
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.489292667099286e-5
allele num: 15410
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.557923599426684e-5
allele num: 64188
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
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ClippingRankSum
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VQSLOD
type: SiteQuality
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DP
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InbreedingCoeff
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SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65056
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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allele frequency: 6.420958006934635e-5
allele num: 15574
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African
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Other
type: Population
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East Asian
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DP
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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QD
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MQRankSum
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534966537729477e-5
allele num: 65148
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15584
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11218
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQ
type: SiteQuality
SIO_000300: 5.852e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.742e0

VQSLOD
type: SiteQuality
SIO_000300: -1.649e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.38e-1

DP
type: SiteQuality
SIO_000300: 1.789307e6

QD
type: SiteQuality
SIO_000300: 1.196e1

GenotypeQuality
all individuals: 41012
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 1034
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.966181675186787e-4
allele num: 10172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530268715186387e-5
allele num: 65348
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.911e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.9544e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.128e0

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

QD
type: SiteQuality
SIO_000300: 1.153e1

DP
type: SiteQuality
SIO_000300: 1.797272e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.75e-1

GenotypeQuality
all individuals: 380
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515105602860519e-5
allele num: 66002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15866
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.681e-1

FS
type: SiteQuality
SIO_000300: 2.915e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.433e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.23e-1

QD
type: SiteQuality
SIO_000300: 8.52e0

DP
type: SiteQuality
SIO_000300: 1.823866e6

GenotypeQuality
all individuals: 366
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.543686322939179e-4
allele num: 6478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.844e0

VQSLOD
type: SiteQuality
SIO_000300: 3.7e-1

FS
type: SiteQuality
SIO_000300: 4.331e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

QD
type: SiteQuality
SIO_000300: 1.404e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.047e0

DP
type: SiteQuality
SIO_000300: 1.825912e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 8182
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 497
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GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.761170492377782e-5
allele num: 11414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.275100401606425e-5
allele num: 15936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.509e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.902e0

DP
type: SiteQuality
SIO_000300: 1.829629e6

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.027e1

GenotypeQuality
all individuals: 288
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 27

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 194
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.498338289312576e-4
allele num: 11434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.720183763525358e-4
allele num: 66172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.133224714876551e-4
allele num: 15958
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.836315e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.227e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

FS
type: SiteQuality
SIO_000300: 1.992e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.02e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50793172085168e-5
allele num: 66316
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.937608990505716e-4
allele num: 10322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

FS
type: SiteQuality
SIO_000300: 1.001e0

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.042e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.169031462060457e-5
allele num: 16210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66448
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
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African
type: Population
allele count: 0
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allele num: 10356
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MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.98e1

QD
type: SiteQuality
SIO_000300: 1.291e1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.846597e6

FS
type: SiteQuality
SIO_000300: 1.0961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.324e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504483360414034e-5
allele num: 66468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.228e1

MQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

DP
type: SiteQuality
SIO_000300: 1.847253e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.074e0

VQSLOD
type: SiteQuality
SIO_000300: 3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.510057428064584e-5
allele num: 66518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.9e-1

DP
type: SiteQuality
SIO_000300: 1.849384e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 2.22e0

VQSLOD
type: SiteQuality
SIO_000300: 5.3e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

MQ
type: SiteQuality
SIO_000300: 5.939e1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.128953174797744e-5
allele num: 16316
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.314e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.854759e6

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 7.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

QD
type: SiteQuality
SIO_000300: 1.184e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.842e0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.503422601176894e-5
allele num: 66616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.408e1

DP
type: SiteQuality
SIO_000300: 1.855531e6

MQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.71e-1

GenotypeQuality
all individuals: 878
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variant carriers: 0

GenotypeQuality
all individuals: 3742
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 508
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variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.121449559255632e-5
allele num: 16336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.927e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.495e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

FS
type: SiteQuality
SIO_000300: 3.386e0

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

VQSLOD
type: SiteQuality
SIO_000300: 9.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.855664e6

QD
type: SiteQuality
SIO_000300: 1.217e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 502
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GenotypeQuality
all individuals: 45440
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.119202056051891e-5
allele num: 16342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.316e0

FS
type: SiteQuality
SIO_000300: 2.856e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.856346e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.55e-1

