15-66386741-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386741
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386741
    reference: chr 15
allele count: 2
allele frequency: 9.909820632246556e-5
allele num: 20182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.168C>A
  hgvsp: ENSP00000378987.2:p.Ser56Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.393C>A
  hgvsp: ENSP00000414475.1:p.Ser131Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.393C>A
  hgvsp: ENSP00000386908.2:p.Ser131Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.393C>A
  hgvsp: ENSP00000353919.4:p.Ser131Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2089C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.168C>A
  hgvsp: ENSP00000288745.3:p.Ser56Arg
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31536
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12664
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29918
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser131Arg
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

15-66386752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386752
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386752
    reference: chr 15
allele count: 2
allele frequency: 9.637625289128758e-5
allele num: 20752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.157G>A
  hgvsp: ENSP00000288745.3:p.Asp53Asn
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.382G>A
  hgvsp: ENSP00000353919.4:p.Asp128Asn
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.382G>A
  hgvsp: ENSP00000414475.1:p.Asp128Asn
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.157G>A
  hgvsp: ENSP00000378987.2:p.Asp53Asn
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.382G>A
  hgvsp: ENSP00000386908.2:p.Asp128Asn
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2100G>A
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28713
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27505
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genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 389
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genotype quality: GenotypeQuality
  all individuals: 216
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genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15163
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp128Asn
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-66386767-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386767
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386767
    reference: chr 15
allele count: 1
allele frequency: 4.493170381020848e-5
allele num: 22256
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.367G>A
  hgvsp: ENSP00000386908.2:p.Gly123Ser
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.142G>A
  hgvsp: ENSP00000378987.2:p.Gly48Ser
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.367G>A
  hgvsp: ENSP00000414475.1:p.Gly123Ser
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.142G>A
  hgvsp: ENSP00000288745.3:p.Gly48Ser
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.367G>A
  hgvsp: ENSP00000353919.4:p.Gly123Ser
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2115G>A
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24920
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4679
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 24651
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2045
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly123Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-66386774-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386774
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386774
    reference: chr 15
allele count: 9
allele frequency: 4.029730455807289e-4
allele num: 22334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2122C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.360C>T
  hgvsp: ENST00000409699.2:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.135C>T
  hgvsp: ENST00000395625.2:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.360C>T
  hgvsp: ENST00000360698.4:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.360C>T
  hgvsp: ENST00000422354.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.135C>T
  hgvsp: ENST00000288745.3:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21356
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 323
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4418
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 23813
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Cys120Cys
num of homozygotes: 1
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

15-66386774-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386774
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386774
    reference: chr 15
allele count: 1
allele frequency: 4.477478284230322e-5
allele num: 22334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2122C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.360C>A
  hgvsp: ENSP00000353919.4:p.Cys120Ter
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.135C>A
  hgvsp: ENSP00000288745.3:p.Cys45Ter
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.135C>A
  hgvsp: ENSP00000378987.2:p.Cys45Ter
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.360C>A
  hgvsp: ENSP00000414475.1:p.Cys120Ter
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.360C>A
  hgvsp: ENSP00000386908.2:p.Cys120Ter
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21356
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4362
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23813
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys120Ter
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-66386779-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386779
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386779
    reference: chr 15
allele count: 4
allele frequency: 1.725476662928134e-4
allele num: 23182
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.355C>T
  hgvsp: ENSP00000386908.2:p.His119Tyr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.355C>T
  hgvsp: ENSP00000414475.1:p.His119Tyr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.130C>T
  hgvsp: ENSP00000288745.3:p.His44Tyr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.130C>T
  hgvsp: ENSP00000378987.2:p.His44Tyr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.355C>T
  hgvsp: ENSP00000353919.4:p.His119Tyr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2127C>T
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23562
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4310
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His119Tyr
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

15-66386785-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386785
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386785
    reference: chr 15
allele count: 373
allele frequency: 2.229261295720775e-2
allele num: 16732
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.349A>C
  hgvsp: ENSP00000386908.2:p.Thr117Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.124A>C
  hgvsp: ENSP00000288745.3:p.Thr42Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.349A>C
  hgvsp: ENSP00000353919.4:p.Thr117Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.124A>C
  hgvsp: ENSP00000378987.2:p.Thr42Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2133A>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.349A>C
  hgvsp: ENSP00000414475.1:p.Thr117Pro
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 23246
  bin: 2.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 20794
  bin: 7.5e0
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 1.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 9.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 17850
  bin: 7.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 3739
  bin: 1.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 6.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 6.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 16364
  bin: 2.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 8134
  bin: 2.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 1.25e1
  variant carriers: 20
hgvs: p.Thr117Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

15-66386786-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386786
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386786
    reference: chr 15
allele count: 1
allele frequency: 4.068017248393133e-5
allele num: 24582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.348C>T
  hgvsp: ENST00000422354.1:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.348C>T
  hgvsp: ENST00000409699.2:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.123C>T
  hgvsp: ENST00000288745.3:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.348C>T
  hgvsp: ENST00000360698.4:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.123C>T
  hgvsp: ENST00000395625.2:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2134C>T
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3993
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3006
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3097
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp116Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum

15-66386787-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386787
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386787
    reference: chr 15
allele count: 1
allele frequency: 4.293688278231e-5
allele num: 23290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2135A>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.347A>C
  hgvsp: ENSP00000414475.1:p.Asp116Ala
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.122A>C
  hgvsp: ENSP00000288745.3:p.Asp41Ala
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.347A>C
  hgvsp: ENSP00000386908.2:p.Asp116Ala
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.347A>C
  hgvsp: ENSP00000353919.4:p.Asp116Ala
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.122A>C
  hgvsp: ENSP00000378987.2:p.Asp41Ala
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19772
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3200
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4449
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp116Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

15-66386790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386790
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386790
    reference: chr 15
allele count: 1
allele frequency: 4.215496163898491e-5
allele num: 23722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.119C>T
  hgvsp: ENSP00000378987.2:p.Pro40Leu
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.344C>T
  hgvsp: ENSP00000353919.4:p.Pro115Leu
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2138C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.344C>T
  hgvsp: ENSP00000386908.2:p.Pro115Leu
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.344C>T
  hgvsp: ENSP00000414475.1:p.Pro115Leu
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.119C>T
  hgvsp: ENSP00000288745.3:p.Pro40Leu
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19864
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14413
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3644
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3035
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23683
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro115Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

15-66386792-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386792
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386792
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 23798
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2140C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.117C>T
  hgvsp: ENST00000395625.2:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.342C>T
  hgvsp: ENST00000360698.4:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.342C>T
  hgvsp: ENST00000422354.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.117C>T
  hgvsp: ENST00000288745.3:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.342C>T
  hgvsp: ENST00000409699.2:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19946
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3394
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser114Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

15-66386793-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386793
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386793
    reference: chr 15
allele count: 2
allele frequency: 8.470269354565475e-5
allele num: 23612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.341C>T
  hgvsp: ENSP00000353919.4:p.Ser114Phe
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2141C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.341C>T
  hgvsp: ENSP00000414475.1:p.Ser114Phe
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.341C>T
  hgvsp: ENSP00000386908.2:p.Ser114Phe
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.116C>T
  hgvsp: ENSP00000288745.3:p.Ser39Phe
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.116C>T
  hgvsp: ENSP00000378987.2:p.Ser39Phe
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19937
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25529
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4111
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3650
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23965
  bin: 7.5e0
  variant carriers: 2
hgvs: p.Ser114Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

