14-89656767-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656767
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656767
    reference: chr 14
allele count: 1
allele frequency: 8.330001332800213e-6
allele num: 120048
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9617A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.253A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.772A>G
  hgvsp: ENSP00000343288.4:p.Met258Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.772A>G
  hgvsp: ENSP00000261302.5:p.Met258Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9617A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.321A>G
  hgvsp: ENSP00000450833.1:p.Met108Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.325A>G
  hgvsp: ENSP00000452444.1:p.Met109Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9617A>G
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19080
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met258Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

14-89656770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656770
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656770
    reference: chr 14
allele count: 1
allele frequency: 8.332361224523806e-6
allele num: 120014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.318G>A
  hgvsp: ENSP00000450833.1:p.Ala107Thr
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9620G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9620G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.250G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.322G>A
  hgvsp: ENSP00000452444.1:p.Ala108Thr
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.769G>A
  hgvsp: ENSP00000343288.4:p.Ala257Thr
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.769G>A
  hgvsp: ENSP00000261302.5:p.Ala257Thr
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9620G>A
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6594
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala257Thr
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

14-89656772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656772
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656772
    reference: chr 14
allele count: 22
allele frequency: 1.833700073348003e-4
allele num: 119976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9622G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.320G>A
  hgvsp: ENSP00000452444.1:p.Ser107Asn
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.316G>A
  hgvsp: ENSP00000450833.1:p.Ser106Asn
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9622G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.248G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9622G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.767G>A
  hgvsp: ENSP00000261302.5:p.Ser256Asn
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.767G>A
  hgvsp: ENSP00000343288.4:p.Ser256Asn
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24969
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19106
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser256Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

14-89656784-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656784
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656784
    reference: chr 14
allele count: 2
allele frequency: 1.67238063383226e-5
allele num: 119590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.755T>C
  hgvsp: ENSP00000261302.5:p.Ile252Thr
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9634T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.304T>C
  hgvsp: ENSP00000450833.1:p.Ile102Thr
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.236T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.755T>C
  hgvsp: ENSP00000343288.4:p.Ile252Thr
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9634T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.308T>C
  hgvsp: ENSP00000452444.1:p.Ile103Thr
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9634T>C
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42480
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile252Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

14-89656785-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656785
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656785
    reference: chr 14
allele count: 14
allele frequency: 1.171979641039378e-4
allele num: 119456
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.754A>G
  hgvsp: ENSP00000261302.5:p.Ile252Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.303A>G
  hgvsp: ENSP00000450833.1:p.Ile102Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.754A>G
  hgvsp: ENSP00000343288.4:p.Ile252Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.235A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.307A>G
  hgvsp: ENSP00000452444.1:p.Ile103Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9635A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9635A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9635A>G
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8170
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19116
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3768
  bin: 9.75e1
  variant carriers: 12
hgvs: p.Ile252Val
num of homozygotes: 1
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

14-89656789-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656789
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656789
    reference: chr 14
allele count: 1
allele frequency: 8.385462961410099e-6
allele num: 119254
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.750T>C
  hgvsp: ENST00000345097.4:c.750T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.750T>C
  hgvsp: ENST00000261302.5:c.750T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9639T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.231T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9639T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.303T>C
  hgvsp: ENST00000553353.1:c.303T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9639T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.299T>C
  hgvsp: ENST00000553840.1:c.299T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41608
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro250Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS

14-89656802-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656802
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656802
    reference: chr 14
allele count: 1
allele frequency: 8.456230550669733e-6
allele num: 118256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-9T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-9T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9652T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-9T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-9T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9652T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.227-9T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9652T>A
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21112
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38760
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3756
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/14-89656808-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656808
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656808
    reference: chr 14
allele count: 1
allele frequency: 8.5090451149572e-6
allele num: 117522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9658G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9658G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-15G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-15G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-15G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-15G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.227-15G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9658G>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

14-89656808-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656808
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656808
    reference: chr 14
allele count: 1
allele frequency: 8.5090451149572e-6
allele num: 117522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-15G>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9658G>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-15G>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-15G>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.227-15G>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-15G>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9658G>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9658G>C
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5998
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

14-89656828-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656828
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656828
    reference: chr 14
allele count: 1
allele frequency: 8.731336767659129e-6
allele num: 114530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-35T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9678T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-35T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9678T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.227-35T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9678T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-35T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-35T>A
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8826
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4879
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

14-89656830-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656830
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656830
    reference: chr 14
allele count: 32
allele frequency: 2.815662120545535e-4
allele num: 113650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9680G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.227-37G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-37G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-37G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9680G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-37G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-37G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9680G>A
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11020
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11295
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9561
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12824
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5904
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5927
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/14-89656830-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656830
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656830
    reference: chr 14
allele count: 2
allele frequency: 1.759788825340959e-5
allele num: 113650
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9680G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9680G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-37G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.227-37G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9680G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-37G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-37G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-37G>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12824
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11020
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9011
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4263
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5927
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3778
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

14-89656831-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656831
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656831
    reference: chr 14
allele count: 2
allele frequency: 1.7627046940826e-5
allele num: 113462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9681C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-38C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-38C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.227-38C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9681C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-38C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9681C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-38C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10778
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6093
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4253
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

14-89656836-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656836
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656836
    reference: chr 14
allele count: 3
allele frequency: 2.681396471282244e-5
allele num: 111882
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9686G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-43G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.227-43G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9686G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9686G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-43G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-43G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-43G>A
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9309
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4853
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP

14-89656837-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656837
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656837
    reference: chr 14
allele count: 15
allele frequency: 1.723226799623188e-4
allele num: 87046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9687C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9687C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-44C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-44C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9687C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.227-44C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-44C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-44C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10026
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11892
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8251
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15163
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4907
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2806
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8127
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

14-89656837-G-GGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656837
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656839
    reference: chr 14
allele count: 46
allele frequency: 5.284562185511109e-4
allele num: 87046
alternate allele: GGT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-46_295-45dupAC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9689_*151-9688dupAC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9689_746-9688dupAC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9689_746-9688dupAC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-46_746-45dupAC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.227-46_227-45dupAC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-46_299-45dupAC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-46_746-45dupAC
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15163
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11892
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10026
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8251
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4571
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3472
  bin: 9.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 8127
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5634
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

14-89656837-GGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656837
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656835
    reference: chr 14
allele count: 1660
allele frequency: 1.907037658249661e-2
allele num: 87046
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-46_746-45delAC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-46_746-45delAC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9689_*151-9688delAC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.227-46_227-45delAC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9689_746-9688delAC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9689_746-9688delAC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-46_299-45delAC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-46_295-45delAC
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15163
  bin: 1.75e1
  variant carriers: 551
genotype depth: GenotypeDepth
  all individuals: 10026
  bin: 1.25e1
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 8251
  bin: 2.75e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 3.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 3.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11892
  bin: 2.25e1
  variant carriers: 472
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5634
  bin: 3.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 4571
  bin: 2.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 4907
  bin: 3.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 5.25e1
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 8127
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 9.25e1
  variant carriers: 62
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: GGT
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