QD
type: SiteQuality
SIO_000300: 1.304e1

GenotypeQuality
all individuals: 8187
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 500
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.0016509079994e-5
allele num: 66630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.856676e6

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.07e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.269e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92492781520693e-4
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.856652e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.182e1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.85e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3749
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.989e1

DP
type: SiteQuality
SIO_000300: 1.857553e6

FS
type: SiteQuality
SIO_000300: 5.798e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.64e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 7.44e0

GenotypeQuality
all individuals: 869
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variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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QD
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DP
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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SIO_000300: 1.8e0

FS
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SIO_000300: 5.798e0

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQ
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SIO_000300: 5.989e1

BaseQRankSum
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SIO_000300: -2.929e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
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South Asian
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allele frequency: 6.141751627564181e-5
allele num: 16282
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BaseQRankSum
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SIO_000300: 3.14e0

MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.51e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11508
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African
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allele count: 1
allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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VQSLOD
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SIO_000300: -2.041e0

FS
type: SiteQuality
SIO_000300: 2.763e0

BaseQRankSum
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SIO_000300: -2.515e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.01e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
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DP
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MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -6.48e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.463357556349304e-4
allele num: 16238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: -1.702e0

DP
type: SiteQuality
SIO_000300: 1.853416e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.8e-1

FS
type: SiteQuality
SIO_000300: 1.3076e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

QD
type: SiteQuality
SIO_000300: 1.107e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.520606461705072e-5
allele num: 66484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
SIO_000300: 1.209e1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.851447e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504121292341014e-5
allele num: 66484
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8614
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Latino
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allele frequency: 6.091193873999304e-4
allele num: 11492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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FS
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DP
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.740644038294169e-4
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.008604609182261e-5
allele num: 66476
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6560
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 492
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.209637357178341e-5
allele num: 16104
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Other
type: Population
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allele frequency: 0.0e0
allele num: 902
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 3
allele frequency: 3.48594004183128e-4
allele num: 8606
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

MQRankSum
type: SiteQuality
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ClippingRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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BaseQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8186
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014499743767522e-5
allele num: 66346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.31e-1

FS
type: SiteQuality
SIO_000300: 5.214e0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.975e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-1

QD
type: SiteQuality
SIO_000300: 1.023e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.846517e6

GenotypeQuality
all individuals: 41904
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8186
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172058134083451e-4
allele num: 8532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.48e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.844e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.93e-1

DP
type: SiteQuality
SIO_000300: 1.818063e6

GenotypeQuality
all individuals: 696
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
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variant carriers: 0

GenotypeQuality
all individuals: 212
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 11
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.237021984112322e-5
allele num: 10826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

DP
type: SiteQuality
SIO_000300: 1.733558e6

MQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

QD
type: SiteQuality
SIO_000300: 1.365e1

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 154
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variant carriers: 0

GenotypeQuality
all individuals: 359
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.622375807131964e-5
allele num: 61638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.694e0

FS
type: SiteQuality
SIO_000300: 7.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.91e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
SIO_000300: 1.644311e6

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

GenotypeQuality
all individuals: 25351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12233
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GenotypeQuality
all individuals: 8187
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GenotypeQuality
all individuals: 649
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GenotypeQuality
all individuals: 385
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GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 179
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GenotypeQuality
all individuals: 512
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 2661
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variant carriers: 0

GenotypeQuality
all individuals: 459
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variant carriers: 0

GenotypeQuality
all individuals: 380
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variant carriers: 0

GenotypeQuality
all individuals: 2999
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variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.754931099702783e-5
allele num: 14804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.227e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

QD
type: SiteQuality
SIO_000300: 1.832e1

DP
type: SiteQuality
SIO_000300: 1.624989e6

VQSLOD
type: SiteQuality
SIO_000300: -5.155e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 13102
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
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GenotypeQuality
all individuals: 22753
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GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 462
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variant carriers: 0

GenotypeQuality
all individuals: 3758
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variant carriers: 0

GenotypeQuality
all individuals: 438
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variant carriers: 0

GenotypeQuality
all individuals: 636
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GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
all individuals: 2527
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variant carriers: 0

GenotypeQuality
all individuals: 8186
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 647
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.282132072994617e-5
allele num: 60936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 1.7402e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.725e0