15-66386794-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386794
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386794
    reference: chr 15
allele count: 1
allele frequency: 4.268761205498164e-5
allele num: 23426
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.340T>C
  hgvsp: ENSP00000353919.4:p.Ser114Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.115T>C
  hgvsp: ENSP00000288745.3:p.Ser39Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.340T>C
  hgvsp: ENSP00000386908.2:p.Ser114Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.340T>C
  hgvsp: ENSP00000414475.1:p.Ser114Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.115T>C
  hgvsp: ENSP00000378987.2:p.Ser39Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2142T>C
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20165
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14786
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23679
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Ser114Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-66386797-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386797
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386797
    reference: chr 15
allele count: 2
allele frequency: 8.596234849136078e-5
allele num: 23266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.337G>A
  hgvsp: ENSP00000414475.1:p.Val113Ile
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.337G>A
  hgvsp: ENSP00000353919.4:p.Val113Ile
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.337G>A
  hgvsp: ENSP00000386908.2:p.Val113Ile
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.112G>A
  hgvsp: ENSP00000378987.2:p.Val38Ile
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2145G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.112G>A
  hgvsp: ENSP00000288745.3:p.Val38Ile
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20109
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25541
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23875
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3779
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2819
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Val113Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

15-66386798-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386798
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386798
    reference: chr 15
allele count: 460
allele frequency: 1.951302282175278e-2
allele num: 23574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.336C>T
  hgvsp: ENST00000422354.1:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.111C>T
  hgvsp: ENST00000395625.2:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.336C>T
  hgvsp: ENST00000360698.4:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.336C>T
  hgvsp: ENST00000409699.2:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.111C>T
  hgvsp: ENST00000288745.3:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2146C>T
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 1.25e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 25274
  bin: 2.5e0
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20251
  bin: 7.5e0
  variant carriers: 413
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 1.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 6.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 8.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4163
  bin: 6.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 9.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 22
hgvs: p.Cys112Cys
num of homozygotes: 2
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

15-66386802-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386802
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386802
    reference: chr 15
allele count: 11
allele frequency: 4.686035613870666e-4
allele num: 23474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2150G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.332G>A
  hgvsp: ENSP00000353919.4:p.Arg111His
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.332G>A
  hgvsp: ENSP00000386908.2:p.Arg111His
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.332G>A
  hgvsp: ENSP00000414475.1:p.Arg111His
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.107G>A
  hgvsp: ENSP00000288745.3:p.Arg36His
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.107G>A
  hgvsp: ENSP00000378987.2:p.Arg36His
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25529
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20310
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4261
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.75e1
  variant carriers: 1
hgvs: p.Arg111His
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

15-66386803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386803
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386803
    reference: chr 15
allele count: 2
allele frequency: 8.519338899301415e-5
allele num: 23476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2151C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.106C>T
  hgvsp: ENSP00000288745.3:p.Arg36Cys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.331C>T
  hgvsp: ENSP00000414475.1:p.Arg111Cys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.331C>T
  hgvsp: ENSP00000353919.4:p.Arg111Cys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.106C>T
  hgvsp: ENSP00000378987.2:p.Arg36Cys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.331C>T
  hgvsp: ENSP00000386908.2:p.Arg111Cys
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20427
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16793
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24358
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg111Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

15-66386807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386807
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386807
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 23532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.327C>T
  hgvsp: ENST00000422354.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.102C>T
  hgvsp: ENST00000288745.3:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.327C>T
  hgvsp: ENST00000409699.2:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.327C>T
  hgvsp: ENST00000360698.4:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2155C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.102C>T
  hgvsp: ENST00000395625.2:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20568
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17358
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His109His
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

15-66386810-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386810
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386810
    reference: chr 15
allele count: 1
allele frequency: 4.242681374628766e-5
allele num: 23570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.99G>C
  hgvsp: ENST00000288745.3:c.99G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.324G>C
  hgvsp: ENST00000409699.2:c.324G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.324G>C
  hgvsp: ENST00000422354.1:c.324G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.324G>C
  hgvsp: ENST00000360698.4:c.324G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2158G>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.99G>C
  hgvsp: ENST00000395625.2:c.99G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25492
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17515
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val108Val
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

15-66386823-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386823
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386823
    reference: chr 15
allele count: 9
allele frequency: 3.788197659735668e-4
allele num: 23758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.86C>T
  hgvsp: ENSP00000378987.2:p.Thr29Met
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.311C>T
  hgvsp: ENSP00000386908.2:p.Thr104Met
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.86C>T
  hgvsp: ENSP00000288745.3:p.Thr29Met
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.311C>T
  hgvsp: ENSP00000414475.1:p.Thr104Met
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2171C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.311C>T
  hgvsp: ENSP00000353919.4:p.Thr104Met
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19522
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26029
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25569
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr104Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

15-66386829-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386829
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386829
    reference: chr 15
allele count: 1
allele frequency: 4.219409282700422e-5
allele num: 23700
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.305T>C
  hgvsp: ENSP00000386908.2:p.Leu102Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.80T>C
  hgvsp: ENSP00000378987.2:p.Leu27Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.305T>C
  hgvsp: ENSP00000353919.4:p.Leu102Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.80T>C
  hgvsp: ENSP00000288745.3:p.Leu27Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.305T>C
  hgvsp: ENSP00000414475.1:p.Leu102Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2177T>C
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26322
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26241
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu102Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

15-66386838-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386838
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386838
    reference: chr 15
allele count: 1
allele frequency: 4.276062601556487e-5
allele num: 23386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.77-6C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.302-6C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.302-6C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2180-6C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.77-6C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.302-6C>T
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3205
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3779
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26621
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 2.5e0
  variant carriers: 0
hgvs: c.302-6C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-66386852-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386852
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386852
    reference: chr 15
allele count: 3
allele frequency: 1.314175573856667e-4
allele num: 22828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.302-20C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.302-20C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.77-20C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.77-20C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2180-20C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.302-20C>T
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17125
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24999
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4453
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5344
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3257
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25011
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

15-66386853-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386853
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386853
    reference: chr 15
allele count: 13501
allele frequency: 5.263137377202557e-1
allele num: 25652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2180-21C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.77-21C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.302-21C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.302-21C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.302-21C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.77-21C>T
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 1.75e1
  variant carriers: 887
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.25e1
  variant carriers: 962
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 2.75e1
  variant carriers: 951
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 756
genotype depth: GenotypeDepth
  all individuals: 18385
  bin: 2.5e0
  variant carriers: 5802
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 18652
  bin: 7.5e0
  variant carriers: 12574
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 938
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 1.25e1
  variant carriers: 2687
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 2.25e1
  variant carriers: 726
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.75e1
  variant carriers: 361
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.75e1
  variant carriers: 553
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 345
genotype quality: GenotypeQuality
  all individuals: 9416
  bin: 9.75e1
  variant carriers: 9006
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 5.25e1
  variant carriers: 426
genotype quality: GenotypeQuality
  all individuals: 4100
  bin: 1.75e1
  variant carriers: 3797
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 6.25e1
  variant carriers: 844
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.25e1
  variant carriers: 361
genotype quality: GenotypeQuality
  all individuals: 4336
  bin: 2.25e1
  variant carriers: 2450
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.75e1
  variant carriers: 616
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 3.25e1
  variant carriers: 1050
genotype quality: GenotypeQuality
  all individuals: 11250
  bin: 7.5e0
  variant carriers: 2602
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 3.75e1
  variant carriers: 312
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 1.25e1
  variant carriers: 2416
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 7.25e1
  variant carriers: 455
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.75e1
  variant carriers: 274
num of homozygotes: 3491
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