14-89656839-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656839
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656839
    reference: chr 14
allele count: 10
allele frequency: 1.168278891536988e-4
allele num: 85596
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-46A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9689A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-46A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.227-46A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9689A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-46A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-46A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9689A>G
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12019
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9751
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14802
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7401
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8064
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4816
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5841
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3666
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4249
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2720
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

14-89656842-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89656842
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89656842
    reference: chr 14
allele count: 3
allele frequency: 2.737426089495584e-5
allele num: 109592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-49C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-9692C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555010
  gene symbol: FOXN3
  hgvsc: ENST00000555010.1:n.227-49C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-9692C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-49C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-49C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-49C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-9692C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12484
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6804
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8353
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4317
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7407
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff

14-89697166-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89697166
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89697166
    reference: chr 14
allele count: 5
allele frequency: 4.658963846440551e-4
allele num: 10732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.*38G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-40373G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-40373G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-50016G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-40373G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-40373G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-50016G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-50016G>A
  variant of: http://identifiers.org/hgnc/1928
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

14-89697183-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89697183
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89697184
    reference: chr 14
allele count: 1
allele frequency: 9.314456035767511e-5
allele num: 10736
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-40391dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-40391dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-50034dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.*20dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-40391dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-50034dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-40391dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-50034dupG
  variant of: http://identifiers.org/hgnc/1928
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

14-89697219-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89697219
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89697219
    reference: chr 14
allele count: 1
allele frequency: 9.314456035767511e-5
allele num: 10736
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*151-50069T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-40426T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.746-50069T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.746-50069T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-40426T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.328-8T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-40426T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-40426T>C
  variant of: http://identifiers.org/hgnc/1928
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: c.328-8T>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD

14-89697237-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89697237
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89697237
    reference: chr 14
allele count: 1
allele frequency: 9.324878776575905e-5
allele num: 10724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.746-40444A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.295-40444A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.299-40444A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+50057A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+50057A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.328-26A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.746-40444A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+50057A>G
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

14-89747244-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747244
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747244
    reference: chr 14
allele count: 1
allele frequency: 9.249324799289653e-6
allele num: 108116
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+50C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+50C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+50C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+50C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+50C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+50C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+50C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+50C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+50C>G
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14791
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5067
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4561
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3450
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

14-89747246-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747246
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747246
    reference: chr 14
allele count: 2
allele frequency: 1.875785485171916e-5
allele num: 106622
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+48G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+48G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+48G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+48G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+48G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+48G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+48G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+48G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+48G>A
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14202
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

14-89747247-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747247
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747247
    reference: chr 14
allele count: 8
allele frequency: 7.385933489668925e-5
allele num: 108314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+47C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+47C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+47C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+47C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+47C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+47C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+47C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+47C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+47C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13140
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8951
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14100
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5542
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5516
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

14-89747249-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747249
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747249
    reference: chr 14
allele count: 1
allele frequency: 9.164726799494107e-6
allele num: 109114
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+45C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+45C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+45C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+45C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+45C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+45C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+45C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+45C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+45C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15220
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3708
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7047
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

14-89747250-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747250
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747249
    reference: chr 14
allele count: 1
allele frequency: 9.344921035417251e-6
allele num: 107010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+43delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+43delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+43delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+43delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+43delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+43delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+43delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+43delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+43delC
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 9286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17862
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5387
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4053
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: TG
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

14-89747256-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747256
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747257
    reference: chr 14
allele count: 9
allele frequency: 8.19254296533644e-5
allele num: 109856
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+37dupC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+37dupC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+37dupC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+37dupC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+37dupC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+37dupC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+37dupC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+37dupC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+37dupC
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18973
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11257
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3890
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

14-89747256-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747256
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747255
    reference: chr 14
allele count: 24
allele frequency: 2.184678124089717e-4
allele num: 109856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+37delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+37delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+37delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+37delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+37delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+37delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+37delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+37delC
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+37delC
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10802
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18973
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11257
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3413
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: AG
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

14-89747258-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747258
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747258
    reference: chr 14
allele count: 367
allele frequency: 3.32934175194136e-3
allele num: 110232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+36C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+36C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+36C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+36C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+36C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+36C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+36C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+36C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+36C>G
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10614
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 3.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 4856
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20412
  bin: 2.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 1.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11240
  bin: 2.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4654
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 9.75e1
  variant carriers: 351
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 3
num of homozygotes: 4
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

14-89747263-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747263
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747263
    reference: chr 14
allele count: 39
allele frequency: 3.512121321278052e-4
allele num: 111044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+31C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+31C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+31C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+31C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+31C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+31C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+31C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+31C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+31C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12292
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22942
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3925
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6419
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

14-89747264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747264
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747264
    reference: chr 14
allele count: 3
allele frequency: 2.695272492048946e-5
allele num: 111306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+30C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+30C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+30C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+30C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+30C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+30C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+30C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+30C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+30C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6341
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

14-89747267-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747267
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747267
    reference: chr 14
allele count: 10
allele frequency: 8.952230895939268e-5
allele num: 111704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+27C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+27C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+27C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+27C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+27C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+27C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+27C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+27C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+27C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12874
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25175
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

14-89747274-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747274
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747274
    reference: chr 14
allele count: 1
allele frequency: 8.870753126940477e-6
allele num: 112730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+20C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+20C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+20C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+20C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+20C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+20C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+20C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+20C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+20C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37752
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

14-89747274-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747274
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747274
    reference: chr 14
allele count: 1
allele frequency: 8.870753126940477e-6
allele num: 112730
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+20C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+20C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+20C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+20C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+20C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+20C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+20C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+20C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+20C>G
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13563
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5434
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

14-89747275-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747275
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747275
    reference: chr 14
allele count: 1
allele frequency: 8.863519526333516e-6
allele num: 112822
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+19C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+19C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+19C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+19C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+19C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+19C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+19C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+19C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+19C>G
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/14-89747288-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747288
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747289
    reference: chr 14
allele count: 1
allele frequency: 8.731184297838158e-6
allele num: 114532
alternate allele: AC
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+5dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+5dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+5dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+5dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+5dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+5dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+5dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+5dupG
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+5dupG
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 3.25e1
  variant carriers: 0
hgvs: c.745+5dupG
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

14-89747288-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747288
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747288
    reference: chr 14
allele count: 3
allele frequency: 2.619355289351447e-5
allele num: 114532
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+6T>C
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31082
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15178
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4264
  bin: 2.25e1
  variant carriers: 0
hgvs: c.745+6T>C
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

14-89747288-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747288
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747288
    reference: chr 14
allele count: 1
allele frequency: 8.731184297838158e-6
allele num: 114532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+6T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+6T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+6T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+6T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+6T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+6T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+6T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+6T>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+6T>A
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15178
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
hgvs: c.745+6T>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/14-89747290-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747290
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747290
    reference: chr 14
allele count: 4
allele frequency: 3.486021055567176e-5
allele num: 114744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*150+4G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.745+4G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.327+4G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.185+4G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.745+4G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.294+4G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.745+4G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.745+4G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.298+4G>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15322
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
hgvs: c.745+4G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