VQSLOD
type: SiteQuality
SIO_000300: -2.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.436e1

DP
type: SiteQuality
SIO_000300: 1.603941e6

GenotypeQuality
all individuals: 615
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
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GenotypeQuality
all individuals: 15224
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variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
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variant carriers: 0

GenotypeQuality
all individuals: 453
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GenotypeQuality
all individuals: 494
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variant carriers: 0

GenotypeQuality
all individuals: 18663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8188
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 1
allele frequency: 9.956192751891676e-5
allele num: 10044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.665278934221482e-5
allele num: 60050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5908
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.091612633340306e-4
allele num: 9562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7722
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.546403e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

FS
type: SiteQuality
SIO_000300: 1.9179e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

GenotypeQuality
all individuals: 5759
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17184
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variant carriers: 0

GenotypeQuality
all individuals: 113
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variant carriers: 0

GenotypeQuality
all individuals: 434
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GenotypeQuality
all individuals: 1385
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GenotypeQuality
all individuals: 208
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GenotypeQuality
all individuals: 1168
bin: 4.75e1
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GenotypeQuality
all individuals: 1158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
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GenotypeQuality
all individuals: 8186
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GenotypeQuality
all individuals: 1510
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GenotypeQuality
all individuals: 357
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GenotypeQuality
all individuals: 324
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GenotypeQuality
all individuals: 934
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13886
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.38121546961326e-4
allele num: 7240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.604e1

DP
type: SiteQuality
SIO_000300: 1.398074e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

GenotypeQuality
all individuals: 1574
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1055
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 555
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GenotypeQuality
all individuals: 1679
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GenotypeQuality
all individuals: 1051
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
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GenotypeQuality
all individuals: 429
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GenotypeQuality
all individuals: 5237
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16530
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7086
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.810347948875774e-5
allele num: 55238
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.747e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.27e-1

DP
type: SiteQuality
SIO_000300: 1.378293e6

MQRankSum
type: SiteQuality
SIO_000300: -1.741e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.27e-1

FS
type: SiteQuality
SIO_000300: 3.68e0

QD
type: SiteQuality
SIO_000300: 1.184e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.045e0

GenotypeQuality
all individuals: 8349
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 429
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.375644165052447e-4
allele num: 54722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13566
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 1.369216e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.194e0

QD
type: SiteQuality
SIO_000300: 1.207e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5298
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.357161e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.473e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5832
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.387533875338753e-4
allele num: 5904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 1.481e0

VQSLOD
type: SiteQuality
SIO_000300: -2.091e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

DP
type: SiteQuality
SIO_000300: 8.73301e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.668e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.421142661648991e-4
allele num: 5846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.931362479346224e-5
allele num: 44786
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.514986376021798e-5
allele num: 11744
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.108e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 8.78417e5

FS
type: SiteQuality
SIO_000300: 8.01e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6882
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.448800270361608e-5
allele num: 11836
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.12043e5

MQRankSum
type: SiteQuality
SIO_000300: 2.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.723e0

VQSLOD
type: SiteQuality
SIO_000300: -8.665e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

QD
type: SiteQuality
SIO_000300: 1.123e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.445945945945946e-5
allele num: 11840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
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East Asian
type: Population
allele count: 1
allele frequency: 1.664447403462051e-4
allele num: 6008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45284
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.085e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.093999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

DP
type: SiteQuality
SIO_000300: 9.21817e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.05e-1

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.757e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6924
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East Asian
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allele count: 1
allele frequency: 1.663893510815308e-4
allele num: 6010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11862
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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Other
type: Population
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FS
type: SiteQuality
SIO_000300: 5.74e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1070
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 8.401949252226517e-5
allele num: 11902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5304
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Latino
type: Population
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allele frequency: 0.0e0
allele num: 7000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5960
num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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FS
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DP
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4905
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3764
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17435
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.864975755315181e-4
allele num: 5362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

QD
type: SiteQuality
SIO_000300: 3.74e0

FS
type: SiteQuality
SIO_000300: 2.035e0

VQSLOD
type: SiteQuality
SIO_000300: -2.448e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

DP
type: SiteQuality
SIO_000300: 9.87105e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

MQ
type: SiteQuality
SIO_000300: 5.824e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-1