15-66386854-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386854
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386854
    reference: chr 15
allele count: 1
allele frequency: 4.364525139664805e-5
allele num: 22912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.302-22C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2180-22C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.302-22C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.77-22C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.77-22C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.302-22C>T
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3491
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30870
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

15-66386860-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66386860
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66386860
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 21846
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.302-28C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2180-28C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.302-28C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.77-28C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.77-28C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.302-28C>A
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32621
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5436
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30288
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2935
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

15-66411420-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411420
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411420
    reference: chr 15
allele count: 1
allele frequency: 4.715646515137225e-5
allele num: 21206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2181+4T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4817T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.301+4T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.301+4T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.301+4T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4817T>C
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5234
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
hgvs: c.301+4T>C
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

15-66411421-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411421
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411421
    reference: chr 15
allele count: 1
allele frequency: 4.71342383107089e-5
allele num: 21216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4816A>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.301+3A>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.301+3A>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4816A>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2181+3A>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.301+3A>T
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5262
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3828
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
hgvs: c.301+3A>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-66411424-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411424
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411424
    reference: chr 15
allele count: 3
allele frequency: 1.411233418007338e-4
allele num: 21258
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.301C>T
  hgvsp: ENSP00000386908.2:p.Pro101Ser
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.301C>T
  hgvsp: ENSP00000414475.1:p.Pro101Ser
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.301C>T
  hgvsp: ENSP00000353919.4:p.Pro101Ser
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2181C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4813C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4813C>T
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5253
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3507
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro101Ser
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

15-66411424-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411424
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411424
    reference: chr 15
allele count: 4
allele frequency: 1.881644557343118e-4
allele num: 21258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2181C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.301C>A
  hgvsp: ENSP00000414475.1:p.Pro101Thr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4813C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.301C>A
  hgvsp: ENSP00000386908.2:p.Pro101Thr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4813C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.301C>A
  hgvsp: ENSP00000353919.4:p.Pro101Thr
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5253
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3507
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro101Thr
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/15-66411436-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411436
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411436
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 21386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2193G>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.289G>T
  hgvsp: ENSP00000353919.4:p.Asp97Tyr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4801G>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.289G>T
  hgvsp: ENSP00000386908.2:p.Asp97Tyr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4801G>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.289G>T
  hgvsp: ENSP00000414475.1:p.Asp97Tyr
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2995
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp97Tyr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

15-66411439-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411439
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411439
    reference: chr 15
allele count: 6
allele frequency: 2.801643630930146e-4
allele num: 21416
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.286G>A
  hgvsp: ENSP00000386908.2:p.Gly96Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2196G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4798G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4798G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.286G>A
  hgvsp: ENSP00000353919.4:p.Gly96Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.286G>A
  hgvsp: ENSP00000414475.1:p.Gly96Arg
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2914
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly96Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

15-66411441-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411441
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411441
    reference: chr 15
allele count: 8184
allele frequency: 3.78923974442078e-1
allele num: 21598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4796G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.284G>A
  hgvsp: ENSP00000414475.1:p.Ser95Asn
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.284G>A
  hgvsp: ENSP00000353919.4:p.Ser95Asn
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2198G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4796G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.284G>A
  hgvsp: ENSP00000386908.2:p.Ser95Asn
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 3.25e1
  variant carriers: 320
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 419
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.75e1
  variant carriers: 377
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 2.25e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 379
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.5e0
  variant carriers: 293
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 477
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 513
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 480
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 2.5e0
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 2.75e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 523
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.75e1
  variant carriers: 253
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 655
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.25e1
  variant carriers: 428
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.75e1
  variant carriers: 484
genotype quality: GenotypeQuality
  all individuals: 6628
  bin: 9.75e1
  variant carriers: 6277
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 7.5e0
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 6.75e1
  variant carriers: 43
hgvs: p.Ser95Asn
num of homozygotes: 1678
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

15-66411445-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411445
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411445
    reference: chr 15
allele count: 2
allele frequency: 9.291953168556031e-5
allele num: 21524
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.280G>A
  hgvsp: ENSP00000386908.2:p.Glu94Lys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4792G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.280G>A
  hgvsp: ENSP00000414475.1:p.Glu94Lys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.280G>A
  hgvsp: ENSP00000353919.4:p.Glu94Lys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4792G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2202G>A
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu94Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum

15-66411452-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411452
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411452
    reference: chr 15
allele count: 81
allele frequency: 3.766390774667535e-3
allele num: 21506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.273C>A
  hgvsp: ENST00000360698.4:c.273C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2209C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.273C>A
  hgvsp: ENST00000422354.1:c.273C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4785C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4785C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.273C>A
  hgvsp: ENST00000409699.2:c.273C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 9.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly91Gly
num of homozygotes: 2
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

15-66411475-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411475
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411475
    reference: chr 15
allele count: 1
allele frequency: 4.652894100130281e-5
allele num: 21492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4762C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2232C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.250C>A
  hgvsp: ENST00000360698.4:c.250C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4762C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.250C>A
  hgvsp: ENST00000422354.1:c.250C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.250C>A
  hgvsp: ENST00000409699.2:c.250C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg84Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

15-66411507-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411507
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411507
    reference: chr 15
allele count: 1
allele frequency: 4.655493482309125e-5
allele num: 21480
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.218C>T
  hgvsp: ENSP00000386908.2:p.Ala73Val
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2264C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4730C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.218C>T
  hgvsp: ENSP00000414475.1:p.Ala73Val
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.218C>T
  hgvsp: ENSP00000353919.4:p.Ala73Val
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4730C>T
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala73Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

15-66411508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411508
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411508
    reference: chr 15
allele count: 1
allele frequency: 4.655493482309125e-5
allele num: 21480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2265G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4729G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.217G>A
  hgvsp: ENSP00000386908.2:p.Ala73Thr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.217G>A
  hgvsp: ENSP00000414475.1:p.Ala73Thr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.217G>A
  hgvsp: ENSP00000353919.4:p.Ala73Thr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4729G>A
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala73Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

15-66411516-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411516
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411516
    reference: chr 15
allele count: 1
allele frequency: 4.663744053726331e-5
allele num: 21442
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4721A>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.209A>G
  hgvsp: ENSP00000386908.2:p.Tyr70Cys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4721A>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.209A>G
  hgvsp: ENSP00000414475.1:p.Tyr70Cys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.209A>G
  hgvsp: ENSP00000353919.4:p.Tyr70Cys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2273A>G
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr70Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

15-66411551-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411551
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411551
    reference: chr 15
allele count: 20
allele frequency: 9.498480243161094e-4
allele num: 21056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4686C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.201-27C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.201-27C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2281-27C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.201-27C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4686C>G
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 568
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

15-66411555-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411555
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411555
    reference: chr 15
allele count: 2
allele frequency: 9.513842641042717e-5
allele num: 21022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4682C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.201-31C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4682C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2281-31C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.201-31C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.201-31C>T
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 180
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genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