14-89747304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747304
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747304
    reference: chr 14
allele count: 20
allele frequency: 1.728907330567082e-4
allele num: 115680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.735C>T
  hgvsp: ENST00000557258.1:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.175C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.284C>T
  hgvsp: ENST00000553840.1:c.284C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.735C>T
  hgvsp: ENST00000345097.4:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.735C>T
  hgvsp: ENST00000555353.1:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*140C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.317C>T
  hgvsp: ENST00000556916.1:c.317C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.288C>T
  hgvsp: ENST00000553353.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*164C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.735C>T
  hgvsp: ENST00000261302.5:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16044
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala245Ala
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

14-89747306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747306
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747306
    reference: chr 14
allele count: 25
allele frequency: 2.161433116613639e-4
allele num: 115664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.733G>A
  hgvsp: ENSP00000452005.1:p.Ala245Thr
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.733G>A
  hgvsp: ENSP00000261302.5:p.Ala245Thr
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.733G>A
  hgvsp: ENSP00000452227.1:p.Ala245Thr
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*162G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*138G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.173G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.286G>A
  hgvsp: ENSP00000452444.1:p.Ala96Thr
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.733G>A
  hgvsp: ENSP00000343288.4:p.Ala245Thr
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.282G>A
  hgvsp: ENSP00000450833.1:p.Ala95Thr
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.315G>A
  hgvsp: ENSP00000450684.1:p.Ala106Thr
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16185
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 31820
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala245Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

14-89747334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747334
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747334
    reference: chr 14
allele count: 1
allele frequency: 8.769160615945842e-6
allele num: 114036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.705G>A
  hgvsp: ENST00000557258.1:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.258G>A
  hgvsp: ENST00000553353.1:c.258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.705G>A
  hgvsp: ENST00000555353.1:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.705G>A
  hgvsp: ENST00000345097.4:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.254G>A
  hgvsp: ENST00000553840.1:c.254G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*134G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.287G>A
  hgvsp: ENST00000556916.1:c.287G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*110G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.705G>A
  hgvsp: ENST00000261302.5:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.145G>A
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro235Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ

14-89747335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747335
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747335
    reference: chr 14
allele count: 2
allele frequency: 1.759541111678075e-5
allele num: 113666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.144C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*109C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.253C>T
  hgvsp: ENSP00000450833.1:p.Pro85Leu
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.704C>T
  hgvsp: ENSP00000452227.1:p.Pro235Leu
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.704C>T
  hgvsp: ENSP00000261302.5:p.Pro235Leu
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*133C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.286C>T
  hgvsp: ENSP00000450684.1:p.Pro96Leu
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.257C>T
  hgvsp: ENSP00000452444.1:p.Pro86Leu
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.704C>T
  hgvsp: ENSP00000452005.1:p.Pro235Leu
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.704C>T
  hgvsp: ENSP00000343288.4:p.Pro235Leu
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro235Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

14-89747336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747336
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747336
    reference: chr 14
allele count: 1
allele frequency: 8.795693628399536e-6
allele num: 113692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.703C>T
  hgvsp: ENSP00000261302.5:p.Pro235Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.252C>T
  hgvsp: ENSP00000450833.1:p.Pro85Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.703C>T
  hgvsp: ENSP00000343288.4:p.Pro235Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.703C>T
  hgvsp: ENSP00000452227.1:p.Pro235Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.285C>T
  hgvsp: ENSP00000450684.1:p.Pro96Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*108C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*132C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.256C>T
  hgvsp: ENSP00000452444.1:p.Pro86Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.143C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.703C>T
  hgvsp: ENSP00000452005.1:p.Pro235Ser
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41033
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro235Ser
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD

14-89747342-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747342
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747342
    reference: chr 14
allele count: 1
allele frequency: 8.896955461840959e-6
allele num: 112398
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.697A>G
  hgvsp: ENSP00000343288.4:p.Ile233Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.279A>G
  hgvsp: ENSP00000450684.1:p.Ile94Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.250A>G
  hgvsp: ENSP00000452444.1:p.Ile84Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.697A>G
  hgvsp: ENSP00000452227.1:p.Ile233Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.697A>G
  hgvsp: ENSP00000261302.5:p.Ile233Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.246A>G
  hgvsp: ENSP00000450833.1:p.Ile83Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.697A>G
  hgvsp: ENSP00000452005.1:p.Ile233Val
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*102A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*126A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.137A>G
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile233Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

14-89747343-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747343
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747343
    reference: chr 14
allele count: 1
allele frequency: 8.904085194287139e-6
allele num: 112308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.245C>T
  hgvsp: ENST00000553840.1:c.245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.696C>T
  hgvsp: ENST00000261302.5:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.136C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*101C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.249C>T
  hgvsp: ENST00000553353.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*125C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.696C>T
  hgvsp: ENST00000345097.4:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.696C>T
  hgvsp: ENST00000555353.1:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.696C>T
  hgvsp: ENST00000557258.1:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.278C>T
  hgvsp: ENST00000556916.1:c.278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro232Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

14-89747344-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747344
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747344
    reference: chr 14
allele count: 4
allele frequency: 3.561507229859677e-5
allele num: 112312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.135C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*124C>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.248C>G
  hgvsp: ENSP00000452444.1:p.Pro83Arg
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.695C>G
  hgvsp: ENSP00000452005.1:p.Pro232Arg
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.695C>G
  hgvsp: ENSP00000261302.5:p.Pro232Arg
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.244C>G
  hgvsp: ENSP00000450833.1:p.Pro82Arg
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.277C>G
  hgvsp: ENSP00000450684.1:p.Pro93Arg
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.695C>G
  hgvsp: ENSP00000452227.1:p.Pro232Arg
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.695C>G
  hgvsp: ENSP00000343288.4:p.Pro232Arg
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*100C>G
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26984
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro232Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

14-89747345-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747345
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747345
    reference: chr 14
allele count: 1
allele frequency: 8.917424647761727e-6
allele num: 112140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.694C>T
  hgvsp: ENSP00000452005.1:p.Pro232Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.243C>T
  hgvsp: ENSP00000450833.1:p.Pro82Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.247C>T
  hgvsp: ENSP00000452444.1:p.Pro83Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.694C>T
  hgvsp: ENSP00000261302.5:p.Pro232Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*99C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.694C>T
  hgvsp: ENSP00000343288.4:p.Pro232Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.276C>T
  hgvsp: ENSP00000450684.1:p.Pro93Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.134C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*123C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.694C>T
  hgvsp: ENSP00000452227.1:p.Pro232Ser
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro232Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

14-89747349-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747349
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747349
    reference: chr 14
allele count: 1
allele frequency: 9.020060614807331e-6
allele num: 110864
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.690T>C
  hgvsp: ENST00000345097.4:c.690T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.690T>C
  hgvsp: ENST00000555353.1:c.690T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.243T>C
  hgvsp: ENST00000553353.1:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.690T>C
  hgvsp: ENST00000261302.5:c.690T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*119T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.239T>C
  hgvsp: ENST00000553840.1:c.239T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*95T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.690T>C
  hgvsp: ENST00000557258.1:c.690T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.272T>C
  hgvsp: ENST00000556916.1:c.272T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.130T>C
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly230Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

14-89747351-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747351
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747351
    reference: chr 14
allele count: 1
allele frequency: 9.103322712790168e-6
allele num: 109850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.270G>A
  hgvsp: ENSP00000450684.1:p.Gly91Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.241G>A
  hgvsp: ENSP00000452444.1:p.Gly81Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.237G>A
  hgvsp: ENSP00000450833.1:p.Gly80Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.128G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.688G>A
  hgvsp: ENSP00000343288.4:p.Gly230Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.688G>A
  hgvsp: ENSP00000452227.1:p.Gly230Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.688G>A
  hgvsp: ENSP00000452005.1:p.Gly230Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.688G>A
  hgvsp: ENSP00000261302.5:p.Gly230Ser
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*93G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*117G>A
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34985
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly230Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP

14-89747352-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747352
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747352
    reference: chr 14
allele count: 1
allele frequency: 9.113610265570603e-6
allele num: 109726
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.687A>G
  hgvsp: ENST00000345097.4:c.687A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.687A>G
  hgvsp: ENST00000261302.5:c.687A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*116A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.236A>G
  hgvsp: ENST00000553840.1:c.236A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.687A>G
  hgvsp: ENST00000557258.1:c.687A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.240A>G
  hgvsp: ENST00000553353.1:c.240A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.269A>G
  hgvsp: ENST00000556916.1:c.269A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*92A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.687A>G
  hgvsp: ENST00000555353.1:c.687A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.127A>G
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23727
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser229Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

14-89747356-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747356
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747356
    reference: chr 14
allele count: 1
allele frequency: 9.191345429143918e-6
allele num: 108798
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.232C>T
  hgvsp: ENSP00000450833.1:p.Thr78Ile
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.683C>T
  hgvsp: ENSP00000452005.1:p.Thr228Ile
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*88C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.265C>T
  hgvsp: ENSP00000450684.1:p.Thr89Ile
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.683C>T
  hgvsp: ENSP00000261302.5:p.Thr228Ile
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.236C>T
  hgvsp: ENSP00000452444.1:p.Thr79Ile
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.683C>T
  hgvsp: ENSP00000343288.4:p.Thr228Ile
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.683C>T
  hgvsp: ENSP00000452227.1:p.Thr228Ile
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*112C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.123C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22563
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr228Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

14-89747358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747358
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747358
    reference: chr 14
allele count: 1
allele frequency: 9.256687957048968e-6
allele num: 108030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.234C>T
  hgvsp: ENST00000553353.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.681C>T
  hgvsp: ENST00000555353.1:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.681C>T
  hgvsp: ENST00000261302.5:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.681C>T
  hgvsp: ENST00000557258.1:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.121C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*110C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.230C>T
  hgvsp: ENST00000553840.1:c.230C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.263C>T
  hgvsp: ENST00000556916.1:c.263C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.681C>T
  hgvsp: ENST00000345097.4:c.681C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*86C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.681C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

14-89747361-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747361
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747361
    reference: chr 14
allele count: 2
allele frequency: 1.868320753306928e-5
allele num: 107048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.681-3C>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.263-3C>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*86-3C>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.681-3C>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.681-3C>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.681-3C>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.121-3C>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.230-3C>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*110-3C>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.234-3C>A
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20198
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
hgvs: c.681-3C>A
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

14-89747364-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747364
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747364
    reference: chr 14
allele count: 39
allele frequency: 3.676401274485775e-4
allele num: 106082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.681-6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.263-6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.681-6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.234-6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.121-6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*110-6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.230-6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.681-6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.681-6T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*86-6T>C
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12039
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7214
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18674
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13631
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 3.25e1
  variant carriers: 0
hgvs: c.681-6T>C
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

14-89747381-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747381
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747381
    reference: chr 14
allele count: 1
allele frequency: 9.867771857114663e-6
allele num: 101340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.681-23T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.230-23T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*86-23T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.263-23T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.234-23T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*110-23T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.121-23T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.681-23T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.681-23T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.681-23T>C
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

14-89747391-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747391
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747391
    reference: chr 14
allele count: 1
allele frequency: 1.026441123337165e-5
allele num: 97424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*110-33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.681-33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.263-33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.234-33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.681-33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.681-33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.681-33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*86-33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.121-33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.230-33C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19948
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

14-89747394-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747394
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747394
    reference: chr 14
allele count: 896
allele frequency: 9.460857812598991e-3
allele num: 94706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.681-36G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.121-36G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*86-36G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.681-36G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.681-36G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.263-36G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.230-36G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*110-36G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.234-36G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.681-36G>A
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 21414
  bin: 1.25e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 2.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 3.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 10794
  bin: 7.5e0
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10865
  bin: 1.75e1
  variant carriers: 260
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 2.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 18519
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 5.25e1
  variant carriers: 7
num of homozygotes: 4
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

14-89747396-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747396
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747396
    reference: chr 14
allele count: 1
allele frequency: 1.055008123562552e-5
allele num: 94786
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.681-38A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.681-38A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*86-38A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.681-38A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*110-38A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.121-38A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.230-38A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.681-38A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.263-38A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.234-38A>G
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21512
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5951
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7541
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

14-89747400-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747400
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747400
    reference: chr 14
allele count: 1
allele frequency: 1.086271698277173e-5
allele num: 92058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.263-42G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.681-42G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*86-42G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*110-42G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.681-42G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.681-42G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.234-42G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.230-42G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.121-42G>A
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.681-42G>A
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/14-89747410-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89747410
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89747410
    reference: chr 14
allele count: 1
allele frequency: 1.168470005374962e-5
allele num: 85582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.263-52G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*86-52G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.681-52G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.681-52G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.234-52G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.681-52G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.230-52G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*110-52G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.681-52G>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.121-52G>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11029
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5839
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

14-89750819-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89750819
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89750819
    reference: chr 14
allele count: 3679
allele frequency: 3.413434774540731e-1
allele num: 10778
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.681-3461T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.263-3461T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*110-3461T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*38T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.681-3461T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.121-3461T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.230-3461T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.681-3461T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.234-3461T>C
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.681-3461T>C
  variant of: http://identifiers.org/hgnc/1928
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.75e1
  variant carriers: 337
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 3.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 304
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 6.75e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 3.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 272
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 2.5e0
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 6.25e1
  variant carriers: 368
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.25e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 215
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 651
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/14-89750855-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89750855
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89750855
    reference: chr 14
allele count: 1
allele frequency: 9.28332714444857e-5
allele num: 10772
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.681-3497T>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.*2T>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.263-3497T>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*110-3497T>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.681-3497T>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.230-3497T>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.681-3497T>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.681-3497T>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.121-3497T>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.234-3497T>G
  variant of: http://identifiers.org/hgnc/1928
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

14-89750871-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89750871
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89750871
    reference: chr 14
allele count: 3
allele frequency: 2.786550250789523e-4
allele num: 10766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.121-3513C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.263-3513C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.681-3513C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*110-3513C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.681-3513C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.222-5C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.234-3513C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.681-3513C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.230-3513C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.681-3513C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4775
  bin: 9.75e1
  variant carriers: 3
hgvs: c.222-5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP

14-89750887-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89750887
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89750887
    reference: chr 14
allele count: 1
allele frequency: 9.288500835965076e-5
allele num: 10766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.121-3529A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.230-3529A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.681-3529A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.263-3529A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.681-3529A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.681-3529A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*110-3529A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.234-3529A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.222-21A>G
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.681-3529A>G
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