15-66411560-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66411560
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66411560
    reference: chr 15
allele count: 1
allele frequency: 4.772814051164567e-5
allele num: 20952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+4677C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+4677C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2281-36C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.201-36C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.201-36C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.201-36C>A
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3620
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

15-66416190-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416190
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416190
    reference: chr 15
allele count: 9
allele frequency: 7.43383883437407e-5
allele num: 121068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.200+47C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+47C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+47C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.200+47C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.200+47C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2282+47C>G
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22409
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11361
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10843
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8404
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

15-66416192-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416192
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416192
    reference: chr 15
allele count: 2
allele frequency: 1.652046059044126e-5
allele num: 121062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2282+45C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+45C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.200+45C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.200+45C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.200+45C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+45C>T
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11410
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8176
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3806
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

15-66416192-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416192
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416192
    reference: chr 15
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2282+45C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.200+45C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+45C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+45C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.200+45C>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.200+45C>G
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8359
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3806
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28235
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

15-66416192-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416192
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416192
    reference: chr 15
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2282+45C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.200+45C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.200+45C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+45C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.200+45C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+45C>A
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8176
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3806
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

15-66416193-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416193
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416193
    reference: chr 15
allele count: 23
allele frequency: 1.900009913095199e-4
allele num: 121052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.200+44G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+44G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2282+44G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.200+44G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+44G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.200+44G>A
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11437
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22561
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11289
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3744
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28663
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8176
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

15-66416196-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416196
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416196
    reference: chr 15
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+41T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2282+41T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.200+41T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.200+41T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.200+41T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+41T>C
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8406
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

15-66416197-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416197
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416197
    reference: chr 15
allele count: 1
allele frequency: 8.254911672445104e-6
allele num: 121140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+40C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.200+40C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2282+40C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.200+40C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+40C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.200+40C>T
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11460
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8155
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8383
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3703
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/15-66416201-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416201
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416201
    reference: chr 15
allele count: 2
allele frequency: 1.651636772041093e-5
allele num: 121092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+36G>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.200+36G>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.200+36G>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.200+36G>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2282+36G>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+36G>T
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8276
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

15-66416203-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416203
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416203
    reference: chr 15
allele count: 15
allele frequency: 1.238195866076735e-4
allele num: 121144
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.200+34A>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+34A>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.200+34A>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2282+34A>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.200+34A>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+34A>G
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11644
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8135
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

15-66416207-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416207
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416207
    reference: chr 15
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.200+30G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2282+30G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+30G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+30G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.200+30G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.200+30G>A
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11622
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8124
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31518
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

15-66416217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416217
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416217
    reference: chr 15
allele count: 2
allele frequency: 1.649266900862567e-5
allele num: 121266
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.200+20G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.200+20G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+20G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.200+20G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2282+20G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+20G>A
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11673
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3574
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2735
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

15-66416227-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416227
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416227
    reference: chr 15
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2282+10T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.200+10T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.200+10T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.200+10T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76+10T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76+10T>C
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32696
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ

15-66416237-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416237
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416237
    reference: chr 15
allele count: 9
allele frequency: 7.416685895111579e-5
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2282G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.200G>A
  hgvsp: ENSP00000414475.1:p.Arg67Gln
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.200G>A
  hgvsp: ENSP00000386908.2:p.Arg67Gln
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.76G>A
  hgvsp: ENSP00000378987.2:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.200G>A
  hgvsp: ENSP00000353919.4:p.Arg67Gln
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.76G>A
  hgvsp: ENSP00000288745.3:p.Ala26Thr
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8116
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg67Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

15-66416245-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416245
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416245
    reference: chr 15
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.192C>A
  hgvsp: ENST00000360698.4:c.192C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2290C>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.192C>A
  hgvsp: ENST00000409699.2:c.192C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.68C>A
  hgvsp: ENSP00000378987.2:p.Pro23Gln
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.68C>A
  hgvsp: ENSP00000288745.3:p.Pro23Gln
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.192C>A
  hgvsp: ENST00000422354.1:c.192C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2735
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8112
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro23Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/15-66416257-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416257
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416257
    reference: chr 15
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.180G>T
  hgvsp: ENSP00000414475.1:p.Trp60Cys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.180G>T
  hgvsp: ENSP00000386908.2:p.Trp60Cys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.180G>T
  hgvsp: ENSP00000353919.4:p.Trp60Cys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.56G>T
  hgvsp: ENSP00000378987.2:p.Gly19Val
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2302G>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.56G>T
  hgvsp: ENSP00000288745.3:p.Gly19Val
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32928
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Trp60Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

15-66416257-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416257
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416257
    reference: chr 15
allele count: 5
allele frequency: 4.119091163725636e-5
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.56G>A
  hgvsp: ENSP00000288745.3:p.Gly19Asp
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.56G>A
  hgvsp: ENSP00000378987.2:p.Gly19Asp
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.180G>A
  hgvsp: ENSP00000386908.2:p.Trp60Ter
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.180G>A
  hgvsp: ENSP00000414475.1:p.Trp60Ter
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2302G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.180G>A
  hgvsp: ENSP00000353919.4:p.Trp60Ter
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8436
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Trp60Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

15-66416259-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416259
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416259
    reference: chr 15
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.178T>C
  hgvsp: ENSP00000386908.2:p.Trp60Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.178T>C
  hgvsp: ENSP00000353919.4:p.Trp60Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2304T>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.54T>C
  hgvsp: ENST00000288745.3:c.54T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.178T>C
  hgvsp: ENSP00000414475.1:p.Trp60Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.54T>C
  hgvsp: ENST00000395625.2:c.54T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8110
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Trp60Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

15-66416260-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416260
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416260
    reference: chr 15
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.53C>T
  hgvsp: ENSP00000288745.3:p.Thr18Ile
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.177C>T
  hgvsp: ENST00000360698.4:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2305C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.53C>T
  hgvsp: ENSP00000378987.2:p.Thr18Ile
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.177C>T
  hgvsp: ENST00000409699.2:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.177C>T
  hgvsp: ENST00000422354.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3564
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32935
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr18Ile
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

15-66416261-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416261
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416261
    reference: chr 15
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.52A>G
  hgvsp: ENSP00000378987.2:p.Thr18Ala
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.52A>G
  hgvsp: ENSP00000288745.3:p.Thr18Ala
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2306A>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.176A>G
  hgvsp: ENSP00000353919.4:p.Asn59Ser
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.176A>G
  hgvsp: ENSP00000414475.1:p.Asn59Ser
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.176A>G
  hgvsp: ENSP00000386908.2:p.Asn59Ser
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12075
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32937
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn59Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

15-66416269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416269
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416269
    reference: chr 15
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.168C>T
  hgvsp: ENST00000409699.2:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.44C>T
  hgvsp: ENSP00000378987.2:p.Thr15Ile
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.168C>T
  hgvsp: ENST00000360698.4:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2314C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.44C>T
  hgvsp: ENSP00000288745.3:p.Thr15Ile
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.168C>T
  hgvsp: ENST00000422354.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 24253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr15Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

15-66416273-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416273
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416273
    reference: chr 15
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.164C>T
  hgvsp: ENSP00000414475.1:p.Thr55Ile
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.164C>T
  hgvsp: ENSP00000353919.4:p.Thr55Ile
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.40C>T
  hgvsp: ENSP00000288745.3:p.Gln14Ter
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.40C>T
  hgvsp: ENSP00000378987.2:p.Gln14Ter
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.164C>T
  hgvsp: ENSP00000386908.2:p.Thr55Ile
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2318C>T
  variant of: http://identifiers.org/hgnc/29635
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8438
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln14Ter
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

15-66416277-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416277
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416277
    reference: chr 15
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.160T>C
  hgvsp: ENSP00000353919.4:p.Cys54Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.160T>C
  hgvsp: ENSP00000386908.2:p.Cys54Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.160T>C
  hgvsp: ENSP00000414475.1:p.Cys54Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.36T>C
  hgvsp: ENST00000395625.2:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.36T>C
  hgvsp: ENST00000288745.3:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2322T>C
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8437
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8108
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys54Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

15-66416279-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416279
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416279
    reference: chr 15
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.34G>C
  hgvsp: ENSP00000288745.3:p.Asp12His
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.158G>C
  hgvsp: ENSP00000414475.1:p.Arg53Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.158G>C
  hgvsp: ENSP00000386908.2:p.Arg53Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2324G>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.158G>C
  hgvsp: ENSP00000353919.4:p.Arg53Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.34G>C
  hgvsp: ENSP00000378987.2:p.Asp12His
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3564
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32953
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8109
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg53Pro
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

15-66416280-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416280
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416280
    reference: chr 15
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.157C>T
  hgvsp: ENSP00000414475.1:p.Arg53Ter
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.157C>T
  hgvsp: ENSP00000386908.2:p.Arg53Ter
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.33C>T
  hgvsp: ENST00000288745.3:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.157C>T
  hgvsp: ENSP00000353919.4:p.Arg53Ter
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2325C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.33C>T
  hgvsp: ENST00000395625.2:c.33C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3563
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg53Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

15-66416284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416284
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416284
    reference: chr 15
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.153C>T
  hgvsp: ENST00000422354.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2329C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.29C>T
  hgvsp: ENSP00000378987.2:p.Thr10Ile
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.153C>T
  hgvsp: ENST00000409699.2:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.29C>T
  hgvsp: ENSP00000288745.3:p.Thr10Ile
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.153C>T
  hgvsp: ENST00000360698.4:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32959
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8436
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr10Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum

15-66416288-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416288
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416288
    reference: chr 15
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.149A>G
  hgvsp: ENSP00000414475.1:p.Tyr50Cys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.25A>G
  hgvsp: ENSP00000378987.2:p.Ile9Val
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2333A>G
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.149A>G
  hgvsp: ENSP00000386908.2:p.Tyr50Cys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.149A>G
  hgvsp: ENSP00000353919.4:p.Tyr50Cys
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.25A>G
  hgvsp: ENSP00000288745.3:p.Ile9Val
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8106
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3565
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr50Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

15-66416294-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416294
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416294
    reference: chr 15
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.19A>C
  hgvsp: ENST00000288745.3:c.19A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2339A>C
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.143A>C
  hgvsp: ENSP00000414475.1:p.Gln48Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.19A>C
  hgvsp: ENST00000395625.2:c.19A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.143A>C
  hgvsp: ENSP00000353919.4:p.Gln48Pro
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.143A>C
  hgvsp: ENSP00000386908.2:p.Gln48Pro
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3565
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln48Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

15-66416298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416298
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416298
    reference: chr 15
allele count: 67
allele frequency: 5.519036557439167e-4
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.139G>A
  hgvsp: ENSP00000414475.1:p.Asp47Asn
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.15G>A
  hgvsp: ENST00000288745.3:c.15G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.139G>A
  hgvsp: ENSP00000386908.2:p.Asp47Asn
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.139G>A
  hgvsp: ENSP00000353919.4:p.Asp47Asn
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2343G>A
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.15G>A
  hgvsp: ENST00000395625.2:c.15G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11684
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 24245
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3559
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2733
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8148
  bin: 9.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp47Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

15-66416299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416299
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416299
    reference: chr 15
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.138C>T
  hgvsp: ENST00000409699.2:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2344C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.14C>T
  hgvsp: ENSP00000378987.2:p.Ser5Leu
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.138C>T
  hgvsp: ENST00000422354.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.138C>T
  hgvsp: ENST00000360698.4:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.14C>T
  hgvsp: ENSP00000288745.3:p.Ser5Leu
  variant of: http://identifiers.org/hgnc/29635
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8436
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8086
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Ser5Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

15-66416303-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416303
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416303
    reference: chr 15
allele count: 6
allele frequency: 4.942420797706717e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.10C>G
  hgvsp: ENSP00000288745.3:p.Pro4Ala
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.10C>G
  hgvsp: ENSP00000378987.2:p.Pro4Ala
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.134C>G
  hgvsp: ENSP00000414475.1:p.Pro45Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.134C>G
  hgvsp: ENSP00000353919.4:p.Pro45Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.134C>G
  hgvsp: ENSP00000386908.2:p.Pro45Arg
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2348C>G
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8086
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2733
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro45Arg
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

15-66416309-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 66416309
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 66416309
    reference: chr 15
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378976
  ensembl transcript: ENST00000395614
  gene symbol: MEGF11
  hgvsc: ENST00000395614.1:c.-2354C>T
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000386908
  ensembl transcript: ENST00000409699
  gene symbol: MEGF11
  hgvsc: ENST00000409699.2:c.128C>T
  hgvsp: ENSP00000386908.2:p.Ala43Val
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000288745
  ensembl transcript: ENST00000288745
  gene symbol: MEGF11
  hgvsc: ENST00000288745.3:c.4C>T
  hgvsp: ENSP00000288745.3:p.His2Tyr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000378987
  ensembl transcript: ENST00000395625
  gene symbol: MEGF11
  hgvsc: ENST00000395625.2:c.4C>T
  hgvsp: ENSP00000378987.2:p.His2Tyr
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000414475
  ensembl transcript: ENST00000422354
  gene symbol: MEGF11
  hgvsc: ENST00000422354.1:c.128C>T
  hgvsp: ENSP00000414475.1:p.Ala43Val
  variant of: http://identifiers.org/hgnc/29635
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157890
  ensembl protein: ENSP00000353919
  ensembl transcript: ENST00000360698
  gene symbol: MEGF11
  hgvsc: ENST00000360698.4:c.128C>T
  hgvsp: ENSP00000353919.4:p.Ala43Val
  variant of: http://identifiers.org/hgnc/29635
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala43Val
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1044
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4242
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 463
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1601
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.295336787564767e-4
allele num: 7720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.18962645729241e-4
allele num: 8406
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 5.03566e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.47e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 3.039e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.205e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4370
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.294630564479119e-4
allele num: 8716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7868
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.424e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.28e-2

MQ
type: SiteQuality
SIO_000300: 5.728e1

DP
type: SiteQuality
SIO_000300: 5.29987e5

VQSLOD
type: SiteQuality
SIO_000300: -2.849e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

QD
type: SiteQuality
SIO_000300: 1.263e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18660
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.250312578144536e-4
allele num: 7998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 9.4e0