14-89799555-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89799555
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89799555
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 8
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.229+17461C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.233+17461C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.*12C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.120+17461C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.680+17461C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.262+17461C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.680+17461C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.680+17461C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.680+17461C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.221+17461C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3786
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/14-89799616-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89799616
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89799617
    reference: chr 14
allele count: 0
allele frequency: 0.0e0
allele num: 2
alternate allele: CA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.680+17399dupT
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.233+17399dupT
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.680+17399dupT
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.680+17399dupT
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.680+17399dupT
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.120+17399dupT
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.262+17399dupT
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.240-14dupT
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.229+17399dupT
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.221+17399dupT
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 2.5e0
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 68
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP

14-89816983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89816983
    reference: chr 14
  end: Position
    type: ExactPosition
    position: 89816983
    reference: chr 14
allele count: 8
allele frequency: 7.039898625459793e-5
allele num: 113638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452227
  ensembl transcript: ENST00000555353
  gene symbol: FOXN3
  hgvsc: ENST00000555353.1:c.680+33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451024
  ensembl transcript: ENST00000554005
  gene symbol: FOXN3
  hgvsc: ENST00000554005.1:c.239+33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452005
  ensembl transcript: ENST00000557258
  gene symbol: FOXN3
  hgvsc: ENST00000557258.1:c.680+33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000557261
  gene symbol: FOXN3
  hgvsc: ENST00000557261.1:n.396+33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000261302
  ensembl transcript: ENST00000261302
  gene symbol: FOXN3
  hgvsc: ENST00000261302.5:c.680+33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000258752
  ensembl transcript: ENST00000555407
  gene symbol: RP11-356K23.1
  hgvsc: ENST00000555407.1:n.209+146G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450684
  ensembl transcript: ENST00000556916
  gene symbol: FOXN3
  hgvsc: ENST00000556916.1:c.262+33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl transcript: ENST00000555658
  gene symbol: FOXN3
  hgvsc: ENST00000555658.1:n.120+33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000450833
  ensembl transcript: ENST00000553840
  gene symbol: FOXN3
  hgvsc: ENST00000553840.1:c.229+33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000258752
  ensembl transcript: ENST00000556942
  gene symbol: RP11-356K23.1
  hgvsc: ENST00000556942.1:n.192+146G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000343288
  ensembl transcript: ENST00000345097
  gene symbol: FOXN3
  hgvsc: ENST00000345097.4:c.680+33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000452444
  ensembl transcript: ENST00000553353
  gene symbol: FOXN3
  hgvsc: ENST00000553353.1:c.233+33C>T
  variant of: http://identifiers.org/hgnc/1928
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000053254
  ensembl protein: ENSP00000451437
  ensembl transcript: ENST00000557718
  gene symbol: FOXN3
  hgvsc: ENST00000557718.1:c.221+33C>T
  variant of: http://identifiers.org/hgnc/1928
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 88
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43332
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6611
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510802235987309e-5
allele num: 66190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.464e0

MQRankSum
type: SiteQuality
SIO_000300: -3.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

DP
type: SiteQuality
SIO_000300: 1.768891e6

QD
type: SiteQuality
SIO_000300: 1.197e1

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1738
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023751023751024e-4
allele num: 9768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66166
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.935e0

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

QD
type: SiteQuality
SIO_000300: 1.194e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.25e-1

FS
type: SiteQuality
SIO_000300: 3.517e0

DP
type: SiteQuality
SIO_000300: 1.768494e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3775
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 43150
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6603
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.326277592984578e-4
allele num: 66140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

QD
type: SiteQuality
SIO_000300: 1.148e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.78e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 1.768351e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3756
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.097560975609756e-5
allele num: 16400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.75943e6

QD
type: SiteQuality
SIO_000300: 1.281e1

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

FS
type: SiteQuality
SIO_000300: 1.584e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e0

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1738
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41957
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.539709649871904e-4
allele num: 16394
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

DP
type: SiteQuality
SIO_000300: 1.756254e6

QD
type: SiteQuality
SIO_000300: 1.152e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.182e0

FS
type: SiteQuality
SIO_000300: 1.168e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.11e-2

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
all individuals: 1731
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6464
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3756
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523693432881304e-5
allele num: 65630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.75091e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.62e-1

QD
type: SiteQuality
SIO_000300: 7.2e0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 5.05e0

GenotypeQuality
all individuals: 316
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6188
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537420822827624e-5
allele num: 65044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.719565e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.241e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5998
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4823
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3756
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 548
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548035542896065e-5
allele num: 64598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
SIO_000300: 8.26e0

DP
type: SiteQuality
SIO_000300: 1.696309e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: -8.351e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.545e1

GenotypeQuality
all individuals: 465
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3756
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36169
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.199616122840691e-4
allele num: 8336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

VQSLOD
type: SiteQuality
SIO_000300: -8.351e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

FS
type: SiteQuality
SIO_000300: 8.26e0

QD
type: SiteQuality
SIO_000300: 1.545e1

DP
type: SiteQuality
SIO_000300: 1.696309e6

GenotypeQuality
all individuals: 1555
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4462
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5668
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17240
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3749
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1494
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62778
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.341958396752917e-5
allele num: 15768
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 2.292e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.059e0

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.133e0

DP
type: SiteQuality
SIO_000300: 1.522862e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.863e0

QD
type: SiteQuality
SIO_000300: 2.383e1

GenotypeQuality
all individuals: 2486
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3778
bin: 9.75e1
variant carriers: 32

GenotypeQuality
all individuals: 4101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9011
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14820
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.267105930055753e-4
allele num: 7892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.157407407407407e-3
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.409171075837742e-4
allele num: 11340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 3.05044472273063e-4
allele num: 62286
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.830928361639637e-4
allele num: 15662
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

VQSLOD
type: SiteQuality
SIO_000300: 5.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.50679e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

QD
type: SiteQuality
SIO_000300: 1.281e1

GenotypeQuality
all individuals: 5210
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14820
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.21099444497961e-5
allele num: 62286
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.21e0

QD
type: SiteQuality
SIO_000300: 1.281e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.50679e6

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
all individuals: 135
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2214
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5377
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 673
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variant carriers: 0

GenotypeQuality
all individuals: 9127
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2666
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variant carriers: 0

GenotypeQuality
all individuals: 14095
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9198
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.271940981938438e-4
allele num: 7862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.608958681941048e-5
allele num: 62152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.1756e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.575e0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

DP
type: SiteQuality
SIO_000300: 1.498002e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.224e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

GenotypeQuality
all individuals: 214
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6791
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9010
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9915
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variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3412
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3745
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 966
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.217294900221729e-4
allele num: 9020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632919660352711e-5
allele num: 61240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.122e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

QD
type: SiteQuality
SIO_000300: 8.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.468393e6

GenotypeQuality
all individuals: 4571
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2039
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5986
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5634
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8187
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 910
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.698439056791764e-4
allele num: 48176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5590
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.81214848143982e-4
allele num: 7112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.02e-2

DP
type: SiteQuality
SIO_000300: 1.441499e6

VQSLOD
type: SiteQuality
SIO_000300: 9.28e-1

FS
type: SiteQuality
SIO_000300: 2.558e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