FS
type: SiteQuality
SIO_000300: 2.774e0

DP
type: SiteQuality
SIO_000300: 5.61749e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.58e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.038e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 14432
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.125e-3
allele num: 960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.500625156289073e-4
allele num: 7998
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 4.132231404958678e-4
allele num: 9680
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.073e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.99e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 9.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.753e-1

DP
type: SiteQuality
SIO_000300: 5.65183e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e-1

GenotypeQuality
all individuals: 1697
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14432
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4418
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.033057851239669e-4
allele num: 9680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.073e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.753e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

DP
type: SiteQuality
SIO_000300: 5.65183e5

FS
type: SiteQuality
SIO_000300: 9.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.99e-2

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15808
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3408
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.961548002976929e-4
allele num: 8062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.51e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

FS
type: SiteQuality
SIO_000300: 2.926e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.5e-2

DP
type: SiteQuality
SIO_000300: 5.72701e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.23e-2

MQ
type: SiteQuality
SIO_000300: 5.934e1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

GenotypeQuality
all individuals: 198
bin: 5.75e1
variant carriers: 20

GenotypeQuality
all individuals: 219
bin: 3.75e1
variant carriers: 46

GenotypeQuality
all individuals: 296
bin: 3.25e1
variant carriers: 41

GenotypeQuality
all individuals: 327
bin: 2.75e1
variant carriers: 42

GenotypeQuality
all individuals: 219
bin: 8.25e1
variant carriers: 15

GenotypeQuality
all individuals: 231
bin: 4.25e1
variant carriers: 43

GenotypeQuality
all individuals: 1309
bin: 9.75e1
variant carriers: 104

GenotypeQuality
all individuals: 315
bin: 7.25e1
variant carriers: 25

GenotypeQuality
all individuals: 307
bin: 7.75e1
variant carriers: 12

South Asian
type: Population
allele count: 44
allele frequency: 5.893383337798017e-3
allele num: 7466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.347826086956522e-2
allele num: 46
num of homozygotes: 0

East Asian
type: Population
allele count: 24
allele frequency: 3.703703703703703e-2
allele num: 648
num of homozygotes: 0

African
type: Population
allele count: 70
allele frequency: 4.487179487179487e-2
allele num: 1560
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 2.352941176470588e-2
allele num: 170
num of homozygotes: 0

Latino
type: Population
allele count: 20
allele frequency: 4.484304932735426e-2
allele num: 446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 209
allele frequency: 3.267667292057536e-2
allele num: 6396
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.119e-1

FS
type: SiteQuality
SIO_000300: 2.99843e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.652e0

VQSLOD
type: SiteQuality
SIO_000300: -4.04e2

MQ
type: SiteQuality
SIO_000300: 5.913e1

DP
type: SiteQuality
SIO_000300: 5.97501e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.123e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.42e0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-2

QD
type: SiteQuality
SIO_000300: 1.78e0

GenotypeQuality
all individuals: 1444
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23488
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 462
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variant carriers: 0

GenotypeQuality
all individuals: 514
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variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11040
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.190476190476191e-3
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.442e0

DP
type: SiteQuality
SIO_000300: 5.76958e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.077e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.25e-1

GenotypeQuality
all individuals: 1889
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13214
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3899
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.65764447695684e-4
allele num: 2734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.5988e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.778e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.47e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.053e0

VQSLOD
type: SiteQuality
SIO_000300: -2.296e1

MQ
type: SiteQuality
SIO_000300: 5.881e1

DP
type: SiteQuality
SIO_000300: 5.68966e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

QD
type: SiteQuality
SIO_000300: 4.99e0

GenotypeQuality
all individuals: 2033
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4061
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 505
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10534
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.237011380504701e-4
allele num: 8084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.389e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

DP
type: SiteQuality
SIO_000300: 5.70398e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.37e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeQuality
all individuals: 23984
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 2.5e0
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GenotypeQuality
all individuals: 4157
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
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GenotypeQuality
all individuals: 227
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variant carriers: 0

GenotypeQuality
all individuals: 459
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GenotypeQuality
all individuals: 15075
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.138e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.19e-2

DP
type: SiteQuality
SIO_000300: 5.70382e5

GenotypeQuality
all individuals: 509
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 14662
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
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GenotypeQuality
all individuals: 227
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variant carriers: 0

GenotypeQuality
all individuals: 1917
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 460
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10504
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.86219739292365e-3
allele num: 1074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.26e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.677e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

DP
type: SiteQuality
SIO_000300: 5.69434e5

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 1.936e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 3450
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4127
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10434
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.24285359184688e-4
allele num: 8046
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 3.8535e1

VQSLOD
type: SiteQuality
SIO_000300: -6.308e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.51e-2

QD
type: SiteQuality
SIO_000300: 7.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

DP
type: SiteQuality
SIO_000300: 5.6969e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.133e0

GenotypeQuality
all individuals: 2021
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14471
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 509
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4135
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 417
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.676795045480937e-5
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2836
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.2453300124533e-4
allele num: 8030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-2

FS
type: SiteQuality
SIO_000300: 6.820000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.65e-1

DP
type: SiteQuality
SIO_000300: 5.69364e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 1.003e1

VQSLOD
type: SiteQuality
SIO_000300: -4.782e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 14926
bin: 2.25e1
variant carriers: 35

GenotypeQuality
all individuals: 23602
bin: 7.5e0
variant carriers: 24

GenotypeQuality
all individuals: 670
bin: 2.75e1
variant carriers: 25

GenotypeQuality
all individuals: 3225
bin: 1.75e1
variant carriers: 27

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 12

GenotypeQuality
all individuals: 517
bin: 7.75e1
variant carriers: 22

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 42

GenotypeQuality
all individuals: 2293
bin: 9.75e1
variant carriers: 462

GenotypeQuality
all individuals: 446
bin: 3.25e1
variant carriers: 22

European (Finnish)
type: Population
allele count: 1
allele frequency: 7.936507936507936e-3
allele num: 126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 325
allele frequency: 3.074158153613318e-2
allele num: 10572
num of homozygotes: 1

Other
type: Population
allele count: 2
allele frequency: 9.345794392523364e-3
allele num: 214
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 5.621925509486999e-3
allele num: 2846
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 1.377410468319559e-2
allele num: 726
num of homozygotes: 0

South Asian
type: Population
allele count: 106
allele frequency: 1.31578947368421e-2
allele num: 8056
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1034
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.63e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.36e0

DP
type: SiteQuality
SIO_000300: 5.7522e5

QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeQuality
all individuals: 24270
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16186
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.245640259093174e-4
allele num: 8028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.552923194497516e-5
allele num: 10468
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.38121546961326e-3
allele num: 724
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 2.795248078266946e-3
allele num: 2862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.45e-2

FS
type: SiteQuality
SIO_000300: 6.418e0

QD
type: SiteQuality
SIO_000300: 1.232e1

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

DP
type: SiteQuality
SIO_000300: 5.72397e5

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 522
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4345
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.556574923547401e-5
allele num: 10464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 9.560229445506692e-4
allele num: 1046
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 1.482e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

DP
type: SiteQuality
SIO_000300: 5.73615e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.34e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 8.44e0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24424
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2880
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.698e-1

DP
type: SiteQuality
SIO_000300: 5.75995e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.41e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.59e0

GenotypeQuality
all individuals: 2047
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24565
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4441
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.385041551246537e-3
allele num: 722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8026
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.38e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e0

DP
type: SiteQuality
SIO_000300: 5.76732e5

VQSLOD
type: SiteQuality
SIO_000300: -2.483e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 6.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

GenotypeQuality
all individuals: 169
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4292
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16072
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variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
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variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1111
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 4.629629629629629e-3
allele num: 216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.400263207369807e-5
allele num: 10638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 2.067539627842867e-3
allele num: 2902
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.347708894878706e-3
allele num: 742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8016
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.73409e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.69e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.341e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.57e-1

QD
type: SiteQuality
SIO_000300: 1.092e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
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variant carriers: 1

GenotypeQuality
all individuals: 517
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GenotypeQuality
all individuals: 47
bin: 4.75e1
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GenotypeQuality
all individuals: 1229
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GenotypeQuality
all individuals: 38
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GenotypeQuality
all individuals: 4122
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variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.40379913485048e-5
allele num: 10634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7994
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 8.75e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.81e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 5.67016e5

GenotypeQuality
all individuals: 10970
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3690
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.481894150417827e-4
allele num: 2872
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

FS
type: SiteQuality
SIO_000300: 5.048e0

QD
type: SiteQuality
SIO_000300: 3.376e1

VQSLOD
type: SiteQuality
SIO_000300: -2.524e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-2

DP
type: SiteQuality
SIO_000300: 5.5304e5

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.01e-2

GenotypeQuality
all individuals: 339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7036
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.961168856638557e-4
allele num: 10198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.592356687898089e-3
allele num: 628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7948
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.111e-1

DP
type: SiteQuality
SIO_000300: 5.42901e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.382e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.73e-1

FS
type: SiteQuality
SIO_000300: 3.27e0

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.34e-2

GenotypeQuality
all individuals: 7928
bin: 2.5e0
variant carriers: 31

GenotypeQuality
all individuals: 552
bin: 8.75e1
variant carriers: 517

GenotypeQuality
all individuals: 1488
bin: 2.75e1
variant carriers: 1391

GenotypeQuality
all individuals: 831
bin: 9.25e1
variant carriers: 774

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 120

GenotypeQuality
all individuals: 350
bin: 7.75e1
variant carriers: 252

GenotypeQuality
all individuals: 985
bin: 6.75e1
variant carriers: 767

African
type: Population
allele count: 1167
allele frequency: 3.838815789473684e-1
allele num: 3040
num of homozygotes: 205

Latino
type: Population
allele count: 427
allele frequency: 5.446428571428571e-1
allele num: 784
num of homozygotes: 102

East Asian
type: Population
allele count: 351
allele frequency: 3.407766990291262e-1
allele num: 1030
num of homozygotes: 52

European (Finnish)
type: Population
allele count: 169
allele frequency: 6.259259259259259e-1
allele num: 270
num of homozygotes: 47

European (Non-Finnish)
type: Population
allele count: 7385
allele frequency: 6.017764015645372e-1
allele num: 12272
num of homozygotes: 2079

Other
type: Population
allele count: 120
allele frequency: 5.263157894736842e-1
allele num: 228
num of homozygotes: 31

South Asian
type: Population
allele count: 3882
allele frequency: 4.835575485799701e-1
allele num: 8028
num of homozygotes: 975

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 2.253e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.10244e5

VQSLOD
type: SiteQuality
SIO_000300: 7.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.985e-1

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 347
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7294
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.269357705001269e-4
allele num: 7878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.889e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.31e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

DP
type: SiteQuality
SIO_000300: 4.93501e5

VQSLOD
type: SiteQuality
SIO_000300: -7.013e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e0

QD
type: SiteQuality
SIO_000300: 4.54e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

FS
type: SiteQuality
SIO_000300: 2.409e0

GenotypeQuality
all individuals: 1780
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7792
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.87e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.808e0

VQSLOD
type: SiteQuality
SIO_000300: -3.603e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.652e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.70871e5

GenotypeQuality
all individuals: 667
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3799
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.459948320413437e-4
allele num: 1548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.63e0

DP
type: SiteQuality
SIO_000300: 3.16225e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.807e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.86e-2

QD
type: SiteQuality
SIO_000300: 2.45e0

GenotypeQuality
all individuals: 116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.830917874396135e-4
allele num: 2070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.85e-1

QD
type: SiteQuality
SIO_000300: 1.107e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.26e-1

FS
type: SiteQuality
SIO_000300: 3.751e0

DP
type: SiteQuality
SIO_000300: 3.16632e5

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 8.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

GenotypeQuality
all individuals: 1182
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 526
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.536783358701167e-4
allele num: 7884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.169043722235212e-4
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

QD
type: SiteQuality
SIO_000300: 1.265e1

VQSLOD
type: SiteQuality
SIO_000300: 3.54e-1

DP
type: SiteQuality
SIO_000300: 3.17406e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.53e-2

GenotypeQuality
all individuals: 658
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.169043722235212e-4
allele num: 8554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.80517503805175e-4
allele num: 7884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

VQSLOD
type: SiteQuality
SIO_000300: 3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.53e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.265e1

MQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

DP
type: SiteQuality
SIO_000300: 3.17406e5

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.104e1

VQSLOD
type: SiteQuality
SIO_000300: -5.41e-2

DP
type: SiteQuality
SIO_000300: 3.18656e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.68e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 5347
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 7.594936708860759e-4
allele num: 7900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.255e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

DP
type: SiteQuality
SIO_000300: 3.19341e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e-1

FS
type: SiteQuality
SIO_000300: 3.431e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 21

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 9

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 14

GenotypeQuality
all individuals: 98
bin: 9.25e1
variant carriers: 53

GenotypeQuality
all individuals: 2708
bin: 6.25e1
variant carriers: 38

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 27

GenotypeQuality
all individuals: 142
bin: 8.25e1
variant carriers: 48

GenotypeQuality
all individuals: 198
bin: 7.75e1
variant carriers: 34

South Asian
type: Population
allele count: 3548
allele frequency: 4.486595852301467e-1
allele num: 7908
num of homozygotes: 820

African
type: Population
allele count: 1139
allele frequency: 5.297674418604651e-1
allele num: 2150
num of homozygotes: 307

European (Non-Finnish)
type: Population
allele count: 2547
allele frequency: 2.930955120828538e-1
allele num: 8690
num of homozygotes: 370

European (Finnish)
type: Population
allele count: 450
allele frequency: 2.784653465346535e-1
allele num: 1616
num of homozygotes: 67

East Asian
type: Population
allele count: 281
allele frequency: 4.683333333333333e-1
allele num: 600
num of homozygotes: 72

Latino
type: Population
allele count: 132
allele frequency: 3.350253807106599e-1
allele num: 394
num of homozygotes: 23

Other
type: Population
allele count: 87
allele frequency: 3.625e-1
allele num: 240
num of homozygotes: 19

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.14e-1

DP
type: SiteQuality
SIO_000300: 5.28264e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.426e0

QD
type: SiteQuality
SIO_000300: 1.799e1

VQSLOD
type: SiteQuality
SIO_000300: 6.26e0

GenotypeQuality
all individuals: 613
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5622
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.15473441108545e-4
allele num: 8660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.265182186234818e-4
allele num: 7904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.113e0

FS
type: SiteQuality
SIO_000300: 1.165e0

DP
type: SiteQuality
SIO_000300: 3.35674e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.604e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.342e0