QD
type: SiteQuality
SIO_000300: 2.98e0

GenotypeQuality
all individuals: 2039
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2558
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5986
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4907
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 346
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 643
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2806
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2086
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.03786117568914e-4
allele num: 48176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 38
allele frequency: 7.137490608564989e-3
allele num: 5324
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.716443529007896e-4
allele num: 11652
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.501501501501501e-3
allele num: 666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5590
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

FS
type: SiteQuality
SIO_000300: 2.558e0

DP
type: SiteQuality
SIO_000300: 1.441499e6

QD
type: SiteQuality
SIO_000300: 2.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.02e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

GenotypeQuality
all individuals: 8187
bin: 2.25e1
variant carriers: 12

GenotypeQuality
all individuals: 2558
bin: 4.25e1
variant carriers: 77

GenotypeQuality
all individuals: 570
bin: 5.75e1
variant carriers: 146

GenotypeQuality
all individuals: 3472
bin: 9.75e1
variant carriers: 242

GenotypeQuality
all individuals: 3055
bin: 7.5e0
variant carriers: 8

GenotypeQuality
all individuals: 2086
bin: 6.75e1
variant carriers: 146

GenotypeQuality
all individuals: 5986
bin: 6.25e1
variant carriers: 190

GenotypeQuality
all individuals: 346
bin: 8.75e1
variant carriers: 64

GenotypeQuality
all individuals: 910
bin: 7.25e1
variant carriers: 145

GenotypeQuality
all individuals: 2806
bin: 4.75e1
variant carriers: 124

GenotypeQuality
all individuals: 643
bin: 8.25e1
variant carriers: 109

GenotypeQuality
all individuals: 916
bin: 7.75e1
variant carriers: 142

European (Finnish)
type: Population
allele count: 84
allele frequency: 1.577761081893313e-2
allele num: 5324
num of homozygotes: 0

South Asian
type: Population
allele count: 242
allele frequency: 2.076896670099554e-2
allele num: 11652
num of homozygotes: 0

East Asian
type: Population
allele count: 103
allele frequency: 1.84257602862254e-2
allele num: 5590
num of homozygotes: 0

African
type: Population
allele count: 123
allele frequency: 1.729471316085489e-2
allele num: 7112
num of homozygotes: 0

Latino
type: Population
allele count: 220
allele frequency: 2.580342481820314e-2
allele num: 8526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 875
allele frequency: 1.816257057455995e-2
allele num: 48176
num of homozygotes: 0

Other
type: Population
allele count: 13
allele frequency: 1.951951951951952e-2
allele num: 666
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.28e-1

FS
type: SiteQuality
SIO_000300: 2.558e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.02e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.98e0

DP
type: SiteQuality
SIO_000300: 1.441499e6

GenotypeQuality
all individuals: 336
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6495
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3432
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3182
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 787
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 585
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5090
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.112200067590402e-4
allele num: 47344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.56e-2

DP
type: SiteQuality
SIO_000300: 1.38976e6

MQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

QD
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SIO_000300: 1.209e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -1.622e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11048
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.666666666666667e-5
allele num: 60000
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7436
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8794
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.320306311064167e-4
allele num: 15148
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.185e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.007e0

DP
type: SiteQuality
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VQSLOD
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MQRankSum
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MQ
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SIO_000300: 6.0e1

QD
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.666666666666666e-4
allele num: 7500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2702
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.4281e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-2

MQ
type: SiteQuality
SIO_000300: 5.939e1

QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-2

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.82637e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.718e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
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allele frequency: 1.333333333333333e-4
allele num: 7500
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.922e1

VQSLOD
type: SiteQuality
SIO_000300: 4.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.89e-2

FS
type: SiteQuality
SIO_000300: 1.285e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.066e0

QD
type: SiteQuality
SIO_000300: 7.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

DP
type: SiteQuality
SIO_000300: 1.83166e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2710
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.334044823906083e-4
allele num: 7496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.62e-2

DP
type: SiteQuality
SIO_000300: 1.83039e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.619e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 9.59e-1

QD
type: SiteQuality
SIO_000300: 7.2e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.698224852071006e-4
allele num: 2704
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
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QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 7.197e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.08e-2

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -6.936e-1

DP
type: SiteQuality
SIO_000300: 1.82412e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.649566164098842e-5
allele num: 60622
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Other
type: Population
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8952
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
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DP
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MQ
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QD
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MQRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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Latino
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allele frequency: 2.047082906857728e-4
allele num: 9770
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European (Finnish)
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 59834
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

VQSLOD
type: SiteQuality
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MQ
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FS
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BaseQRankSum
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InbreedingCoeff
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DP
type: SiteQuality
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MQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
type: Population
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African
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allele frequency: 3.350457895912441e-4
allele num: 8954
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Latino
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allele num: 10006
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East Asian
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.647229360216117e-5
allele num: 60708
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European (Finnish)
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.633506485020745e-5
allele num: 61218
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South Asian
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East Asian
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DP
type: SiteQuality
SIO_000300: 1.259591e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.595e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.44e-1

QD
type: SiteQuality
SIO_000300: 7.98e0

GenotypeQuality
all individuals: 1002
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6736
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5389
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 7.5e0
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GenotypeQuality
all individuals: 3201
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3614
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.663506005256679e-5
allele num: 60114
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.263263e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

VQSLOD
type: SiteQuality
SIO_000300: -1.884e-1

FS
type: SiteQuality
SIO_000300: 1.3854e1

QD
type: SiteQuality
SIO_000300: 1.288e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
all individuals: 391
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24250
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3413
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 665
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4421
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.298996525184295e-4
allele num: 61586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5816
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.101806963420009e-4
allele num: 9076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14244
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.33e-1

FS
type: SiteQuality
SIO_000300: 6.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

QD
type: SiteQuality
SIO_000300: 1.205e1

DP
type: SiteQuality
SIO_000300: 1.305407e6

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4421
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 665
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 391
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 368
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variant carriers: 0

GenotypeQuality
all individuals: 2165
bin: 9.75e1
variant carriers: 21

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4993
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24250
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.234263144902493e-4
allele num: 8102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5816
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.956181533646322e-4
allele num: 10224
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.510249929795001e-4
allele num: 14244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.59799305036859e-4
allele num: 61586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.205e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

DP
type: SiteQuality
SIO_000300: 1.305407e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.41e0

FS
type: SiteQuality
SIO_000300: 6.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

GenotypeQuality
all individuals: 335
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3157
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 26838
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variant carriers: 0

GenotypeQuality
all individuals: 3947
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1637
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variant carriers: 1

GenotypeQuality
all individuals: 1087
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variant carriers: 1

GenotypeQuality
all individuals: 1118
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variant carriers: 1

GenotypeQuality
all individuals: 720
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variant carriers: 1

GenotypeQuality
all individuals: 254
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variant carriers: 1

GenotypeQuality
all individuals: 363
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variant carriers: 2