GenotypeQuality
all individuals: 459
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 5618
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.739336492890995e-4
allele num: 2110
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 1.264862130027827e-3
allele num: 7906
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 7.653061224489796e-3
allele num: 392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 1.652892561983471e-2
allele num: 242
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 63
allele frequency: 7.286606523247745e-3
allele num: 8646
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.268e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.678e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-2

DP
type: SiteQuality
SIO_000300: 3.3737e5

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5622
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.154467790348649e-4
allele num: 8662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2104
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.33561e5

FS
type: SiteQuality
SIO_000300: 3.743e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.022e1

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5518
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.267748478701826e-4
allele num: 7888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8738
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-2

DP
type: SiteQuality
SIO_000300: 3.30692e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.055e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

MQ
type: SiteQuality
SIO_000300: 5.899e1

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.267748478701826e-4
allele num: 7888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.541e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 3.30523e5

FS
type: SiteQuality
SIO_000300: 6.956e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.931e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.278e0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1600
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.268713524486171e-4
allele num: 7882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2080
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

DP
type: SiteQuality
SIO_000300: 3.28825e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.489e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

GenotypeQuality
all individuals: 1096
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3943
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 149
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 8.832188420019628e-3
allele num: 2038
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.280737704918033e-4
allele num: 7808
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.032258064516129e-3
allele num: 248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

DP
type: SiteQuality
SIO_000300: 3.04621e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

QD
type: SiteQuality
SIO_000300: 1.864e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

GenotypeQuality
all individuals: 182
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.347826086956522e-3
allele num: 460
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.1401e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

DP
type: SiteQuality
SIO_000300: 3.0335e5

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.154e0

QD
type: SiteQuality
SIO_000300: 1.046e1

GenotypeQuality
all individuals: 326
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.17813383600377e-4
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

DP
type: SiteQuality
SIO_000300: 2.98595e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.026e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.026e0

GenotypeQuality
all individuals: 1099
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8197
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 482
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2906
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.041907849039129e-3
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.266e0

QD
type: SiteQuality
SIO_000300: 1.424e1

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.959e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

DP
type: SiteQuality
SIO_000300: 1.974448e6

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 2509
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.09979260705136e-5
allele num: 16394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

DP
type: SiteQuality
SIO_000300: 1.976852e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
all individuals: 262
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2509
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8176
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.09979260705136e-5
allele num: 16394
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.32e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

DP
type: SiteQuality
SIO_000300: 1.976852e6

GenotypeQuality
all individuals: 299
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.976852e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

QD
type: SiteQuality
SIO_000300: 1.322e1

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

GenotypeQuality
all individuals: 384
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8370
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 9.25e1
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GenotypeQuality
all individuals: 813
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

African
type: Population
allele count: 23
allele frequency: 2.211538461538461e-3
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

QD
type: SiteQuality
SIO_000300: 1.51e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.8e-2

DP
type: SiteQuality
SIO_000300: 1.978605e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.14e0

VQSLOD
type: SiteQuality
SIO_000300: 5.09e0

GenotypeQuality
all individuals: 1532
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2444
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variant carriers: 0

GenotypeQuality
all individuals: 29991
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 8158
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e0

QD
type: SiteQuality
SIO_000300: 1.344e1

DP
type: SiteQuality
SIO_000300: 1.982967e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e0

GenotypeQuality
all individuals: 2433
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
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variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
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variant carriers: 0

GenotypeQuality
all individuals: 1531
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variant carriers: 0

GenotypeQuality
all individuals: 30186
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.984118e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.01e0

FS
type: SiteQuality
SIO_000300: 5.952e0

MQRankSum
type: SiteQuality
SIO_000300: -9.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.277e0

QD
type: SiteQuality
SIO_000300: 1.398e1

MQ
type: SiteQuality
SIO_000300: 5.88e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 1502
bin: 9.25e1
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GenotypeQuality
all individuals: 3607
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.86e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.65e-1

QD
type: SiteQuality
SIO_000300: 1.443e1

DP
type: SiteQuality
SIO_000300: 1.991243e6

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1049
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variant carriers: 0

GenotypeQuality
all individuals: 30879
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.734505087881591e-3
allele num: 8648
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.992299e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

QD
type: SiteQuality
SIO_000300: 1.49e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.63e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2743
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variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.683e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.058e0

DP
type: SiteQuality
SIO_000300: 1.994756e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.197e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2357
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 6.883e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.617e0

DP
type: SiteQuality
SIO_000300: 2.001321e6

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 9.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 8414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8115
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

DP
type: SiteQuality
SIO_000300: 2.004141e6

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

FS
type: SiteQuality
SIO_000300: 4.323e0

QD
type: SiteQuality
SIO_000300: 1.469e1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8410
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99805126667666e-5
allele num: 66710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.936416184971098e-4
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.065e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

QD
type: SiteQuality
SIO_000300: 1.397e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.006069e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.638e0

QD
type: SiteQuality
SIO_000300: 2.83e1

VQSLOD
type: SiteQuality
SIO_000300: -2.848e0

FS
type: SiteQuality
SIO_000300: 1.763e0

DP
type: SiteQuality
SIO_000300: 2.005818e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.163e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 1.774e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.409e0

QD
type: SiteQuality
SIO_000300: 1.195e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.006528e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1039
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.457814661134163e-4
allele num: 11568
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.006528e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.409e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

QD
type: SiteQuality
SIO_000300: 1.195e1

FS
type: SiteQuality
SIO_000300: 1.774e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3565
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: -8.744e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.529e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.07e0

DP
type: SiteQuality
SIO_000300: 2.006053e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2737
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.561e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.468e0

VQSLOD
type: SiteQuality
SIO_000300: 7.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.101e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

BaseQRankSum
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SIO_000300: -2.965e0

DP
type: SiteQuality
SIO_000300: 2.006076e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
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SIO_000300: -1.176e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.0746e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: -6.72e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.006136e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.32e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

ClippingRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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SIO_000300: 2.25e0

FS
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.006257e6

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.014e1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.228e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.21e-1

DP
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SIO_000300: 2.006253e6

QD
type: SiteQuality
SIO_000300: 1.446e1

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 1.743e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.89e-1

QD
type: SiteQuality
SIO_000300: 1.181e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

DP
type: SiteQuality
SIO_000300: 2.006266e6

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8106
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 2.006233e6

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.164e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.129e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 3.223e0

QD
type: SiteQuality
SIO_000300: 1.204e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32957
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

QD
type: SiteQuality
SIO_000300: 1.319e1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 2.006203e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

FS
type: SiteQuality
SIO_000300: 6.577e0

MQRankSum
type: SiteQuality
SIO_000300: 7.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8435
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1501
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 2.006258e6

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 4.489e0

QD
type: SiteQuality
SIO_000300: 1.161e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.050129645635263e-4
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 26
allele frequency: 1.574612403100775e-3
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 4.794869489646078e-4
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.009418e6

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.32e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.2e1

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.429999999999999e-1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.25e-1

QD
type: SiteQuality
SIO_000300: 1.383e1

DP
type: SiteQuality
SIO_000300: 2.00592e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.061e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.990380293086398e-5
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

DP
type: SiteQuality
SIO_000300: 2.005908e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 9.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1