GenotypeQuality
all individuals: 3952
bin: 6.75e1
variant carriers: 1

East Asian
type: Population
allele count: 256
allele frequency: 3.147283009589378e-2
allele num: 8134
num of homozygotes: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.456546366726007e-4
allele num: 61790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.717032967032967e-4
allele num: 5824
num of homozygotes: 0

Latino
type: Population
allele count: 89
allele frequency: 8.671083398285269e-3
allele num: 10264
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9110
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 8.391608391608392e-4
allele num: 14300
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.376e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.1e0

DP
type: SiteQuality
SIO_000300: 1.323029e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

FS
type: SiteQuality
SIO_000300: 6.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

GenotypeQuality
all individuals: 364
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2155
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 1203
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
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variant carriers: 0

GenotypeQuality
all individuals: 938
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variant carriers: 1

GenotypeQuality
all individuals: 1133
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variant carriers: 1

GenotypeQuality
all individuals: 107
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variant carriers: 0

GenotypeQuality
all individuals: 298
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variant carriers: 0

GenotypeQuality
all individuals: 1187
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variant carriers: 0

GenotypeQuality
all individuals: 661
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variant carriers: 0

GenotypeQuality
all individuals: 4086
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variant carriers: 1

GenotypeQuality
all individuals: 3089
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607303587501607e-5
allele num: 62216
num of homozygotes: 0

South Asian
type: Population
allele count: 37
allele frequency: 2.568730908081089e-3
allele num: 14404
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.231527093596059e-3
allele num: 812
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.556e0

DP
type: SiteQuality
SIO_000300: 1.355251e6

FS
type: SiteQuality
SIO_000300: 2.868e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

GenotypeQuality
all individuals: 3733
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
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variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 806
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GenotypeQuality
all individuals: 217
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GenotypeQuality
all individuals: 367
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GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 4154
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GenotypeQuality
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GenotypeQuality
all individuals: 2869
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variant carriers: 0

GenotypeQuality
all individuals: 666
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variant carriers: 0

GenotypeQuality
all individuals: 299
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GenotypeQuality
all individuals: 31187
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.20666987333654e-5
allele num: 62370
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9214
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 1.609e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

QD
type: SiteQuality
SIO_000300: 9.27e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

DP
type: SiteQuality
SIO_000300: 1.361974e6

MQ
type: SiteQuality
SIO_000300: 5.913e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.234e0

GenotypeQuality
all individuals: 156
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
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variant carriers: 0

GenotypeQuality
all individuals: 2324
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GenotypeQuality
all individuals: 2353
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GenotypeQuality
all individuals: 33059
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GenotypeQuality
all individuals: 3227
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GenotypeQuality
all individuals: 716
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 825
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GenotypeQuality
all individuals: 834
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 4285
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14454
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.727626459143969e-4
allele num: 9252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.556574923547401e-5
allele num: 10464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.372e1

FS
type: SiteQuality
SIO_000300: 6.105e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.388e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

DP
type: SiteQuality
SIO_000300: 1.38055e6

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
all individuals: 445
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5434
bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 2120
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
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GenotypeQuality
all individuals: 445
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
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GenotypeQuality
all individuals: 1203
bin: 7.25e1
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GenotypeQuality
all individuals: 365
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GenotypeQuality
all individuals: 4474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584384308257811e-5
allele num: 63116
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 6.98e0

FS
type: SiteQuality
SIO_000300: 7.889e0

VQSLOD
type: SiteQuality
SIO_000300: -1.54e0

DP
type: SiteQuality
SIO_000300: 1.418969e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.775e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

GenotypeQuality
all individuals: 313
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.5e0
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GenotypeQuality
all individuals: 2137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 9.25e1
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GenotypeQuality
all individuals: 2120
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37752
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584384308257811e-5
allele num: 63116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9346
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 1.418969e6

FS
type: SiteQuality
SIO_000300: 7.889e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.775e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 6.98e0

VQSLOD
type: SiteQuality
SIO_000300: -1.54e0

GenotypeQuality
all individuals: 1325
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.582428711586543e-5
allele num: 63194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.420846e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

FS
type: SiteQuality
SIO_000300: 6.34e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.2e1

GenotypeQuality
all individuals: 326
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 364
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6076
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.18595825426945e-4
allele num: 8432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64096
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.004e1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 2.731e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

DP
type: SiteQuality
SIO_000300: 1.469978e6

MQ
type: SiteQuality
SIO_000300: 5.881e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

GenotypeQuality
all individuals: 41782
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 959
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variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.763154335181928e-5
allele num: 14786
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.858045336306206e-4
allele num: 10764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64096
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.004e1

MQ
type: SiteQuality
SIO_000300: 5.881e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 1.469978e6

FS
type: SiteQuality
SIO_000300: 2.731e0

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 364
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variant carriers: 0

GenotypeQuality
all individuals: 1018
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variant carriers: 0

GenotypeQuality
all individuals: 677
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41782
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4264
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10764
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.204819277108434e-3
allele num: 830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.004e1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

DP
type: SiteQuality
SIO_000300: 1.469978e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

FS
type: SiteQuality
SIO_000300: 2.731e0

MQ
type: SiteQuality
SIO_000300: 5.881e1

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 366
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GenotypeQuality
all individuals: 412
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1257
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variant carriers: 0

GenotypeQuality
all individuals: 292
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 42156
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.231694397706736e-5
allele num: 64188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.099e1

DP
type: SiteQuality
SIO_000300: 1.475369e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.576e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.62e-1

FS
type: SiteQuality
SIO_000300: 1.3929e1

VQSLOD
type: SiteQuality
SIO_000300: -6.418e-1

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 9.75e1
variant carriers: 20

GenotypeQuality
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GenotypeQuality
all individuals: 618
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variant carriers: 0

GenotypeQuality
all individuals: 301
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variant carriers: 0

GenotypeQuality
all individuals: 4861
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.78456730917979e-4
allele num: 64642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.030715316429602e-4
allele num: 9702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.632919660352711e-4
allele num: 6124
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.762e0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 1.495673e6

QD
type: SiteQuality
SIO_000300: 1.147e1

GenotypeQuality
all individuals: 664
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 9.75e1
variant carriers: 25

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 496
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variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.281603861147207e-5
allele num: 64644
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.650467632495874e-3
allele num: 10906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.675567423230975e-5
allele num: 14980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.497168e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.974e0

FS
type: SiteQuality
SIO_000300: 5.28e-1

QD
type: SiteQuality
SIO_000300: 1.052e1

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.31e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
all individuals: 639
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 405
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GenotypeQuality
all individuals: 42
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GenotypeQuality
all individuals: 2110
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4597
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1182
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63856
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.198178768272226e-4
allele num: 8346
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14748
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.96e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
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DP
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.896e0

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 1.094e1

MQ
type: SiteQuality
SIO_000300: 5.905e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.801795674057951e-5
allele num: 14702
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.570598397989634e-5
allele num: 63670
num of homozygotes: 0

DP
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SIO_000300: 1.473711e6

BaseQRankSum
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SIO_000300: 6.929999999999999e-1

QD
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SIO_000300: 6.35e0

InbreedingCoeff
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SIO_000300: -8.0e-4

MQRankSum
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MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -1.196e0

FS
type: SiteQuality
SIO_000300: 8.292e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.94e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.570302440249992e-5
allele num: 63682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5902
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.111e0

DP
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SIO_000300: 1.473142e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

ReadPosRankSum
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SIO_000300: -8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -7.0e-4

QD
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SIO_000300: 3.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.521e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.587452773279995e-5
allele num: 62994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.448157e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.496e0

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

FS
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.862475981334065e-5
allele num: 14572
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.811e1

DP
type: SiteQuality
SIO_000300: 1.448606e6

BaseQRankSum
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SIO_000300: -1.06e0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.937e1

ReadPosRankSum
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SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.78e-1

FS
type: SiteQuality
SIO_000300: 3.486e0

MQRankSum
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SIO_000300: -1.001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5794
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62940
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14582
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.775722106852935e-4
allele num: 10594
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQRankSum
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FS
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QD
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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MQ
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591039266849106e-5
allele num: 62852
num of homozygotes: 0

African
type: Population
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.608958681941048e-5
allele num: 62152
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Other
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African
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allele count: 0
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InbreedingCoeff
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SIO_000300: -1.1e-3

ClippingRankSum
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BaseQRankSum
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DP
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MQ
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MQRankSum
type: SiteQuality
SIO_000300: 8.71e-1

QD
type: SiteQuality
SIO_000300: 7.59e0

VQSLOD
type: SiteQuality
SIO_000300: -1.122e0

FS
type: SiteQuality
SIO_000300: 1.387e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.71e-1

GenotypeQuality
all individuals: 165
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2107
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.62311313098523e-5
allele num: 61610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14324
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

FS
type: SiteQuality
SIO_000300: 6.488e0

BaseQRankSum
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SIO_000300: -2.306e0

VQSLOD
type: SiteQuality
SIO_000300: -1.947e0

QD
type: SiteQuality
SIO_000300: 2.468e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.400357e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 283
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variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6249593760156e-5
allele num: 61540
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.006e0

VQSLOD
type: SiteQuality
SIO_000300: -1.207e0

BaseQRankSum
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SIO_000300: -2.362e0

MQRankSum
type: SiteQuality
SIO_000300: -7.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

DP
type: SiteQuality
SIO_000300: 1.400877e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

QD
type: SiteQuality
SIO_000300: 5.93e0

GenotypeDepth
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 224
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 3.25e1
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GenotypeQuality
all individuals: 992
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.639989504067174e-5
allele num: 60976
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.2e0

QD
type: SiteQuality
SIO_000300: 9.02e0

DP
type: SiteQuality
SIO_000300: 1.376882e6

MQ
type: SiteQuality
SIO_000300: 5.829e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.854e0

MQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.068e0

GenotypeDepth
all individuals: 240
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
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variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.652073352056831e-5
allele num: 60530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14162
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.598e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

DP
type: SiteQuality
SIO_000300: 1.360362e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.298e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.325e0

VQSLOD
type: SiteQuality
SIO_000300: 8.7e-1

FS
type: SiteQuality
SIO_000300: 4.94e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

GenotypeQuality
all individuals: 1934
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13516
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 949
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 277
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GenotypeQuality
all individuals: 264
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.952229299363058e-5
allele num: 10048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.668780455243308e-5
allele num: 59924
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.934e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 8.151e0

DP
type: SiteQuality
SIO_000300: 1.33705e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.337e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 38

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 913
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GenotypeQuality
all individuals: 588
bin: 8.25e1
variant carriers: 1

African
type: Population
allele count: 37
allele frequency: 4.190260475651189e-3
allele num: 8830
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.016535591853196e-4
allele num: 9918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14016
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.306186e6

MQRankSum
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SIO_000300: 1.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

QD
type: SiteQuality
SIO_000300: 1.414e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 431
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5120
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.421701053881549e-5
allele num: 13474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.141373e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
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SIO_000300: -1.061e0

VQSLOD
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SIO_000300: -1.03e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 8122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.833785667131226e-5
allele num: 54532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4818
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

FS
type: SiteQuality
SIO_000300: 2.026e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.552e0

VQSLOD
type: SiteQuality
SIO_000300: 9.67e-1

DP
type: SiteQuality
SIO_000300: 1.05593e6

QD
type: SiteQuality
SIO_000300: 1.265e1

MQRankSum
type: SiteQuality
SIO_000300: -4.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.92e-1

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 884

GenotypeQuality
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variant carriers: 2

African
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allele count: 17
allele frequency: 2.145922746781116e-3
allele num: 7922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 36
allele frequency: 7.785467128027681e-3
allele num: 4624
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 1.146131805157593e-2
allele num: 698
num of homozygotes: 0

Latino
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allele count: 57
allele frequency: 6.575911398246424e-3
allele num: 8668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 722
allele frequency: 1.361339467531488e-2
allele num: 53036
num of homozygotes: 4

South Asian
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allele count: 56
allele frequency: 4.379790395745347e-3
allele num: 12786
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.337e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 5.98e0

MQRankSum
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SIO_000300: 2.0e-1

DP
type: SiteQuality
SIO_000300: 1.033459e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -2.202e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.885653944788052e-5
allele num: 53032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12762
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 1.315e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 3.446e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.027179e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.956715467854869e-5
allele num: 12568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51478
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.567e0

QD
type: SiteQuality
SIO_000300: 4.46e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 1.006179e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.156e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47690
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.369487811558477e-4
allele num: 7302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4120
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.674e0

DP
type: SiteQuality
SIO_000300: 9.90222e5

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 3.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.477e0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 30

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 23

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

European (Non-Finnish)
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allele count: 695
allele frequency: 2.542062911485004e-1
allele num: 2734
num of homozygotes: 91

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 33
allele frequency: 3.58695652173913e-1
allele num: 92
num of homozygotes: 5

South Asian
type: Population
allele count: 2840
allele frequency: 3.783639754862776e-1
allele num: 7506
num of homozygotes: 540

Other
type: Population
allele count: 34
allele frequency: 2.88135593220339e-1
allele num: 118
num of homozygotes: 5

African
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allele count: 35
allele frequency: 1.822916666666667e-1
allele num: 192
num of homozygotes: 3

East Asian
type: Population
allele count: 42
allele frequency: 3.088235294117647e-1
allele num: 136
num of homozygotes: 7

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.31264e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e-1

VQSLOD
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.140000000000001e-2

MQRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.685e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2732
num of homozygotes: 0

South Asian
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allele frequency: 1.332267519317879e-4
allele num: 7506
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Other
type: Population
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allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
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Latino
type: Population
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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DP
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.906e1

BaseQRankSum
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QD
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VQSLOD
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ClippingRankSum
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SIO_000300: -4.1e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2726
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: NaN
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 3.996802557953637e-4
allele num: 7506
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: -6.449e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.046e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.26e-2

FS
type: SiteQuality
SIO_000300: 2.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

DP
type: SiteQuality
SIO_000300: 3.18963e5

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.115e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 1.1085e4

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 8.890000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.126e-1

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 13

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 6.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1464
bin: 7.5e0
variant carriers: 182

GenotypeQuality
all individuals: 743
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.671e-1

MQ
type: SiteQuality
SIO_000300: 5.516e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

QD
type: SiteQuality
SIO_000300: 1.903e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.497e3